View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_high_17 (Length: 370)
Name: NF8940_high_17
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 363
Target Start/End: Original strand, 7670727 - 7671070
Alignment:
| Q |
20 |
tatatgtattgatggtgttggacacgacatgtgtccgacaccggaatacgccttaatctgaaaagtgtttgtacttcataagcaaagaatgaaaagtgat |
119 |
Q |
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| T |
7670727 |
tatatgtattgatggtgttggacacgacatgtgtccaacactggaacacgccttaatctgaaaagtgtttctacttcataagcaaagaatgaaaagtgat |
7670826 |
T |
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| Q |
120 |
catacatattcgagataaggaaatggaaaacataccactctccagaaacaccatcagcaagaccgttaatcctatttccagtgacacaacctacctccat |
219 |
Q |
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| T |
7670827 |
catacatattcgagataaggaaacggaaaacataccactctccagaaacaccatcagcaagaccattaatcctatttccagtgacacaacctacctccat |
7670926 |
T |
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| Q |
220 |
gatcttcttcacaacactctcatcaatagcttccaaaacagaaagagcactactcatgagttgaattggaccacgatgtctaccttcacctctaatagca |
319 |
Q |
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| T |
7670927 |
gatcttcttcacaacactctcatcaatagcttccaaaacagaaagagcactactcatgagttgaattggaccacgatgtctaccttcacctctaatagca |
7671026 |
T |
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| Q |
320 |
ctcaaatccttttcaaatactttcacttcataacctctctgctt |
363 |
Q |
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| T |
7671027 |
ctcaaatccttttcaaatactttcacttcataacctctatgctt |
7671070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 12993260 - 12993323
Alignment:
| Q |
35 |
tgttggacacgacatgtgtccgacaccggaatacgccttaatctgaaaagtgtttgtacttcata |
99 |
Q |
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| T |
12993260 |
tgttggacatgacatatgtccgacaccgaaatacg-cataatctaaaaagtgttggtgcttcata |
12993323 |
T |
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