View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_low_12 (Length: 605)
Name: NF8940_low_12
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Complemental strand, 34613264 - 34612679
Alignment:
| Q |
1 |
ctttagccttacaaatgcaacaaacacactgccataggggatgataatgctccacttcttcccaaaaactcttcaattgagtataataatcaataacaga |
100 |
Q |
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| T |
34613264 |
ctttagccttacaaatgcaacaaacacactgccataggggatgataatgctccacttcttcccaaaaactcttcaattgagtataataatcaataacaga |
34613165 |
T |
|
| Q |
101 |
agtattaccttgacgtaaagaggaaatactatcatgtaatcgttctggcggttcattcagaacatcaacaacattatcaagaaataccgcgttttgagcg |
200 |
Q |
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| T |
34613164 |
agtattaccttgacgtaaagaggaaatactatcatgtaatcgttctggcggttcattcagaacatcaacaacattatcaagaaataccgcgttttgagcg |
34613065 |
T |
|
| Q |
201 |
aaatgtagagaagccgaagaaatgagccatgattgaatcatattgttgaagcattcccacgcctcgtagttgagatctcgagaagttaaaacaacgatct |
300 |
Q |
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| T |
34613064 |
aaatgtggagaagccgaagaaatgagccatgattgaatcatattgttgaagcattcccacacctcgtagttgagatctcgagaagttaaaacagcgatct |
34612965 |
T |
|
| Q |
301 |
accatcaacaaattggtatttgttcatgag---gaacaaagcccgtttcatagaacgggtccaaacattataattggaaccggtgtgaagttgcaaaatt |
397 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34612964 |
accatcaacaaattggtatttgttcatgaggaagaacaaagcccgtttcatagaacgggtccaaacattataattggaaccggtgtgaagttgcaaaatt |
34612865 |
T |
|
| Q |
398 |
atcactgaagtgggactctcactcggacgaatatagaaaggattggcttgaatctcagaaatctgagttgctgccaacgcggcggaagcatcactgcagc |
497 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
34612864 |
atcactgaagtgggactctcacttggacgaatatagaaaggattggcctgaatctcagaaatctgagttgctgtcaacacggcggaagcatcactgcagc |
34612765 |
T |
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| Q |
498 |
caccggagccattagctcgaaccatttgtgatgtgcagcagaactcttaaaaagagttctaattctgttcatagaagagctcttat |
583 |
Q |
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| T |
34612764 |
caccggagccattagctcgaaccatttgtgatgtgcagcagaactattaaaaagagttctaattctgttcatagaagagctcttat |
34612679 |
T |
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