View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8939_low_7 (Length: 661)
Name: NF8939_low_7
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 583; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 18 - 651
Target Start/End: Complemental strand, 15506625 - 15505991
Alignment:
| Q |
18 |
acatccaatccaattggctgcaaataaaacctgtctagctcttattagacctctaatcgtaactagtttgtccaaactgaattattttgaagttacatct |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
15506625 |
acatccaatccaattggctgcaaataaaacttgtctagctcttattagacctctaatcgtaactagtttgtccaaagtgatttattttgaagttacatct |
15506526 |
T |
|
| Q |
118 |
actttcgtgttctaaagataatagaataaattctgacatgattcaagaacactactgttgcatagttttatttcaactttttcatcaagggtaatggtta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15506525 |
actttcgtgttctaaagataatagaataaattctgacatgattcaagaacactgctgttgcatagttttatttcaactttttcatcaagggtaatggtta |
15506426 |
T |
|
| Q |
218 |
tttttcttatggtacagaaattggattcaccaaatccaactacggaagttcttgtggcatgtctttccataacaaacttccaaccgaattcacatgcact |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15506425 |
tttttcttatggtacagaaaatggattcaccaaatccaactacggaagttcttgtggcatgtctttccataacaaacttccaaccgaattcacatgcact |
15506326 |
T |
|
| Q |
318 |
a-tcatgtcggacactcttgagcacaatatgccttaatggcttaaaatctaattaaagcttttccacatatcatcctttaatcttatgccaatgtaacca |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15506325 |
tgtcatgtcggacactcttgagcacaatatgccttaatggcttaaaagctaattaaagcttttccacatatcatcctttaatcttatgccaatgtaacca |
15506226 |
T |
|
| Q |
417 |
cgagaataaataagcatagtagagtaaataggaaatttatatatcttagaatgtcaaataacaaagtcacagtgttcagctacgacgcatacaaaattac |
516 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15506225 |
cgagaataaataagcatagtagagtaaataggaaatttatatatcttagaatgtcaaataacaaagtcacagtgttcagctacgacgcatacaaaattac |
15506126 |
T |
|
| Q |
517 |
aattactaataaattcataacattcataggttgtcacataaattgtcaaaattttgatgttcaaatatgattgctctttgcacattcacacatagggcga |
616 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
15506125 |
aattactaataaattcataacattcatagattgtcacataaattgtcaaaattttgatgttcaaatatgattgctctttgcagattcacacacagggcga |
15506026 |
T |
|
| Q |
617 |
ggtactattgctaccaaagggagatggcgtctgtg |
651 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |
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| T |
15506025 |
ggtactattgctaccaaagggagacggcgtctgtg |
15505991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 592
Target Start/End: Complemental strand, 35554438 - 35554388
Alignment:
| Q |
542 |
ataggttgtcacataaattgtcaaaattttgatgttcaaatatgattgctc |
592 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||| ||||||| |
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|
| T |
35554438 |
atagattgtcacataaattgtcgaaattttgatgttcaaatatcattgctc |
35554388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 546 - 584
Target Start/End: Original strand, 13702363 - 13702401
Alignment:
| Q |
546 |
gttgtcacataaattgtcaaaattttgatgttcaaatat |
584 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
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| T |
13702363 |
gttgtcacataagttgtcaaaattttgatgttcaaatat |
13702401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 577
Target Start/End: Complemental strand, 32692661 - 32692626
Alignment:
| Q |
542 |
ataggttgtcacataaattgtcaaaattttgatgtt |
577 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
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| T |
32692661 |
ataggttgtcacataaattatcaaaattttgatgtt |
32692626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 584
Target Start/End: Original strand, 32692749 - 32692786
Alignment:
| Q |
547 |
ttgtcacataaattgtcaaaattttgatgttcaaatat |
584 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
32692749 |
ttgtcatataaattgtcaaaattttaatgttcaaatat |
32692786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 579
Target Start/End: Original strand, 37814838 - 37814875
Alignment:
| Q |
542 |
ataggttgtcacataaattgtcaaaattttgatgttca |
579 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| |
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| T |
37814838 |
ataggttgtcacataaattagcaaaattttgatgttca |
37814875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 458
Target Start/End: Original strand, 18139028 - 18139080
Alignment:
| Q |
406 |
caatgtaaccacgagaataaataagcatagtagagtaaataggaaatttatat |
458 |
Q |
| |
|
|||| |||||||| ||||| |||| || ||||||||||||||| ||||||||| |
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|
| T |
18139028 |
caatataaccacgggaatacataaacaaagtagagtaaataggcaatttatat |
18139080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 426 - 458
Target Start/End: Complemental strand, 37875905 - 37875873
Alignment:
| Q |
426 |
ataagcatagtagagtaaataggaaatttatat |
458 |
Q |
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|
|||| |||||||||||||||||||||||||||| |
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| T |
37875905 |
ataaacatagtagagtaaataggaaatttatat |
37875873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 426 - 458
Target Start/End: Original strand, 23895776 - 23895808
Alignment:
| Q |
426 |
ataagcatagtagagtaaataggaaatttatat |
458 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
23895776 |
ataaacatagtagagtaaataggaaatttatat |
23895808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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