View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8939_low_42 (Length: 245)
Name: NF8939_low_42
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_low_42 |
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| [»] chr3 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 245
Target Start/End: Original strand, 4316299 - 4316529
Alignment:
| Q |
15 |
acatcaagtacgacagcacctttgtatggaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttaacccatttaacag |
114 |
Q |
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| T |
4316299 |
acatcaagtacaacagcacctttgtatggaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttgacccatttaacag |
4316398 |
T |
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| Q |
115 |
catgacgaatctttgaaatagacccttgtttatcctccttcaagccatatttcacaataaggtttaatacatgcgtgcaacaccgcatgtgaacataatc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4316399 |
catgacgaatctttgaaatagacccttgtttatcctccttcaagccagatttcacaataaggtttaatacatgcgtgcaacaccgcatgtgaatataatc |
4316498 |
T |
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| Q |
215 |
cccatttaggacgtgattgtcccaagaactc |
245 |
Q |
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| T |
4316499 |
cccatttaggacgtgattgtcccaagaactc |
4316529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 5936171 - 5935941
Alignment:
| Q |
15 |
acatcaagtacgacagcacctttgtatggaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttaacccatttaacag |
114 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5936171 |
acatcaagtacaacaacacctttgtatggaattttctcatcagaagcacatctcatgaacttttccaatctagatagcgaggatttaacccatttaacaa |
5936072 |
T |
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| Q |
115 |
catgacgaatctttgaaatagacccttgtttatcctccttcaagccatatttcacaataaggtttaatacatgcgtgcaacaccgcatgtgaacataatc |
214 |
Q |
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| T |
5936071 |
catgacgaatctttgaaatagacccttgtttatcctccttcaagccagatttcacaataaggtttaatacatgcgtgcaacaccgcatgtgaacataatc |
5935972 |
T |
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| Q |
215 |
cccatttaggacgtgattgtcccaagaactc |
245 |
Q |
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| T |
5935971 |
cccatttaggacgtgattgtcccaagaactc |
5935941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 245
Target Start/End: Original strand, 5933293 - 5933523
Alignment:
| Q |
15 |
acatcaagtacgacagcacctttgtatggaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttaacccatttaacag |
114 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5933293 |
acatcaagtacaacaacacctttgtatggaattttctcatcagaagcacatctcataaacttttccaatctagatggcgaggatttaacccatttaacag |
5933392 |
T |
|
| Q |
115 |
catgacgaatctttgaaatagacccttgtttatcctccttcaagccatatttcacaataaggtttaatacatgcgtgcaacaccgcatgtgaacataatc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
5933393 |
catgacgaatctttgaaatagacccttgtttatcctccttcaagccagatttcacaataaggtttactacatgtgtgcaacaccgcatgtgaacataatc |
5933492 |
T |
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| Q |
215 |
cccatttaggacgtgattgtcccaagaactc |
245 |
Q |
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| T |
5933493 |
cccatttaggacgtgattgtcccaataactc |
5933523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 16046375 - 16046145
Alignment:
| Q |
15 |
acatcaagtacgacagcacctttgtatggaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttaacccatttaacag |
114 |
Q |
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||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
16046375 |
acatcaagtacaacaacacctttgtatgaaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttgacccatttaactg |
16046276 |
T |
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| Q |
115 |
catgacgaatctttgaaatagacccttgtttatcctccttcaagccatatttcacaataaggtttaatacatgcgtgcaacaccgcatgtgaacataatc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16046275 |
catgacgaatctttgaaatagacccttgtttatcctccttcaagccagattttacaataaggtttaatacatgcgtgcaacaccgcatgtgaacataatc |
16046176 |
T |
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| Q |
215 |
cccatttaggacgtgattgtcccaagaactc |
245 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
16046175 |
cccatttaggacgtgattgtcccaagaactc |
16046145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 29090465 - 29090236
Alignment:
| Q |
16 |
catcaagtacgacagcacctttgtatggaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttaacccatttaacagc |
115 |
Q |
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|
|||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29090465 |
catcaagtacaacaacacctttttatggaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttgacccatttaacagc |
29090366 |
T |
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| Q |
116 |
atgacgaatctttgaaatagacccttgtttatcctccttcaagccatatttcacaataaggtttaatacatgcgtgcaacaccgcatgtgaacataatcc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29090365 |
atgacgaatctttgaaatagacccttgtttatcctccctcaagccagatttcacaataaggtttaatacatgcgtgcaacaccacatgtgaacataatcc |
29090266 |
T |
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| Q |
216 |
ccatttaggacgtgattgtcccaagaactc |
245 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29090265 |
ccatttaggacgtgattgtcccaagaactc |
29090236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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