View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8939_low_5 (Length: 719)

Name: NF8939_low_5
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8939_low_5
NF8939_low_5
[»] chr8 (5 HSPs)
chr8 (1-209)||(31387146-31387354)
chr8 (1-183)||(24924206-24924386)
chr8 (277-336)||(31387026-31387085)
chr8 (409-471)||(31386891-31386953)
chr8 (145-183)||(24924404-24924442)
[»] chr6 (3 HSPs)
chr6 (1-178)||(22052824-22053002)
chr6 (1-91)||(22352630-22352720)
chr6 (144-181)||(22053009-22053046)
[»] chr3 (7 HSPs)
chr3 (4-182)||(13822618-13822796)
chr3 (1-184)||(4264770-4264952)
chr3 (410-473)||(4264440-4264503)
chr3 (410-465)||(13823009-13823064)
chr3 (120-163)||(13822777-13822820)
chr3 (142-184)||(4264688-4264730)
chr3 (120-184)||(4264729-4264791)
[»] chr2 (2 HSPs)
chr2 (1-178)||(44363209-44363387)
chr2 (144-181)||(44363394-44363431)
[»] chr1 (19 HSPs)
chr1 (479-703)||(31126382-31126605)
chr1 (1-184)||(19151525-19151707)
chr1 (1-184)||(23678581-23678763)
chr1 (1-179)||(17224471-17224648)
chr1 (1-184)||(25871988-25872169)
chr1 (16-98)||(38245404-38245480)
chr1 (410-471)||(19151991-19152052)
chr1 (410-470)||(25871695-25871755)
chr1 (410-469)||(23679050-23679109)
chr1 (422-469)||(17224158-17224205)
chr1 (143-184)||(17224425-17224466)
chr1 (120-179)||(25871952-25872009)
chr1 (142-184)||(19151747-19151789)
chr1 (142-184)||(23678803-23678845)
chr1 (517-649)||(31077104-31077233)
chr1 (120-184)||(19151686-19151748)
chr1 (120-184)||(23678742-23678804)
chr1 (499-544)||(31131127-31131172)
chr1 (628-703)||(31128649-31128723)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-184)||(86473-86655)
[»] chr7 (5 HSPs)
chr7 (1-184)||(41546347-41546529)
chr7 (410-469)||(41546039-41546098)
chr7 (142-184)||(41546265-41546307)
chr7 (120-184)||(41546306-41546368)
chr7 (410-459)||(12103200-12103249)
[»] chr4 (7 HSPs)
chr4 (1-184)||(55039645-55039827)
chr4 (1-184)||(14055784-14055965)
chr4 (410-471)||(55039335-55039396)
chr4 (410-470)||(14056244-14056304)
chr4 (143-184)||(14056006-14056047)
chr4 (142-184)||(55039563-55039605)
chr4 (120-184)||(55039604-55039666)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 31387354 - 31387146
Alignment:
Q  1 atcacccaagatctcagtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaaaaaggaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31387354 atcacccaagatctcagtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaaaaaggaaca 31387255  T
Q  101 ctgtgaaagagatcgtcggagatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacggcggccggcggcgtgcggcta 200  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31387254 ctgtgaaagagatcatcggagatggagcaggagacggcggcgcgcggctagggttgaacggaagatggagcaggagacggcggccgacggcgtgcggcta 31387155  T
Q  201 aggttgaac 209  Q
    |||||||||    
T  31387154 aggttgaac 31387146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 24924206 - 24924386
Alignment:
Q  1 atcacccaagatctcagtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaaaaaggaaca 100  Q
    |||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  24924206 atcacccaagatctcagtcaagaccttacataa-tcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctgagttcaaaaaggaaca 24924304  T
Q  101 ctgtgaaagagatcgtcggagatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacggcgg 183  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| |||||||    
T  24924305 ctgtgaaagagatcgtcggagatggagcaggagacggcggcgcgc-gctagggttgagcggaagatggagcaggacacggcgg 24924386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 277 - 336
Target Start/End: Complemental strand, 31387085 - 31387026
Alignment:
Q  277 agggtgaaagagaagttttcacgatgaattgaaatgagagagtgagagaggtacggctga 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31387085 agggtgaaagagaagttttcacgatgaattgaaatgagagagtgagagaggtacggctga 31387026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 409 - 471
Target Start/End: Complemental strand, 31386953 - 31386891
Alignment:
Q  409 atgccacataagagtggtataagatgtgttgccacctatggtggtacacctatcactgctctt 471  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31386953 atgccacataagagtggtataaggtgtgttgccacctatggtggtacacctatcactgctctt 31386891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 24924404 - 24924442
Alignment:
Q  145 cggctagggttgaacggaagatggagcaggagacggcgg 183  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  24924404 cggctagggttcaacggaagatggagcaggagacggcgg 24924442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 151; Significance: 2e-79; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 22052824 - 22053002
Alignment:
Q  1 atcacccaagatctcagtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaaaaaggaaca 100  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  22052824 atcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctaagttgaaaaaggaaca 22052923  T
Q  101 ctgtgaaagagatcgtcggagatggagcaggagacggtggcgcgcg-gctagggttgaacggaagatggagcaggagac 178  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  22052924 ctgtgaaagagatcgtcggagatggagcaggagacggcggcgcgcgcgctagggttgaacggaagatggagcaggagac 22053002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 22352720 - 22352630
Alignment:
Q  1 atcacccaagatctcagtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaa 91  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22352720 atcacccaagatctcagtgaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctgagttgaa 22352630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 22053009 - 22053046
Alignment:
Q  144 gcggctagggttgaacggaagatggagcaggagacggc 181  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22053009 gcggctagggttgaacggaagatggagcaggagacggc 22053046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 2e-79; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 4 - 182
Target Start/End: Original strand, 13822618 - 13822796
Alignment:
Q  4 acccaagatctcagtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaaaaaggaacactg 103  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13822618 acccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctgagttgaaaaaggaacactg 13822717  T
Q  104 tgaaagagatcgtcggagatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacggcg 182  Q
    |||||||||||||||||||||||||||||||||| |||  ||||||||||||||| |||||||||||||||||||||||    
T  13822718 tgaaagagatcgtcggagatggagcaggagacggcggctagcggctagggttgaatggaagatggagcaggagacggcg 13822796  T

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Target: chr3; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 4264952 - 4264770
Alignment:
Q  1 atcacccaagatctcagtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaaaaaggaaca 100  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||    
T  4264952 atcacccaagatctcagtcaagaccttacataaatcacaaaatctaacagccaagaggaagaggaatatgaaagaaaataccttagttgaaaaaggaaca 4264853  T
Q  101 ctgtgaaagagatcgtcggagatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
     ||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||| ||||||||| |||||||||||||||    
T  4264852 ttgtgaaacagatcgtcggagatggagcaggtgacggcggcgcgc-gctagggttgaatggaagatggggcaggagacggcggc 4264770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 410 - 473
Target Start/End: Complemental strand, 4264503 - 4264440
Alignment:
Q  410 tgccacataagagtggtataagatgtgttgccacctatggtggtacacctatcactgctctttt 473  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  4264503 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctctttt 4264440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 410 - 465
Target Start/End: Original strand, 13823009 - 13823064
Alignment:
Q  410 tgccacataagagtggtataagatgtgttgccacctatggtggtacacctatcact 465  Q
    ||||||||||| |||||||||| ||| |||||||||||||||||| ||||||||||    
T  13823009 tgccacataagggtggtataaggtgtattgccacctatggtggtatacctatcact 13823064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 13822777 - 13822820
Alignment:
Q  120 agatggagcaggagacggtggcgcgcggctagggttgaacggaa 163  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  13822777 agatggagcaggagacggcgacgcgcggctagggttgaacggaa 13822820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 4264730 - 4264688
Alignment:
Q  142 gcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  4264730 gcgcggctagggttgaatggaagatggatcaggagacggcggc 4264688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 4264791 - 4264729
Alignment:
Q  120 agatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    |||||| ||||||||||| ||||||  ||||||||  ||||||||||||||||  ||||||||||    
T  4264791 agatggggcaggagacggcggcgcg--gctagggtgtaacggaagatggagcataagacggcggc 4264729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 44363209 - 44363387
Alignment:
Q  1 atcacccaagatctcagtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaaaaaggaaca 100  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  44363209 atcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctaagttgaaaaaggaaca 44363308  T
Q  101 ctgtgaaagagatcgtcggagatggagcaggagacggtggcgcgcg-gctagggttgaacggaagatggagcaggagac 178  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  44363309 ctgtgaaagagatcgtcggagatggagcaggagacggcggcgcgcgcgctagggttgaacggaagatggagcaggagac 44363387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 44363394 - 44363431
Alignment:
Q  144 gcggctagggttgaacggaagatggagcaggagacggc 181  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44363394 gcggctagggttgaacggaagatggagcaggagacggc 44363431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 2e-76; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 479 - 703
Target Start/End: Original strand, 31126382 - 31126605
Alignment:
Q  479 caatgtgatagcaaccaaagtgaaa--tatcttacgtacaaaatggaactcgaaacattggtttctttcttactttattactctgtaactctcatttcgt 576  Q
    ||||| |||||||||| |||| |||  |||||||||||| ||||||||||||||| |||||||||||||||||||||   ||||||||||||| | ||||    
T  31126382 caatgcgatagcaacccaagtcaaaaatatcttacgtaccaaatggaactcgaaatattggtttctttcttacttta---ctctgtaactctcgtgtcgt 31126478  T
Q  577 tcttattcatagccaaaacaaaattatcaaaatccccaaaaacaccctcttccaccgccattcccaaaccttatccaattttcggttccacttttgcttt 676  Q
    |||||||| |||||||||||||| |||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  31126479 tcttattcttagccaaaacaaaactatcaatatccccaaaaacacactcctccaccgccattcccaaaccttatccaattttcggttccatatttgcttt 31126578  T
Q  677 ttccgccaacttccaccgccgcataca 703  Q
    |||||||||||||||||||||||||||    
T  31126579 ttccgccaacttccaccgccgcataca 31126605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 19151525 - 19151707
Alignment:
Q  1 atcacccaagatctcagtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaaaaaggaaca 100  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||    
T  19151525 atcacccaagatctcagtcaagaccttacataaatcacaaaatctaacagccaagaggaagaggaatatgaaagaaaataccttagttgaaaaaggaaca 19151624  T
Q  101 ctgtgaaagagatcgtcggagatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||    
T  19151625 ctgtgaaacagatcgtcggagatggagcaggtgacggcggcgcgc-gctagggttgaatggaagatggagcaggagacggcggc 19151707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 23678581 - 23678763
Alignment:
Q  1 atcacccaagatctcagtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaaaaaggaaca 100  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||    
T  23678581 atcacccaagatctcagtcaagaccttacataaatcacaaaatctaacagccaagaggaagaggaatatgaaagaaaataccttagttgaaaaaggaaca 23678680  T
Q  101 ctgtgaaagagatcgtcggagatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||    
T  23678681 ctgtgaaacagatcgtcggagatggagcaggtgacggcggcgcgc-gctagggttgaatggaagatggagcaggagacggcggc 23678763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 17224648 - 17224471
Alignment:
Q  1 atcacccaagatctcagtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaaaaaggaaca 100  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  17224648 atcacccaagatctcagtcaagaccttacataaatcacaaaatctaacagccaagaggaagaggaatatgaaagaaaatacctgagttgaaaaaggaaca 17224549  T
Q  101 ctgtgaaagagatcgtcggagatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacg 179  Q
    |||| |||||||||||||||||||||||||| ||||| ||||| | |||||||||||| |||||||||||||| |||||    
T  17224548 ctgtaaaagagatcgtcggagatggagcaggtgacggcggcgctc-gctagggttgaatggaagatggagcagaagacg 17224471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 25872169 - 25871988
Alignment:
Q  1 atcacccaagatctcagtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaaaaaggaaca 100  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  25872169 atcacccaagatctcagtcaagaccttacataaatcacaaaatctaacagccaagaggaagaggaatatgaaagaaaata-ctgagttgaagaaggaaca 25872071  T
Q  101 ctgtgaaagagatcgtcggagatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||||| ||||||| |||||||||||||||||    
T  25872070 ctgtgaaagagattgtcggagatggagcaggtgacggcggcgcgc-gctagggttgaatggaagattgagcaggagacggcggc 25871988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 38245404 - 38245480
Alignment:
Q  16 agtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaaaaaggaa 98  Q
    |||||||| ||||||||||||||||||||||||| ||||||      ||||||||||||||||||||||||||||||||||||    
T  38245404 agtgaagaccttacataaatcacaaaatgtaacaaccaaga------ggaatatggaagaaaatacctgagttgaaaaaggaa 38245480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 410 - 471
Target Start/End: Original strand, 19151991 - 19152052
Alignment:
Q  410 tgccacataagagtggtataagatgtgttgccacctatggtggtacacctatcactgctctt 471  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||||||||||||||||||    
T  19151991 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctctt 19152052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 410 - 470
Target Start/End: Complemental strand, 25871755 - 25871695
Alignment:
Q  410 tgccacataagagtggtataagatgtgttgccacctatggtggtacacctatcactgctct 470  Q
    ||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  25871755 tgccacaaaagggtggtataaggtgtattgccacctatggtggtacacctatcactgctct 25871695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 410 - 469
Target Start/End: Original strand, 23679050 - 23679109
Alignment:
Q  410 tgccacataagagtggtataagatgtgttgccacctatggtggtacacctatcactgctc 469  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||||||||||||||||    
T  23679050 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctc 23679109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 422 - 469
Target Start/End: Complemental strand, 17224205 - 17224158
Alignment:
Q  422 gtggtataagatgtgttgccacctatggtggtacacctatcactgctc 469  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||    
T  17224205 gtggtataaggtgtattgccacctatggtggtacacctatcactgctc 17224158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 17224466 - 17224425
Alignment:
Q  143 cgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  17224466 cgcggctagggttgaacggaagatggagcgggagacggcggc 17224425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 25872009 - 25871952
Alignment:
Q  120 agatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacg 179  Q
    |||| ||||||||||||| |||| |  |||||||||||||||||||||||||||||||||    
T  25872009 agattgagcaggagacggcggcgag--gctagggttgaacggaagatggagcaggagacg 25871952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 19151747 - 19151789
Alignment:
Q  142 gcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  19151747 gcgcggctagggttgaatggaagatggatcaggagacggcggc 19151789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 23678803 - 23678845
Alignment:
Q  142 gcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  23678803 gcgcggctagggttgaatggaagatggatcaggagacggcggc 23678845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 517 - 649
Target Start/End: Original strand, 31077104 - 31077233
Alignment:
Q  517 aaatggaactcgaaacattggtttctttcttactttattactctgtaactctcatttcgttcttattcatagccaaaacaaaattatcaaaatccccaaa 616  Q
    |||||||||||||||| ||| ||||||| |||||||    ||| | | | ||| ||| |||||||||| ||||||  | ||||  ||| |||| || |||    
T  31077104 aaatggaactcgaaactttgctttctttgttactttt---ctcagcaccactcgtttggttcttattcttagccactaaaaaacaatccaaattccaaaa 31077200  T
Q  617 aacaccctcttccaccgccattcccaaacctta 649  Q
    ||||||||| |||||||||||||||||| ||||    
T  31077201 aacaccctcctccaccgccattcccaaaactta 31077233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 19151686 - 19151748
Alignment:
Q  120 agatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    |||||||||||||||||| |||||  |||||||||  ||||||||||||||||  ||||||||||    
T  19151686 agatggagcaggagacggcggcgc--ggctagggtgtaacggaagatggagcataagacggcggc 19151748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 23678742 - 23678804
Alignment:
Q  120 agatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    |||||||||||||||||| |||||  |||||||||  ||||||||||||||||  ||||||||||    
T  23678742 agatggagcaggagacggcggcgc--ggctagggtgtaacggaagatggagcataagacggcggc 23678804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 544
Target Start/End: Original strand, 31131127 - 31131172
Alignment:
Q  499 tgaaatatcttacgtacaaaatggaactcgaaacattggtttcttt 544  Q
    |||| |||||||||||| ||||||||| ||||||||||||||||||    
T  31131127 tgaagtatcttacgtaccaaatggaacccgaaacattggtttcttt 31131172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 628 - 703
Target Start/End: Original strand, 31128649 - 31128723
Alignment:
Q  628 ccaccgccattcccaaaccttatccaattttcggttccacttttgctttttccgccaacttccaccgccgcataca 703  Q
    ||||| ||||||| ||| ||| | | || ||||||||| |||||||||||||| ||||||||||| ||||||||||    
T  31128649 ccaccaccattcctaaagcttgttctatcttcggttccgcttttgctttttcc-ccaacttccacggccgcataca 31128723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 86655 - 86473
Alignment:
Q  1 atcacccaagatctcagtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaaaaaggaaca 100  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  86655 atcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaaaaaggaaca 86556  T
Q  101 ctgtgaaagagatcgtcggagatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||  |||||||| |||||||||||| ||||||||||| ||||    
T  86555 ctgtgaaagagatcgtcggagatagagcaggagacggcggcgcg-tgctagggtcgaacggaagatgaagcaggagacgacggc 86473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 1e-70; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 41546529 - 41546347
Alignment:
Q  1 atcacccaagatctcagtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaaaaaggaaca 100  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||    
T  41546529 atcacccaagatctcagtcaagaccttacataaatcacaaaatctaacagccaagaggaagaggaatatgaaagaaaataccttagttgaaaaaggaaca 41546430  T
Q  101 ctgtgaaagagatcgtcggagatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||    
T  41546429 ctgtgaaacagatcgtcggagatggagcaggtgacggcggcgcgc-gctagggttgaatggaagatggagcaggagacggcggc 41546347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 410 - 469
Target Start/End: Complemental strand, 41546098 - 41546039
Alignment:
Q  410 tgccacataagagtggtataagatgtgttgccacctatggtggtacacctatcactgctc 469  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||||||||||||||||    
T  41546098 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctc 41546039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 41546307 - 41546265
Alignment:
Q  142 gcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  41546307 gcgcggctagggttgaatggaagatggatcaggagacggcggc 41546265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 41546368 - 41546306
Alignment:
Q  120 agatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    |||||||||||||||||| ||||||  ||||||||  ||||||||||||||||  ||||||||||    
T  41546368 agatggagcaggagacggcggcgcg--gctagggtgtaacggaagatggagcataagacggcggc 41546306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 410 - 459
Target Start/End: Complemental strand, 12103249 - 12103200
Alignment:
Q  410 tgccacataagagtggtataagatgtgttgccacctatggtggtacacct 459  Q
    ||||||| ||| |||||||||| ||| |||||||||||||||||| ||||    
T  12103249 tgccacacaagggtggtataaggtgtattgccacctatggtggtatacct 12103200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 1e-70; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 55039827 - 55039645
Alignment:
Q  1 atcacccaagatctcagtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaaaaaggaaca 100  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||    
T  55039827 atcacccaagatctcagtcaagaccttacataaatcacaaaatctaacagccaagaggaagaggaatatgaaagaaaataccttagttgaaaaaggaaca 55039728  T
Q  101 ctgtgaaagagatcgtcggagatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||    
T  55039727 ctgtgaaacagatcgtcggagatggagcaggtgacggcggcgcgc-gctagggttgaatggaagatggagcaggagacggcggc 55039645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 14055784 - 14055965
Alignment:
Q  1 atcacccaagatctcagtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttgaaaaaggaaca 100  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||  |||||||||||||| |||||||| |||||    
T  14055784 atcacccaagatctcagtcaagaccttacataaatcacaaaatctaacagccaagaggaagaggaatattaaagaaaatacctgacttgaaaaa-gaaca 14055882  T
Q  101 ctgtgaaagagatcgtcggagatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| ||| | |||||| |||||||||| || |||||||||||    
T  14055883 ctgtgaaagagatcgtcggagatggagcaggtgacggcggcgcgc-gcttgcgttgaatggaagatggaacaagagacggcggc 14055965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 410 - 471
Target Start/End: Complemental strand, 55039396 - 55039335
Alignment:
Q  410 tgccacataagagtggtataagatgtgttgccacctatggtggtacacctatcactgctctt 471  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||||||||||||||||||    
T  55039396 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctctt 55039335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 410 - 470
Target Start/End: Original strand, 14056244 - 14056304
Alignment:
Q  410 tgccacataagagtggtataagatgtgttgccacctatggtggtacacctatcactgctct 470  Q
    ||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  14056244 tgccacacaagggtggtataaggtgtattgccacctatggtggtacacctatcactgctct 14056304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 14056006 - 14056047
Alignment:
Q  143 cgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  14056006 cgcggctagggttggacggaagatggagcaggagacggcggc 14056047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 55039605 - 55039563
Alignment:
Q  142 gcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  55039605 gcgcggctagggttgaatggaagatggatcaggagacggcggc 55039563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 55039666 - 55039604
Alignment:
Q  120 agatggagcaggagacggtggcgcgcggctagggttgaacggaagatggagcaggagacggcggc 184  Q
    |||||||||||||||||| ||||||  ||||||||  || |||||||||||||  ||||||||||    
T  55039666 agatggagcaggagacggcggcgcg--gctagggtgtaatggaagatggagcataagacggcggc 55039604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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