View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8939_low_44 (Length: 244)

Name: NF8939_low_44
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8939_low_44
NF8939_low_44
[»] chr2 (6 HSPs)
chr2 (91-236)||(11147699-11147845)
chr2 (15-67)||(29926881-29926933)
chr2 (14-91)||(7165738-7165816)
chr2 (21-67)||(13478769-13478815)
chr2 (42-85)||(1517582-1517626)
chr2 (19-67)||(20966213-20966261)
[»] chr7 (1 HSPs)
chr7 (15-71)||(10228757-10228813)
[»] chr4 (3 HSPs)
chr4 (19-91)||(971881-971954)
chr4 (19-67)||(8170760-8170808)
chr4 (40-91)||(12922202-12922254)
[»] chr5 (1 HSPs)
chr5 (20-72)||(12403295-12403347)
[»] chr3 (4 HSPs)
chr3 (15-67)||(43838816-43838868)
chr3 (26-71)||(47944340-47944385)
chr3 (19-71)||(34979173-34979225)
chr3 (20-68)||(47944547-47944595)
[»] chr8 (3 HSPs)
chr8 (26-67)||(7681014-7681055)
chr8 (19-86)||(7603934-7604002)
chr8 (27-86)||(21215939-21215999)
[»] scaffold0687 (1 HSPs)
scaffold0687 (19-86)||(1618-1686)


Alignment Details
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 91 - 236
Target Start/End: Complemental strand, 11147845 - 11147699
Alignment:
Q  91 ccaaacgtatacatttttaataatttaattgaacgtttgtnnnnnnnnnnnnnttaatcttgttaagcatttctttttcttctttcttgatttgatcatt 190  Q
    ||||||||||||||||||||||||||||| ||||||||||             |||||||||||||||||||  |||||||| || ||||||||||||||    
T  11147845 ccaaacgtatacatttttaataatttaatcgaacgtttgtaaaaagaaaataattaatcttgttaagcattttcttttcttcgttgttgatttgatcatt 11147746  T
Q  191 aatctataataagca-ttctccctcattctcatccctctctgctcct 236  Q
    ||||||||||||||| |||||||||||||||||||||| ||| ||||    
T  11147745 aatctataataagcatttctccctcattctcatccctccctggtcct 11147699  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 29926881 - 29926933
Alignment:
Q  15 tcaaagactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 67  Q
    |||||||||| ||||||||||||||||||||||||  ||||||||| ||||||    
T  29926881 tcaaagactattttgactaatgaaatgcacaatcattgactattttaaaattt 29926933  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 7165738 - 7165816
Alignment:
Q  14 ttcaaagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagactattttgac 91  Q
    ||||||||||| ||| |||||| || |||| ||||| |||||||||| ||||||  || ||||||||||||||| ||||    
T  7165738 ttcaaagactattttaactaataaagtgcaaaatcagagactattttaaaattttaatacattgaaagactattgtgac 7165816  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 13478769 - 13478815
Alignment:
Q  21 actaatttgactaatgaaatgcacaatcaaagactattttcaaattt 67  Q
    |||| |||||||||| ||||||||||||||| |||||||| ||||||    
T  13478769 actattttgactaataaaatgcacaatcaaaaactattttaaaattt 13478815  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 1517626 - 1517582
Alignment:
Q  42 cacaatcaaagactattttcaaatttcgat-cattgaaagactat 85  Q
    ||||||||||||||||||| |||||||||| ||||||| ||||||    
T  1517626 cacaatcaaagactattttaaaatttcgatacattgaaggactat 1517582  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 20966213 - 20966261
Alignment:
Q  19 agactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 67  Q
    |||||| |||||||||  || ||||||||||||||||||||| ||||||    
T  20966213 agactattttgactaacaaagtgcacaatcaaagactattttaaaattt 20966261  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 10228813 - 10228757
Alignment:
Q  15 tcaaagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat 71  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||||    
T  10228813 tcaaagactattttgactaacgaattgcacaatcaaagactattttgaaatttcgat 10228757  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 971954 - 971881
Alignment:
Q  19 agactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagactattttgac 91  Q
    |||||| |||||||||  || ||||||||||||||||||||| |||||| ||| ||||||| ||||||| ||||    
T  971954 agactactttgactaacaaagtgcacaatcaaagactattttgaaattttgatacattgaatgactattgtgac 971881  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 8170808 - 8170760
Alignment:
Q  19 agactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 67  Q
    |||||| |||||||||  || ||||||||||||||||||||| ||||||    
T  8170808 agactattttgactaacaaagtgcacaatcaaagactattttgaaattt 8170760  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 12922254 - 12922202
Alignment:
Q  40 tgcacaatcaaagactattttcaaatttcgat-cattgaaagactattttgac 91  Q
    |||||||||||| |||||||| |||||||||| |||||||| |||||| ||||    
T  12922254 tgcacaatcaaaaactattttgaaatttcgatacattgaaatactattgtgac 12922202  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 12403295 - 12403347
Alignment:
Q  20 gactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgatc 72  Q
    ||||| ||||| |||| ||||| |||||||||||||||||| |||||||||||    
T  12403295 gactattttgagtaataaaatggacaatcaaagactattttaaaatttcgatc 12403347  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 43838816 - 43838868
Alignment:
Q  15 tcaaagactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 67  Q
    |||||||||| |||||||||  |||||||||||||| ||||||||| ||||||    
T  43838816 tcaaagactattttgactaacaaaatgcacaatcaatgactattttaaaattt 43838868  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 47944385 - 47944340
Alignment:
Q  26 tttgactaatgaaatgcacaatcaaagactattttcaaatttcgat 71  Q
    |||||||||  || ||||||||||||||||||||| ||||||||||    
T  47944385 tttgactaacaaagtgcacaatcaaagactattttaaaatttcgat 47944340  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 34979173 - 34979225
Alignment:
Q  19 agactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat 71  Q
    |||||| |||||||||  ||||||||||| ||| |||||||| ||||||||||    
T  34979173 agactattttgactaacaaaatgcacaattaaaaactattttaaaatttcgat 34979225  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 47944547 - 47944595
Alignment:
Q  20 gactaatttgactaatgaaatgcacaatcaaagactattttcaaatttc 68  Q
    ||||| ||||| ||| ||| ||||||||||||||||||||| |||||||    
T  47944547 gactattttgattaacgaagtgcacaatcaaagactattttaaaatttc 47944595  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 7681014 - 7681055
Alignment:
Q  26 tttgactaatgaaatgcacaatcaaagactattttcaaattt 67  Q
    ||||||||| |||||||||||||||| |||||||| ||||||    
T  7681014 tttgactaacgaaatgcacaatcaaatactattttaaaattt 7681055  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 7604002 - 7603934
Alignment:
Q  19 agactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagactatt 86  Q
    |||||| |||||| || ||| |||||||||||| | |||||| |||||| ||| |||||||||||||||    
T  7604002 agactattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgatacattgaaagactatt 7603934  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 21215999 - 21215939
Alignment:
Q  27 ttgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagactatt 86  Q
    |||||||| ||| ||||||||||| ||||||||| ||||||| || ||||||| |||||||    
T  21215999 ttgactaacgaagtgcacaatcaatgactattttgaaatttcaatacattgaaggactatt 21215939  T

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Target: scaffold0687 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 1686 - 1618
Alignment:
Q  19 agactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagactatt 86  Q
    |||||| |||||| || ||| |||||||||||| | |||||| |||||| ||| |||||||||||||||    
T  1686 agactattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgatacattgaaagactatt 1618  T

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