View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8939_low_9 (Length: 646)

Name: NF8939_low_9
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8939_low_9
NF8939_low_9
[»] chr1 (1 HSPs)
chr1 (20-646)||(6353647-6354276)


Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 20 - 646
Target Start/End: Complemental strand, 6354276 - 6353647
Alignment:
Q  20 ccaaggtgtttacaaagtgttttccaacccaataacgttagcctctaaaattactaaaagtttcctcctttggtttgacaagattaaacacacnnnnnnn 119  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||           
T  6354276 ccaaagtgtttacaaagtgttttccaacccaataacgttagcctctaaaattactaaaagtttcctcctttgatttgacaagattaaacacacaaaaaaa 6354177  T
Q  120 -gtcttggcctcttatacacctcagaaagaaagnnnnnnncagacacttgcactgcactttgcgcctcgcacagcccatgcggccaacgcagtttgtact 218  Q
     ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354176 agtcttggcctcttatacacctcagaaagaaagaaaaaaacagacacttgcactgcactttgcgcctcgcacagcccatgcggccaacgcagtttgtact 6354077  T
Q  219 ctactgacctctacacagctaccagaagcaggaccttcctgaaacgcgttattgttgcacctaggacaacagtccctgtgtccagcacatacaacagtag 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354076 ctactgacctctacacagctaccagaagcaggaccttcctgaaacgtgttattgttgcacctaggacaacagtccctgtgtccagcacatacaacagtag 6353977  T
Q  319 ccgaaaagagttatttttcttcatatatatccaacatgagatttcaaggcatgtttcaactagacaacaccagaatgctacttgcatgactctccattga 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6353976 ccgaaaagagttatttttcttcatatatatccaacatgagatttcaaggcatgtttcaactagacaacaccagaatgctacttgcatgactctccattga 6353877  T
Q  419 tgattatactcacgaaaaatagatcccttgaaatgatatatttccctcgttggttctatcgacctctaacataactgtcccttgtacgaaagtattttgt 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6353876 tgattatactcacgaaaaatagatcccttgaaatgatatatttccctcgttggttctatcgacctctaacataactgttccttgtacgaaagtattttgt 6353777  T
Q  519 gagtttcatttaaaaagtgtttgtag--nnnnnnnnnataataagaggtgtaggttaacaaaagggcatgaaggaaattacagttataattaacataaac 616  Q
    ||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6353776 gagtttcatttaaaaagtgtttgtagtttttttttttataataagaggtgtaggttaacaaaagggcatgaaggaaattacagttataattaacataaac 6353677  T
Q  617 tagaaagaaaagagcatcaaatcttttttc 646  Q
     |||||||||||||||||||||||||||||    
T  6353676 cagaaagaaaagagcatcaaatcttttttc 6353647  T

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