View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8939_low_48 (Length: 219)
Name: NF8939_low_48
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_low_48 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 30238850 - 30238632
Alignment:
| Q |
1 |
atcatacaatcatttgaagtgccatcatcaaagttgagacaatagctttgaagatcatagctatactgtggactgctccttttccacccaagagattgtt |
100 |
Q |
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| T |
30238850 |
atcatacaatcatttgaagtgccatcatcaaagttgagacaatagctttgaagatcatagctatactgtggactgctccttttccacccaagagattgtt |
30238751 |
T |
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| Q |
101 |
tccaacaattcttcaacttacaaaatagttttcttacaatacatgacaaagagcaacactcaagtgtaacgcttctttgaacattattattaccaagtgt |
200 |
Q |
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| T |
30238750 |
tccaacaattcttcaacttacaaaatagtttttttacaataaatgacaaagagcaacactcaagtgtaacgcttctttgaacattattattaccaagtgt |
30238651 |
T |
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| Q |
201 |
cactgaagaggtaactctt |
219 |
Q |
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| T |
30238650 |
cactgaagaggtaactctt |
30238632 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 39325312 - 39325356
Alignment:
| Q |
31 |
aagttgagacaatagctttgaagatcatagctatactgtggactg |
75 |
Q |
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| T |
39325312 |
aagttcagacaataactgcgaagatcatagctatactgtggactg |
39325356 |
T |
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