View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_high_31 (Length: 234)
Name: NF8940_high_31
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_high_31 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 33589 - 33798
Alignment:
| Q |
1 |
ataataaagcaatgaaaaaagggtttgtggtggtcctatgctcttggctttctttggtctctaaagcagaaaccaaacgtggggtttgtggtggatcata |
100 |
Q |
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| T |
33589 |
ataataaagcaatgaaaaaagggtttgtggtggtcctatgctcttggctttctttggtctctaaagcagaaaccaaacgtggggtttgtggtggatcata |
33688 |
T |
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| Q |
101 |
tgagatgtctcaattatcttaccaaagagatacactttgggtcccattatttctgccaagctacaataatataaaagaaaggaatgtttaaaaccataca |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33689 |
tgagatgtcccaattatcttaccaaagagatacactttgggtcccattatttctgccaagctacaataatataaaagaaaggaatgtttaaaaccataca |
33788 |
T |
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| Q |
201 |
atatatacta |
210 |
Q |
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|||||||||| |
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| T |
33789 |
atatatacta |
33798 |
T |
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