View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8940_low_1 (Length: 1322)
Name: NF8940_low_1
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 1211; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 1211; E-Value: 0
Query Start/End: Original strand, 19 - 1315
Target Start/End: Original strand, 17820660 - 17821958
Alignment:
| Q |
19 |
aaaagaccaaaacttgcatgtactcttgtccttattaaccaagtccaccacacacattcaaaatgctatggacacagccaatgttatcaaacgccgaatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17820660 |
aaaagaccaaaacttgcatgtactcttgtccttattaacaaagtccaccacacacattcaaaatgctatggacacagccagtgttatcaaacgccgaatt |
17820759 |
T |
|
| Q |
119 |
aacagccctagagaagaaattgctttgagtgactgtgaacaactaatggacttgtccatgaacagaatttgggacacgatgttaaagctaacaacaaata |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17820760 |
aacagccctagagaagaaattgctttgagtgactgtgaacaactaatggacttgtccatgaacagaatttgggacacgatgttaaagctaacaaaaaata |
17820859 |
T |
|
| Q |
219 |
atattgactcacagcaagatgcacatacatggctaagcagtgtgctcactaaccatgcaacttgcttggatggattagaaggttcatctcgggtcgttat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17820860 |
atattgactcacagcaagatgcacatacatggctaagcagtgtgctcactaaccatgcaacttgcttggatggattagaaggttcatctcgggtcgttat |
17820959 |
T |
|
| Q |
319 |
ggaaaatgaccttcaggacttgatatcaagagctagatcttctctagctgtgtttcttgttgtttttcctcaaaaggatcgtgaccaattcattgatgaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17820960 |
ggaaaatgaccttcaggacttgatatcaagagctagatcttctctagctgtgtttcttgttgtttttcctcaaaaggatcgtgaccaattcattgatgaa |
17821059 |
T |
|
| Q |
419 |
acattgattggagaatttccatcgtgggttacaagcaaagatcggaggcttttggagaccgcggttggggacatagaggcaaatgttgtcgtggctcagg |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
17821060 |
acattgattggagaatttccatcgtgggttacaagcaaagatcggaggcttttggagaccgcggttggggacataaaggcaaatgttgtcgtagctcagg |
17821159 |
T |
|
| Q |
519 |
atgggagtggcaagttcaagactgtggctgaggctgtggcatctgcacctgacaaaggtaagacaaagtatgttatctatgtgaaaaacggaacatacaa |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17821160 |
atgggagtggcaagttcaagactgtggctgaggctgtggcatctgcacctgacaacggtaagacaaagtatgttatctatgtgaaaaagggaacatacaa |
17821259 |
T |
|
| Q |
619 |
agagaacgtagaaattggttcgnnnnnnncaaacgtgatgctcgttggtgatggaatggatgcaacaataatcacaggaaacttaaattttatcgatggg |
718 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17821260 |
agagaacgtagaaattggttcgaaaaaaacaaatgtgatgctcgttggtgatggaatggatgcaacaataatcacaggaaacttaaattttatcgatggg |
17821359 |
T |
|
| Q |
719 |
acaacgaccttcaaaagttcaactgttggtatgaaccttccactttttgtaattaccatttcattttcatgtatacttataaattttgtcttcttttctt |
818 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17821360 |
acaacgaccttcaaaagttcaactgttggtatgaaccttccactttttgtatttaccatttcattttcatgtatacttataaattttgtcttcttttctt |
17821459 |
T |
|
| Q |
819 |
gaactctcttcaatt--tctaagtcatattcttctcctgtcttttgtattagatctaaattaatttaccaagttcatactctaattgtatggaatgccta |
916 |
Q |
| |
|
|||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17821460 |
gaactcgcttcaatttctctaagtaatattcttctcctgtcttttgtattagatctaaattaatttaccaagttcatactctaattgtatggaatgccta |
17821559 |
T |
|
| Q |
917 |
cccaaatatcaacactaaccaaataaaaatctggttttgcagctgcggttggggatgggtttatagcacaagatatttggttccaaaatacggcaggcgc |
1016 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17821560 |
cccaaatatcaacactaaccaaataaaaatctggttttgcagctgcggttggggatgggtttatagcacaagatatttggttccaaaatatggcaggcgc |
17821659 |
T |
|
| Q |
1017 |
agcaaagcaccaggcagtggctctccgtgtcggctctgaccaatctgtcatcaaccgttgccgcattgacgcctttcaagacactctttacgcacactcc |
1116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17821660 |
agcaaagcaccaggcagtggctctccgtgtcggctctgaccaatctgtcatcaaccgttgccgcattgacgcctttcaagacactctttacgcacactcc |
17821759 |
T |
|
| Q |
1117 |
aaccggcagttttaccgtgactctgtcattacaggtaccattgacttcatctttggaaatgcagctgttgtgttccagaagtgcaagttggtggcccgta |
1216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17821760 |
aaccggcagttttaccgtgactctgtcattacaggtaccattgacttcatctttggaaatgcagctgttgtgttccagaagtgcaagttggtggcccgta |
17821859 |
T |
|
| Q |
1217 |
aacccatggccaaccaaaacaatatgtttacagcccaaggtcgagaagaccccggtcaaaacacaggaacttcaattcaacaatgtgatctaacaccaa |
1315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
17821860 |
aacccatggccaaccaaaacaatatgtttacagcccaaggtcgagaagaccccggtcaaaacacaggtacttcaattcaacaatgtgacctaacaccaa |
17821958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 50 - 751
Target Start/End: Original strand, 17776224 - 17776925
Alignment:
| Q |
50 |
ttattaaccaagtccaccacacacattcaaaatgctatggacacagccaatgttatcaaacgccgaattaacagccctagagaagaaattgctttgagtg |
149 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||| || |||||||| || ||||| |||||||||||| |||| ||||||||||| ||||||||||||| || |
|
|
| T |
17776224 |
ttattaaccaaatccaccgcacacattcgaaaggcaatggacacggctaatgtgatcaaacgccgagttaatagccctagagaggaaattgctttgaatg |
17776323 |
T |
|
| Q |
150 |
actgtgaacaactaatggacttgtccatgaacagaatttgggacacgatgttaaagctaacaacaaataatattgactcacagcaagatgcacatacatg |
249 |
Q |
| |
|
||||||| || ||||||| ||||||||| | ||| |||||||| | |||| | ||||| | |||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
17776324 |
actgtgaggaattaatggatttgtccatggatagagtttgggactcagtgttgactctaaccaaaaataacattgactcacagcatgatgcacacacatg |
17776423 |
T |
|
| Q |
250 |
gctaagcagtgtgctcactaaccatgcaacttgcttggatggattagaaggttcatctcgggtcgttatggaaaatgaccttcaggacttgatatcaaga |
349 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||| || ||| |
|
|
| T |
17776424 |
gctaagtagtgtgctcactaaccatgcaacttgtttggatggattagaaggttcatctcgggtcgttatggagagtgatcttcatgacttgatctccaga |
17776523 |
T |
|
| Q |
350 |
gctagatcttctctagctgtgtttcttgttgtttttcctcaaaaggatcgtgaccaattcattgatgaaacattgattggagaatttccatcgtgggtta |
449 |
Q |
| |
|
|||||||||||||| || ||| || || ||| || |||| ||||| | ||| |||||||||||||| ||||| ||| || ||||| || ||||| | |
|
|
| T |
17776524 |
gctagatcttctcttgccgtgcttgtttctgtcttgcctccaaaggctaacgacggattcattgatgaaaaattgaatggtgactttccctcttgggtga |
17776623 |
T |
|
| Q |
450 |
caagcaaagatcggaggcttttggagaccgcggttggggacatagaggcaaatgttgtcgtggctcaggatgggagtggcaagttcaagactgtggctga |
549 |
Q |
| |
|
|||| || ||||| || |||||||| | | |||||||| ||| |||| |||||||| ||||||||||| || || ||||||||||||||||||||| | |
|
|
| T |
17776624 |
caagtaaggatcgaagacttttggaatcttcagttggggatataaaggccaatgttgtggtggctcaggacggcagcggcaagttcaagactgtggctca |
17776723 |
T |
|
| Q |
550 |
ggctgtggcatctgcacctgacaaaggtaagacaaagtatgttatctatgtgaaaaacggaacatacaaagagaacgtagaaattggttcgnnnnnnnca |
649 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||| ||||||||| ||||||||||| |||||||||||||||||| | |||||||| | || |
|
|
| T |
17776724 |
agctgtagcatctgcaccagacaacggtaagacaaggtatgttatatatgtgaaaaagggaacatacaaagagaacattgaaattggcaagaaaaagaca |
17776823 |
T |
|
| Q |
650 |
aacgtgatgctcgttggtgatggaatggatgcaacaataatcacaggaaacttaaattttatcgatgggacaacgaccttcaaaagttcaactgttggta |
749 |
Q |
| |
|
|| |||||||| || |||||||| ||||||||||||||||||||||| | ||||||||| |||||||| ||||| |||||||||||| |||||||||||| |
|
|
| T |
17776824 |
aatgtgatgcttgtgggtgatggtatggatgcaacaataatcacaggcagcttaaatttcatcgatggaacaaccaccttcaaaagtgcaactgttggta |
17776923 |
T |
|
| Q |
750 |
tg |
751 |
Q |
| |
|
|| |
|
|
| T |
17776924 |
tg |
17776925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 53 - 752
Target Start/End: Original strand, 17806919 - 17807618
Alignment:
| Q |
53 |
ttaaccaagtccaccacacacattcaaaatgctatggacacagccaatgttatcaaacgccgaattaacagccctagagaagaaattgctttgagtgact |
152 |
Q |
| |
|
|||||||| |||||||||||||||| ||| || |||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||| || || |
|
|
| T |
17806919 |
ttaaccaaatccaccacacacattcgaaaggccatggacacggctaatgttatcaaacgccgaattaacagccctagagaagaaaatgctttgaatgtct |
17807018 |
T |
|
| Q |
153 |
gtgaacaactaatggacttgtccatgaacagaatttgggacacgatgttaaagctaacaacaaataatattgactcacagcaagatgcacatacatggct |
252 |
Q |
| |
|
||||| |||||||| ||||||||||| | ||| |||||||| | |||||| || |||| | ||||||| |||||||||||||||||||| || ||||| |
|
|
| T |
17807019 |
gtgaaaaactaatgaacttgtccatggaaagagtttgggactcagtgttaactctcacaaaagataatatggactcacagcaagatgcacacacttggct |
17807118 |
T |
|
| Q |
253 |
aagcagtgtgctcactaaccatgcaacttgcttggatggattagaaggttcatctcgggtcgttatggaaaatgaccttcaggacttgatatcaagagct |
352 |
Q |
| |
|
||| ||||||||||| |||||||||||||| |||||||||||||||||| | ||||||| ||||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
17807119 |
aagtagtgtgctcacaaaccatgcaacttgtttggatggattagaaggtacgtctcgggctgttatggaaaatgacattcaggacttaatagcaagagct |
17807218 |
T |
|
| Q |
353 |
agatcttctctagctgtgtttcttgttgtttttcctcaaaaggatcgtgaccaattcattgatgaaacattgattggagaatttccatcgtgggttacaa |
452 |
Q |
| |
|
||||| |||||||| ||| || ||| ||||| |||| |||||||| ||| |||||||||||||| |||||| ||| || ||||| || ||||| |||| |
|
|
| T |
17807219 |
agatcatctctagccgtgcttgttgccgttttacctccaaaggatcacgacgaattcattgatgaatcattgaatggtgactttccctcttgggtaacaa |
17807318 |
T |
|
| Q |
453 |
gcaaagatcggaggcttttggagaccgcggttggggacatagaggcaaatgttgtcgtggctcaggatgggagtggcaagttcaagactgtggctgaggc |
552 |
Q |
| |
|
| |||||||| |||||||||||| | | ||||| ||| || |||| |||||||| |||||| | || ||||||||||||||||||||||| |||||||| |
|
|
| T |
17807319 |
gtaaagatcgaaggcttttggagtcttcagttggagacgtaaaggccaatgttgtggtggctaaagacgggagtggcaagttcaagactgttgctgaggc |
17807418 |
T |
|
| Q |
553 |
tgtggcatctgcacctgacaaaggtaagacaaagtatgttatctatgtgaaaaacggaacatacaaagagaacgtagaaattggttcgnnnnnnncaaac |
652 |
Q |
| |
|
||| |||||||||||| ||||||||| | ||| |||||||||||| |||||||| |||| ||||||||||| |||||||| | | | ||| |
|
|
| T |
17807419 |
tgttgcatctgcacctaacaaaggtacggcaaggtatgttatctacgtgaaaaagggaatctacaaagagaatgtagaaatcgctagttcaaagacgaac |
17807518 |
T |
|
| Q |
653 |
gtgatgctcgttggtgatggaatggatgcaacaataatcacaggaaacttaaattttatcgatgggacaacgaccttcaaaagttcaactgttggtatga |
752 |
Q |
| |
|
||||||||| | ||||| || ||||||||||| ||||||||||| | |||||||| | ||||| ||| |||||| ||| | ||||||||||||||| |
|
|
| T |
17807519 |
gtgatgctcttgggtgacggtatggatgcaacgataatcacaggcagcttaaattacgttgatggaacaggcaccttccaaactgcaactgttggtatga |
17807618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 137; E-Value: 7e-71
Query Start/End: Original strand, 948 - 1304
Target Start/End: Original strand, 17776994 - 17777350
Alignment:
| Q |
948 |
tggttttgcagctgcggttggggatgggtttatagcacaagatatttggttccaaaatacggcaggcgcagcaaagcaccaggcagtggctctccgtgtc |
1047 |
Q |
| |
|
|||||||| |||||| ||||| |||||||||||||| || || ||| |||||||||| || |||||| || |||||||||||||| ||||| |||||| |
|
|
| T |
17776994 |
tggttttgtagctgctgttggagatgggtttatagctcaggacattaggttccaaaacacagcaggcccacagaagcaccaggcagttgctcttcgtgtc |
17777093 |
T |
|
| Q |
1048 |
ggctctgaccaatctgtcatcaaccgttgccgcattgacgcctttcaagacactctttacgcacactccaaccggcagttttaccgtgactctgtcatta |
1147 |
Q |
| |
|
||| |||| ||||| ||||||||||| ||| ||||| || |||||||||||||| || |||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
17777094 |
ggcgctgatcaatccgtcatcaaccgctgcaaaattgatgcatttcaagacactctctatgcacactccaaccgacaattttaccgtgactcatacatta |
17777193 |
T |
|
| Q |
1148 |
caggtaccattgacttcatctttggaaatgcagctgttgtgttccagaagtgcaagttggtggcccgtaaacccatggccaaccaaaacaatatgtttac |
1247 |
Q |
| |
|
| |||||| ||||||| ||||||||||| ||||||||||| ||||||||| |||| | | |||||| |||||||||||||||||||| || ||| | || |
|
|
| T |
17777194 |
ccggtaccgttgactttatctttggaaacgcagctgttgttttccagaagagcaaacttgcggcccgaaaacccatggccaaccaaaaaaacatggtcac |
17777293 |
T |
|
| Q |
1248 |
agcccaaggtcgagaagaccccggtcaaaacacaggaacttcaattcaacaatgtga |
1304 |
Q |
| |
|
|||||||||||||||||||| || ||||| | |||||||||||| |||||||| |
|
|
| T |
17777294 |
tgcccaaggtcgagaagacccaaaccagaacactgcaacttcaattcagcaatgtga |
17777350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 130; E-Value: 1e-66
Query Start/End: Original strand, 948 - 1301
Target Start/End: Original strand, 17807687 - 17808040
Alignment:
| Q |
948 |
tggttttgcagctgcggttggggatgggtttatagcacaagatatttggttccaaaatacggcaggcgcagcaaagcaccaggcagtggctctccgtgtc |
1047 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||||||| || || ||| | |||||||| |||||||| || ||||| |||||||| ||||| || ||| |
|
|
| T |
17807687 |
tggttttgtagctgctgttggggattggtttatagctcaggacattggattccaaaacacggcaggtccacagaagcatcaggcagttgctctgcgcgtc |
17807786 |
T |
|
| Q |
1048 |
ggctctgaccaatctgtcatcaaccgttgccgcattgacgcctttcaagacactctttacgcacactccaaccggcagttttaccgtgactctgtcatta |
1147 |
Q |
| |
|
|||||||| | ||||||||| ||||||||| ||||| || |||||||||||||| ||||||||| ||||||| || |||||||||||||| |||||| |
|
|
| T |
17807787 |
ggctctgatcgatctgtcattaaccgttgcaaaattgatgcatttcaagacactctatacgcacacaccaaccgacaattttaccgtgactccttcatta |
17807886 |
T |
|
| Q |
1148 |
caggtaccattgacttcatctttggaaatgcagctgttgtgttccagaagtgcaagttggtggcccgtaaacccatggccaaccaaaacaatatgtttac |
1247 |
Q |
| |
|
| |||||||||||||| ||||||||| | |||||||||||||| ||||||||||| | |||||||| || |||||||||||||||||||| ||| | || |
|
|
| T |
17807887 |
ccggtaccattgactttatctttggagacgcagctgttgtgttgcagaagtgcaaactcgtggcccgaaagcccatggccaaccaaaacaacatggtcac |
17807986 |
T |
|
| Q |
1248 |
agcccaaggtcgagaagaccccggtcaaaacacaggaacttcaattcaacaatg |
1301 |
Q |
| |
|
|||||| |||||| |||||| || ||||| | |||||||||||| ||||| |
|
|
| T |
17807987 |
agcccagggtcgaatagacccaaaccagaacaccgcaacttcaattcagcaatg |
17808040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University