View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8940_high_3 (Length: 883)

Name: NF8940_high_3
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8940_high_3
NF8940_high_3
[»] chr1 (8 HSPs)
chr1 (168-869)||(51679471-51680171)
chr1 (168-388)||(41405362-41405582)
chr1 (25-171)||(41405605-41405751)
chr1 (109-171)||(51680194-51680256)
chr1 (411-484)||(24764158-24764231)
chr1 (409-468)||(41405276-41405335)
chr1 (25-171)||(24763778-24763930)
chr1 (220-322)||(24763941-24764047)
[»] chr7 (4 HSPs)
chr7 (253-480)||(4093118-4093354)
chr7 (409-469)||(48072281-48072341)
chr7 (25-111)||(48071858-48071944)
chr7 (25-77)||(4093042-4093094)
[»] chr5 (1 HSPs)
chr5 (409-480)||(8224403-8224474)
[»] chr3 (2 HSPs)
chr3 (409-480)||(3267695-3267766)
chr3 (409-480)||(43591518-43591589)
[»] chr4 (2 HSPs)
chr4 (417-480)||(35478207-35478270)
chr4 (442-480)||(16301406-16301444)
[»] chr8 (2 HSPs)
chr8 (409-480)||(38819651-38819722)
chr8 (436-479)||(22484897-22484940)
[»] chr2 (1 HSPs)
chr2 (28-111)||(44001590-44001673)
[»] chr6 (2 HSPs)
chr6 (442-480)||(13040992-13041030)
chr6 (442-480)||(13058495-13058533)


Alignment Details
Target: chr1 (Bit Score: 601; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 168 - 869
Target Start/End: Complemental strand, 51680171 - 51679471
Alignment:
Q  168 atcatcactaagaaaatagatctgttcaaaactccgacgagaactgagcttggatccgtcctcgccaccgcaaatccgatcataacacgtttacaggact 267  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51680171 atcatcactgagaaaatagatctgttcaaaactccgacgagaactgagcttggatccgtcctcgccaccgcagatccgatcataacacgtttacaggact 51680072  T
Q  268 gaaagaagaaaagacggcagcagtgacgacgacggtgattagtgagagaagttacaacggcggcggtggctggagaaccggcgctgaacatagagaagga 367  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  51680071 gaaagaagaaaagacggcagcagtgacgacggcggtgattagtgagagaagttacaacggcggcggtggctggagaaccggcgttgaacatagagaagga 51679972  T
Q  368 tggccgagagagatggtgagaaaatttnnnnnnnnntaatgaaaaagatgtataaaactagagtgacatatggcgtctgtattgtgtttggttttttgtg 467  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51679971 tggccgagagagatggtgagaaaatttaaaaaaaaataatgaaaaagatgtataaaactagagtgacatatggcgtctgtattgtgtttggttttttgtg 51679872  T
Q  468 ttcatttatcattcctggaggnnnnnnnctactgtgaactactgcgcatttcatagttatcaaggaggcgtgaaaatattgtatgtggcttttatttctt 567  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51679871 ttcatttatcattcctggaggaaaaaaactactgtgaactactgcgcatttcatagttatcaaggaggcgtgaaaatattgtatgtggcttttatttctt 51679772  T
Q  568 tggcaacagttaaggagtcggaaagggaatagccagaaagtgctcaagcacgtctcatttatacatgcaaaaaggattatcttgtgacctgctttccatg 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51679771 tggcaacagttaaggagtcggaaagggaatagccagaaagtgctcaagcacgtctcatttatacatgaaaaaaggattatcttgtgacctgctttccatg 51679672  T
Q  668 gttggaaattnnnnnnncacggatctatggtttaaccaaaaaacacagtgaatcatgcctgatgttcttgacgttaagtttgtctggtatcatgcaatgc 767  Q
    ||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51679671 gttggaaattaaaaaaacacggatctatggtttaacc-aaaaacacagtgaatcatgcctgatgttcttgacgttaagtttgtctggtatcatgcaatgc 51679573  T
Q  768 ccattacttgcattgcaatattacgaaactaattctgccatatatcattgatatcttgctcaatgatttttctccacaatcctaatacctaatgcgtgat 867  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  51679572 ccattacttgcattgcaatattacgaaactaattctgccatatatcattgatatcttgctcaatgatttttctccacaatcctaatacctaatgcgtaat 51679473  T
Q  868 gt 869  Q
    ||    
T  51679472 gt 51679471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 168 - 388
Target Start/End: Complemental strand, 41405582 - 41405362
Alignment:
Q  168 atcatcactaagaaaatagatctgttcaaaactccgacgagaactgagcttggatccgtcctcgccaccgcaaatccgatcataacacgtttacaggact 267  Q
    ||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||    
T  41405582 atcatcactgagaaaacagatctgttcaaaactccgatgagaactgagcttggatccgtcgttgccaccgcagatccgatcataacacgtttacaggact 41405483  T
Q  268 gaaagaagaaaagacggcagcagtgacgacgacggtgattagtgagagaagttacaacggcggcggtggctggagaaccggcgctgaacatagagaagga 367  Q
    ||||||||||||| ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41405482 gaaagaagaaaaggcggcagcagtgacgacggcggtgatcggtgagagaagttacaacggcggcggtggctggagaaccggcgttgaacatagagaagga 41405383  T
Q  368 tggccgagagagatggtgaga 388  Q
    |||||||||||||||||||||    
T  41405382 tggccgagagagatggtgaga 41405362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 41405751 - 41405605
Alignment:
Q  25 ctcccccaccaccgtcctcatcgctaaccactactgccatcatcctcaccatccccgcagtcccttcaatccattcatcacgaccaagacttcacatcac 124  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41405751 ctcccccaccaccgtcctcatcgctaaccactactgccatcgtactcaccatccccgcagtcccttcattccattcatcacgaccaagacttcacatcac 41405652  T
Q  125 cgacgaccccttcttctccctcacaccgccggaatctgttcggatca 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41405651 cgacgaccccttcttctccctcacaccgccggaatctgttcggatca 41405605  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 51680256 - 51680194
Alignment:
Q  109 caagacttcacatcaccgacgaccccttcttctccctcacaccgccggaatctgttcggatca 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51680256 caagacttcacatcaccgacgaccccttcttctccctcacaccgccggaatctgttcggatca 51680194  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 411 - 484
Target Start/End: Original strand, 24764158 - 24764231
Alignment:
Q  411 aaagatgtataaaactagagtgacatatggcgtctgtattgtgtttggttttttgtgttcatttatcattcctg 484  Q
    ||||||||||||  ||| ||||| |||||  |||||||||||||||| ||||||||||||| ||||||||||||    
T  24764158 aaagatgtataatgctacagtgatatatgatgtctgtattgtgtttgattttttgtgttcacttatcattcctg 24764231  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 409 - 468
Target Start/End: Complemental strand, 41405335 - 41405276
Alignment:
Q  409 aaaaagatgtataaaactagagtgacatatggcgtctgtattgtgtttggttttttgtgt 468  Q
    ||||||||||||||| ||| ||||| |||||| ||||||||||||||||| |||||||||    
T  41405335 aaaaagatgtataaagctacagtgatatatggtgtctgtattgtgtttggatttttgtgt 41405276  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 24763778 - 24763930
Alignment:
Q  25 ctcccccaccaccgtcctcatcgctaaccactactgccatcatcctcaccatc-------cccgcagtcccttcaatccattcatcacgaccaagacttc 117  Q
    ||||||||||||| |||||||||||||||||| || | ||| |||||||||||        || ||||||||||||||| |||||||| | || ||| ||    
T  24763778 ctcccccaccaccatcctcatcgctaaccactgcttcaatcgtcctcaccatcatcgcagaccacagtcccttcaatccgttcatcactatcaggacatc 24763877  T
Q  118 acatcaccgacgaccccttcttctccctcacaccgccggaatctgttcggatca 171  Q
    |   | ||| ||| || | ||||||||||| |||||||||||||||| ||||||    
T  24763878 atgccgccggcga-ccttacttctccctcaaaccgccggaatctgttgggatca 24763930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 24763941 - 24764047
Alignment:
Q  220 gatccgtcctcgccaccgcaaatccgatcataac----acgtttacaggactgaaagaagaaaagacggcagcagtgacgacgacggtgattagtgagag 315  Q
    |||| ||||| ||| ||||| |||||||||||||    ||| |||||  | |||||||| ||||||||||||| ||||||| | ||||||  ||||||||    
T  24763941 gatctgtccttgccgccgcagatccgatcataactcacacgattacaaaaatgaaagaacaaaagacggcagcggtgacgatggcggtgaacagtgagag 24764040  T
Q  316 aagttac 322  Q
    |||||||    
T  24764041 aagttac 24764047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 2e-51; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 253 - 480
Target Start/End: Original strand, 4093118 - 4093354
Alignment:
Q  253 cacgtttacaggactgaaagaagaaaagacggcagcagtgacgacgacggtgattagtgagagaagttacaacggcggcggtggctggagaaccggcgct 352  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| ||||||||| | ||||||||||| |    
T  4093118 cacgattacaggactgaaagaagaaaagacgacagcggtgacgacgacggtgatcagtgagagaagttacaacgacggcggtggttagagaaccggcgtt 4093217  T
Q  353 gaacatagagaaggatggccgagagagatggtga------------gaaaatttnnnnnnnnntaatgaaaaagatgtataaaactagagtgacatatgg 440  Q
    ||||||||||||||||||||| ||||||||||||            ||||||||          ||  ||||||||||||||| ||| ||||||||||||    
T  4093218 gaacatagagaaggatggccgggagagatggtgagagagaaggaaagaaaatttataaaaa---aaaaaaaaagatgtataaagctacagtgacatatgg 4093314  T
Q  441 cgtctgtattgtgtttggttttttgtgttcatttatcatt 480  Q
     ||||||||||||||| |||||||||||||||||||||||    
T  4093315 tgtctgtattgtgtttagttttttgtgttcatttatcatt 4093354  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 409 - 469
Target Start/End: Original strand, 48072281 - 48072341
Alignment:
Q  409 aaaaagatgtataaaactagagtgacatatggcgtctgtattgtgtttggttttttgtgtt 469  Q
    ||||||||||||||  ||| ||| |||||||| ||||||||||||||||||||||||||||    
T  48072281 aaaaagatgtataatgctacagtcacatatggtgtctgtattgtgtttggttttttgtgtt 48072341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 48071858 - 48071944
Alignment:
Q  25 ctcccccaccaccgtcctcatcgctaaccactactgccatcatcctcaccatccccgcagtcccttcaatccattcatcacgaccaa 111  Q
    ||||||||||||||||||||||  | ||||||||| ||||||||||| |||||  | |  |||||||||| | |||| |||||||||    
T  48071858 ctcccccaccaccgtcctcatcagttaccactactaccatcatcctcgccatcatctccatcccttcaattctttcaccacgaccaa 48071944  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 4093042 - 4093094
Alignment:
Q  25 ctcccccaccaccgtcctcatcgctaaccactactgccatcatcctcaccatc 77  Q
    ||||||||||||||||||| ||| ||||| ||||||||||| | |||||||||    
T  4093042 ctcccccaccaccgtcctcgtcgataacctctactgccatcgttctcaccatc 4093094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 409 - 480
Target Start/End: Complemental strand, 8224474 - 8224403
Alignment:
Q  409 aaaaagatgtataaaactagagtgacatatggcgtctgtattgtgtttggttttttgtgttcatttatcatt 480  Q
    ||||||||||||||| |||||||  ||||||| ||||||||||||||||  ||||||||| |||||||||||    
T  8224474 aaaaagatgtataaagctagagtaccatatggtgtctgtattgtgtttgcatttttgtgtccatttatcatt 8224403  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 409 - 480
Target Start/End: Original strand, 3267695 - 3267766
Alignment:
Q  409 aaaaagatgtataaaactagagtgacatatggcgtctgtattgtgtttggttttttgtgttcatttatcatt 480  Q
    ||||||||||||||| ||| |||||  ||||| ||||||||||||||||| |||||||||||| ||||||||    
T  3267695 aaaaagatgtataaagctacagtgatgtatggtgtctgtattgtgtttggatttttgtgttcacttatcatt 3267766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 409 - 480
Target Start/End: Original strand, 43591518 - 43591589
Alignment:
Q  409 aaaaagatgtataaaactagagtgacatatggcgtctgtattgtgtttggttttttgtgttcatttatcatt 480  Q
    ||||||||||||||| ||| |||  ||||||| ||||||||||||||||  ||||||||| |||||||||||    
T  43591518 aaaaagatgtataaagctacagtaccatatggtgtctgtattgtgtttgcatttttgtgtccatttatcatt 43591589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 417 - 480
Target Start/End: Original strand, 35478207 - 35478270
Alignment:
Q  417 gtataaaactagagtgacatatggcgtctgtattgtgtttggttttttgtgttcatttatcatt 480  Q
    ||||||||||| |||| |||| |  |||||||||||||||| ||||||||||||||||||||||    
T  35478207 gtataaaactacagtgtcatacgatgtctgtattgtgtttgattttttgtgttcatttatcatt 35478270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 16301444 - 16301406
Alignment:
Q  442 gtctgtattgtgtttggttttttgtgttcatttatcatt 480  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  16301444 gtctgtattgtgttgggttttttgtgttcagttatcatt 16301406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 409 - 480
Target Start/End: Original strand, 38819651 - 38819722
Alignment:
Q  409 aaaaagatgtataaaactagagtgacatatggcgtctgtattgtgtttggttttttgtgttcatttatcatt 480  Q
    ||||||||||||||| ||| |||  ||||||| ||| ||||||||||||  ||||||||| |||||||||||    
T  38819651 aaaaagatgtataaagctacagtaccatatggtgtccgtattgtgtttgcatttttgtgtccatttatcatt 38819722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 479
Target Start/End: Original strand, 22484897 - 22484940
Alignment:
Q  436 tatggcgtctgtattgtgtttggttttttgtgttcatttatcat 479  Q
    ||||| |||||||||||||||  |||||||||||||||||||||    
T  22484897 tatggtgtctgtattgtgtttaattttttgtgttcatttatcat 22484940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 44001590 - 44001673
Alignment:
Q  28 ccccaccaccgtcctcatcgctaaccactactgccatcatcctcaccatccccgcagtcccttcaatccattcatcacgaccaa 111  Q
    |||||||||||||||||||  | ||||||||| ||||||||||| |||||  |   ||||||||||| | |||| |||||||||    
T  44001590 ccccaccaccgtcctcatcaattaccactactaccatcatcctcgccatcatcttcgtcccttcaattctttcaccacgaccaa 44001673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 13041030 - 13040992
Alignment:
Q  442 gtctgtattgtgtttggttttttgtgttcatttatcatt 480  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  13041030 gtctctattgtgtttggttttgtgtgttcatttatcatt 13040992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 442 - 480
Target Start/End: Complemental strand, 13058533 - 13058495
Alignment:
Q  442 gtctgtattgtgtttggttttttgtgttcatttatcatt 480  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  13058533 gtctgtattgtgtttgattttgtgtgttcatttatcatt 13058495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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