View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8940_high_20 (Length: 333)
Name: NF8940_high_20
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_high_20 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] scaffold0254 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 3 - 333
Target Start/End: Original strand, 2140555 - 2140889
Alignment:
| Q |
3 |
gtatttggtgtccgtgtc-tgtgtttcgtacgtcagatgtgatgaaattaatgattattggaaaaacaaatttagacatgattattaactgatactt-gt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2140555 |
gtatttggtgtccgtgtcatgtgtttcgtacgtcagatgtgatgaaattaatgattattggaaaaacaaatttagacatgattattaactgatactttgt |
2140654 |
T |
|
| Q |
101 |
ataattattttgtgggcagactgcattccactatgtatttataggtgcaaactacatttgaggaagatggtatgtataacagcatgcatgacatgttgtg |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2140655 |
ataattattttgtgggcagattgcattccactatgtatttataggtgcaaactacatttgaggaagatggtatgtataacagcatgcatgacatgttgtg |
2140754 |
T |
|
| Q |
201 |
atcgctgcaaatgtgtccctcttgatcaaacttatggtaacagggataaatgtggcaaatgctatactgatatgctaactcaccatgacaaagtcaagtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2140755 |
atcgctgcaaatgtgtccctcttgatcaaacttatggtaacagggataaatgtggcaaatgctatactgatatgctaactcaccatgacaaagtcaagtg |
2140854 |
T |
|
| Q |
301 |
tccatagat--acacagagttatatatctagtagt |
333 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| |
|
|
| T |
2140855 |
tccatagatacacacagagttatatatcaagtagt |
2140889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 96 - 324
Target Start/End: Original strand, 2146892 - 2147117
Alignment:
| Q |
96 |
cttgtataattattttgtgggcagactgcattccactatgtatttataggtgcaaactacatttgaggaagatggtatgtataacagcatgcatgacatg |
195 |
Q |
| |
|
||||| || |||||||||||||||| ||||||||||||||| | |||||||||| ||||||| |||||| | | ||| || ||| |||||||||||| |
|
|
| T |
2146892 |
cttgtgtatttattttgtgggcagattgcattccactatgttatgttaggtgcaaattacatttaaggaaggtagaatgcatgacacaatgcatgacatg |
2146991 |
T |
|
| Q |
196 |
ttgtgatcgctgcaaatgtgtccctcttgatcaaacttatggtaacagggataaatgtggcaaatgctatactgatatgctaactcaccatgacaaagtc |
295 |
Q |
| |
|
|||||||||||| |||||||||||| || ||||||||||||||| || ||||||||||| ||||| |||||||||| |||| || ||| || || |
|
|
| T |
2146992 |
ttgtgatcgctgtcaatgtgtccctcctg---gaacttatggtaacagagaaaaatgtggcaagtgctacactgatatgcgaactttcctcgacgaaatc |
2147088 |
T |
|
| Q |
296 |
aagtgtccatagatacacagagttatata |
324 |
Q |
| |
|
| ||| ||||||||||||| | ||||||| |
|
|
| T |
2147089 |
atgtgcccatagatacacacacttatata |
2147117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 274
Target Start/End: Original strand, 2125689 - 2125855
Alignment:
| Q |
105 |
ttattttgtgggcagactgcattccactatgtatttataggtgcaaactacatttgaggaagatggtatgtataacagcatgcatgacatgttgtgatcg |
204 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||| || ||||| ||| | | ||| |||| |||||||||||| |||||||| || |
|
|
| T |
2125689 |
ttattttgtgggcagattgcattccactatgtggttataggtgccaaaaacattctaggcaaaacacatgcataagagcatgcatgacttgttgtgaccg |
2125788 |
T |
|
| Q |
205 |
ctgcaaatgtgtccctcttgatcaaacttatggtaacagggataaatgtggcaaatgctatactgatatg |
274 |
Q |
| |
|
||||||||||| |||| | |||||||||||| || || ||||||||||| || || ||||||||| |
|
|
| T |
2125789 |
gtgcaaatgtgttcctccag---gaacttatggtaatagagaaaaatgtggcaagtgttacactgatatg |
2125855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 96 - 324
Target Start/End: Original strand, 23353 - 23581
Alignment:
| Q |
96 |
cttgtataattattttgtgggcagactgcattccactatgtatttataggtgcaaactacatttgaggaagatggtatgtataacagcatgcatgacatg |
195 |
Q |
| |
|
||||| || |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23353 |
cttgtgtatttattttgtgggcagattgcattccactatgtggttataggtgcaaactacatttgaggaagatggtatgtataacagcatgcatgacatg |
23452 |
T |
|
| Q |
196 |
ttgtgatcgctgcaaatgtgtccctcttgatcaaacttatggtaacagggataaatgtggcaaatgctatactgatatgctaactcaccatgacaaagtc |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||| |||| || ||| || || |
|
|
| T |
23453 |
ttgtgatcgctgcaaatgtgtccctcttgatcaaacttatggtaacagagaaaaatgtggcaagtgctacactgatatgcgaactttcctcgacgaaatc |
23552 |
T |
|
| Q |
296 |
aagtgtccatagatacacagagttatata |
324 |
Q |
| |
|
| ||| ||||||||||||| | ||||||| |
|
|
| T |
23553 |
atgtgcccatagatacacacacttatata |
23581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University