View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8940_low_15 (Length: 602)

Name: NF8940_low_15
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8940_low_15
NF8940_low_15
[»] chr5 (7 HSPs)
chr5 (13-583)||(29688277-29688847)
chr5 (33-565)||(29711799-29712339)
chr5 (13-564)||(29696400-29696960)
chr5 (21-143)||(9120354-9120479)
chr5 (343-384)||(179405-179446)
chr5 (474-563)||(42562131-42562220)
chr5 (326-381)||(9120113-9120168)
[»] chr4 (30 HSPs)
chr4 (238-375)||(48853037-48853174)
chr4 (278-384)||(45365828-45365934)
chr4 (238-372)||(49043736-49043870)
chr4 (279-384)||(7790427-7790532)
chr4 (247-384)||(7771742-7771879)
chr4 (291-371)||(49038499-49038579)
chr4 (475-563)||(49043994-49044082)
chr4 (302-373)||(45384524-45384595)
chr4 (290-381)||(48899090-48899181)
chr4 (247-381)||(7773402-7773536)
chr4 (307-384)||(7878730-7878807)
chr4 (294-375)||(48870916-48870997)
chr4 (294-375)||(48876220-48876301)
chr4 (294-375)||(48886602-48886683)
chr4 (316-372)||(48147359-48147415)
chr4 (27-152)||(48871142-48871267)
chr4 (27-152)||(48876446-48876571)
chr4 (27-152)||(48886828-48886953)
chr4 (309-375)||(45371713-45371779)
chr4 (309-371)||(48864395-48864457)
chr4 (116-218)||(50666822-50666924)
chr4 (279-384)||(7908649-7908754)
chr4 (487-555)||(49048392-49048460)
chr4 (21-77)||(50673467-50673523)
chr4 (325-370)||(47208238-47208283)
chr4 (463-563)||(48852852-48852955)
chr4 (309-381)||(7765992-7766064)
chr4 (309-381)||(7786814-7786886)
chr4 (306-370)||(7813838-7813902)
chr4 (13-77)||(37826333-37826397)
[»] chr8 (4 HSPs)
chr8 (13-160)||(15349463-15349609)
chr8 (316-384)||(12195671-12195739)
chr8 (316-384)||(12440099-12440167)
chr8 (309-370)||(15349244-15349305)
[»] chr3 (6 HSPs)
chr3 (113-382)||(47451340-47451612)
chr3 (113-157)||(11014934-11014978)
chr3 (466-524)||(11005718-11005776)
chr3 (316-370)||(11024149-11024203)
chr3 (327-379)||(11015148-11015200)
chr3 (487-563)||(47451717-47451793)
[»] chr6 (1 HSPs)
chr6 (238-372)||(21016180-21016314)
[»] chr7 (1 HSPs)
chr7 (181-218)||(30124825-30124862)


Alignment Details
Target: chr5 (Bit Score: 559; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 13 - 583
Target Start/End: Complemental strand, 29688847 - 29688277
Alignment:
Q  13 ataatactatataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattcttgtctgcgtcatcttcttaagcctgatcactgtcac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29688847 ataatactatataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattcttgtctgcgtcatcttcttaagcctgatcactgtcac 29688748  T
Q  113 caccaggaagtgaaagcagagattctgtatacataaccactagggatccatattcatggtccgagtatgagtgatgctctagcagctgtcctttatcatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29688747 caccaggaagtgaaagcagagattctgtatacataaccactagggatccatattcatggtccgagtaggagtgatgctctagcagctgtcctttatcatt 29688648  T
Q  213 atacttggccaatacattatcgtcggttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaaga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29688647 atacttggccaatacattatcgtcggttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaaga 29688548  T
Q  313 acgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatcagtgcacatatcaaatagactgagacatc 412  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29688547 acgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaactgtaccattatcagtgcacatatcaaatagactgagacatc 29688448  T
Q  413 ctctgaatagccataaatcatacactctaggaccattatttataccaataggcaaaggcaactctataagtttcctttccgttaaatgaaatccaacaat 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29688447 ctctgaatagccataaatcatacactctaggaccattatttataccaataggcaaaggcaactctataagtttcctttccgttaaatgaaatccaacaat 29688348  T
Q  513 aacattcattgatctatcataatgacaagccaaccagtgaataaccccatttaggagtgaatctactctag 583  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29688347 aacattcattgatctatcataatgaaaagccaaccagtgaataaccccatttaggagtgaatctactctag 29688277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 33 - 565
Target Start/End: Original strand, 29711799 - 29712339
Alignment:
Q  33 agatcatgaaaatggtgaaggggaatacttgaaaacctcattcttgtc-tgcgt--catcttcttaagcctgatcactgtcaccaccaggaagtgaaagc 129  Q
    |||||| |||||||||||||| |||||||| || ||||| ||||| |  | |||  |||||||||| || ||| ||||||||||| |||||| |||||||    
T  29711799 agatcacgaaaatggtgaaggagaatacttcaagacctcgttcttcttattcgtttcatcttctta-gcttgaccactgtcaccatcaggaattgaaagc 29711897  T
Q  130 agagattctgtatacataaccactagggatccatattcatggtccgagtatgagtgatgctctagcagctgtcctttatcattatacttggccaatacat 229  Q
    |||||||||||||||||||||||||||||||||||||||| |||  |||| || |||||||||||||| |||||||| ||||||||||||||||||||||    
T  29711898 agagattctgtatacataaccactagggatccatattcattgtcacagtaggactgatgctctagcagttgtcctttctcattatacttggccaatacat 29711997  T
Q  230 t---atcgtcggttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgt 326  Q
    |   | | |  |||||||||||||||||||||||||||   |||||||||||||| || ||  |||||||  || ||||||| | ||| |||||||| ||    
T  29711998 taccagcatttgttccaacgatatcaccactttttgtatcgtatttcggacaaaaataatggctgggaattccatcaaaagacaaaacaagagtcttagt 29712097  T
Q  327 ccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatca-gtgcacatatcaaatagactgagacatcctctgaatagcca 425  Q
    |||||| |||   ||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||  ||||||||||||||||||| |||| |||    
T  29712098 ccaagaagatgtcacattgtatttttccatcacccatatttcaactgtaccattatcatgtgc-catatcccatagactgagacatcctctaaataccca 29712196  T
Q  426 taaatcatacact---ctaggaccattatttataccaataggcaaaggcaactctataagtttcctttccgttaaatgaaatccaacaataacattcatt 522  Q
    |||||||||||||   |||||| ||    ||||| ||   ||||||| |||||||| ||| | ||||| | |||||||| | |||| |||||||||| ||    
T  29712197 taaatcatacactttactaggagcagatgttatatcagctggcaaagtcaactctagaagctccctttgcattaaatgatagccaagaataacattcgtt 29712296  T
Q  523 gatctatcataatgacaagccaaccagtgaataaccccattta 565  Q
    ||| ||||||||  |  |||||||||||||||| |||||||||    
T  29712297 gatatatcataacaaagagccaaccagtgaatagccccattta 29712339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 13 - 564
Target Start/End: Complemental strand, 29696960 - 29696400
Alignment:
Q  13 ataatactatataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattcttgtctgc---gtcatcttcttaagcctgatcactgt 109  Q
    ||||||| ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||| |  |    ||||||||||||| | ||| ||||||    
T  29696960 ataatacaatataattataaagatcatgaaaatggtgaagaagaatacttcaaaacctcattcttcttggttctgtcatcttcttaaacttgaccactgt 29696861  T
Q  110 caccaccaggaagtgaaagcagagattctgtatacataaccactagggatccatattcatggtccgagtatgagtgatgctctagcagctgtcctttatc 209  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||| |  |||  |||| |||||||| ||| ||||||||||||| ||    
T  29696860 caccaccaggaattgaaagcagagattctgtatacataaccactggggatacatattgactgtcacagtaggagtgatgttcttgcagctgtcctttgtc 29696761  T
Q  210 attatacttggccaatacatta---tcgtcggttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaa 306  Q
    |||||||||||||||| ||  |     ||   |||||||||||||||||||||||||| | |||||||| |||||| |||||   ||| || || |||||    
T  29696760 attatacttggccaatgcacaacgcatgtttcttccaacgatatcaccactttttgtatagtatttcggccaaaaggagtgagcaggattgccatcaaaa 29696661  T
Q  307 gaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatcagtgcacatatcaaatagactga 406  Q
    || || || |||||||| |||||||| ||||| ||||||||||||| |||||||||||||| || |||| |  ||||||   | ||||   |||||  ||    
T  29696660 gacaggacaagagtcttagtccaagaggattgcacattgtatttttccatcacccatatttgaaatgtaactctatcaggcaaaatatgccatagagcga 29696561  T
Q  407 gacatcctctgaatagccataaatcatacac---tctaggaccattatttataccaataggcaaaggcaactctataagtttcctttccgttaaatgaaa 503  Q
    ||||||||||  | | ||||||||||||| |    |||||||||||  ||||  || | |||||| ||||||||| ||||||||||||  ||||||||||    
T  29696560 gacatcctctatacacccataaatcatacgccctgctaggaccattgattatctcatttggcaaacgcaactctagaagtttcctttcaattaaatgaaa 29696461  T
Q  504 tccaacaataacattcattgatctatcataatgacaagccaaccagtgaataaccccattt 564  Q
      |||||||||||  ||||||| |||||| | || ||||||||||||||||| ||||||||    
T  29696460 ggcaacaataacaggcattgatatatcattacgaaaagccaaccagtgaatagccccattt 29696400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 9120479 - 9120354
Alignment:
Q  21 atataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcat------tcttgtctgcgtcatcttcttaagcctgatcactgtcacca 114  Q
    |||||| |||||| |||| |||||||||||||| ||||| || ||||||||||      |||||| || ||||||| ||||||| || ||| |||   ||    
T  9120479 atataactataaaaatcaagaaaatggtgaaggagaatatttcaaaacctcattcttcttcttgtttgtgtcatctccttaagcttgttcattgt---ca 9120383  T
Q  115 ccaggaagtgaaagcagagattctgtata 143  Q
    ||||| |||||||||||||| ||||||||    
T  9120382 ccagggagtgaaagcagagactctgtata 9120354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 343 - 384
Target Start/End: Complemental strand, 179446 - 179405
Alignment:
Q  343 ttgtattttttcatcacccatatttcaactgtaccattatca 384  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  179446 ttgtattctttcatcacccatatttcaactgtatcattatca 179405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 474 - 563
Target Start/End: Original strand, 42562131 - 42562220
Alignment:
Q  474 ctctataagtttcctttccgttaaatgaaatccaacaataacat--tcattgatctatcataatgacaagccaaccagtgaataaccccatt 563  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||  ||||  || |||||| | ||  |||||||||||||||| |||||||    
T  42562131 ctctagaagtttcctttccgttaaatgaaaggcaacaataacatggtcat--atatatcatgacgaagagccaaccagtgaatagccccatt 42562220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 381
Target Start/End: Complemental strand, 9120168 - 9120113
Alignment:
Q  326 tccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccatta 381  Q
    ||||||| || || || ||||||| ||||||||||||||||||||||||| |||||    
T  9120168 tccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcatta 9120113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 238 - 375
Target Start/End: Complemental strand, 48853174 - 48853037
Alignment:
Q  238 gttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgatt 337  Q
    |||||||  ||||||||||| ||||||||| || | ||  ||||||||||| ||||||||  || |||||||||||| |||||||| |||||||||||      
T  48853174 gttccaataatatcaccactctttgtacaacatattggggaaaagtagtgagtgggaatggaactaaaagaaagaacaagagtcttagtccaagacgaac 48853075  T
Q  338 gtacattgtattttttcatcacccatatttcaactgta 375  Q
    | || ||||||| |||||| ||||||||||||||||||    
T  48853074 gcactttgtattctttcatgacccatatttcaactgta 48853037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 278 - 384
Target Start/End: Original strand, 45365828 - 45365934
Alignment:
Q  278 aaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtacc 377  Q
    ||||||| ||| |||||||| || ||| || ||||||| |||||||||||||||||||  | || || |||| ||||||||||||||||||||||||| |    
T  45365828 aaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatc 45365927  T
Q  378 attatca 384  Q
    |||||||    
T  45365928 attatca 45365934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 238 - 372
Target Start/End: Original strand, 49043736 - 49043870
Alignment:
Q  238 gttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgatt 337  Q
    |||||||  ||||||||| ||||||||||| || | |||   ||||| ||| |||||||| || ||| ||||| ||| |||||||| ||||| ||||| |    
T  49043736 gttccaataatatcaccaatttttgtacaacatattggagcgaagtaatgagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaat 49043835  T
Q  338 gtacattgtattttttcatcacccatatttcaact 372  Q
    | || ||||||| ||||||||||||||||||||||    
T  49043836 gcactttgtattctttcatcacccatatttcaact 49043870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 279 - 384
Target Start/End: Complemental strand, 7790532 - 7790427
Alignment:
Q  279 aaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtacca 378  Q
    ||||||||||   |||||| || ||| ||||||||| ||||| || ||||||||||| || || ||||||| |||||||||||||||||||| |||| ||    
T  7790532 aaagtagtgatcaggaatggcatcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatca 7790433  T
Q  379 ttatca 384  Q
    ||||||    
T  7790432 ttatca 7790427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 384
Target Start/End: Complemental strand, 7771879 - 7771742
Alignment:
Q  247 atatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgt 346  Q
    ||||||||| |||||||| ||||| | ||   ||||||||||   |||||| || ||| ||||||||| ||||| || ||||| ||||| || || ||||    
T  7771879 atatcaccattttttgtagaatatataggttgaaagtagtgatcaggaatggcatcaacagaaagaacaagagttttagtccatgacgaatgcactttgt 7771780  T
Q  347 attttttcatcacccatatttcaactgtaccattatca 384  Q
    ||| |||||||||||||||| ||| |||| ||||||||    
T  7771779 attctttcatcacccatattacaattgtatcattatca 7771742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 49038499 - 49038579
Alignment:
Q  291 gggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaac 371  Q
    ||||||| ||| || ||| ||||| |||||||| ||||||||||| || || ||||||| |||||||||||||||||||||    
T  49038499 gggaatgccactaatagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 475 - 563
Target Start/End: Original strand, 49043994 - 49044082
Alignment:
Q  475 tctataagtttcctttccgttaaatgaaatccaacaataacattcattgatctatcataatgacaagccaaccagtgaataaccccatt 563  Q
    |||| ||||||||||||  |||||| |||  ||||||||||||||||||||  ||||  |||| ||||||||||||||||| |||||||    
T  49043994 tctaaaagtttcctttcaattaaatcaaaggcaacaataacattcattgataaatcaagatgaaaagccaaccagtgaatagccccatt 49044082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 373
Target Start/End: Original strand, 45384524 - 45384595
Alignment:
Q  302 caaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactg 373  Q
    |||||| ||||||  ||||||||||||||||||| || || || |||| |||||||||||||||||||||||    
T  45384524 caaaaggaagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaactg 45384595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 381
Target Start/End: Complemental strand, 48899181 - 48899090
Alignment:
Q  290 tgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccatta 381  Q
    |||||||| || ||| || |||||| ||||||  ||||||||| |||| ||| || |||| ||||||||||||||||||||||||| |||||    
T  48899181 tgggaatgccatcaataggaagaacaagagtcactgtccaagaggattttactttatattctttcatcacccatatttcaactgtatcatta 48899090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 247 - 381
Target Start/End: Original strand, 7773402 - 7773536
Alignment:
Q  247 atatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgt 346  Q
    ||||||||| |||||||| ||||| | ||   ||||||||||   |||||| |  ||| ||||||||| ||||  ||  |||||||||| || || ||||    
T  7773402 atatcaccattttttgtagaatatataggttgaaagtagtgatcaggaatggcttcaacagaaagaacaagagatttaatccaagacgaatgcactttgt 7773501  T
Q  347 attttttcatcacccatatttcaactgtaccatta 381  Q
    ||| ||||||||||||||||||||||||| |||||    
T  7773502 attctttcatcacccatatttcaactgtatcatta 7773536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 307 - 384
Target Start/End: Complemental strand, 7878807 - 7878730
Alignment:
Q  307 gaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatca 384  Q
    |||||||| ||||| ||  ||||||| || || || ||||||| ||||||||||||||||||||||||| ||||||||    
T  7878807 gaaagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattatca 7878730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 48870997 - 48870916
Alignment:
Q  294 aatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgta 375  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| |  || |||||||  ||||||||||| ||||||| ||||    
T  48870997 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgta 48870916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 48876301 - 48876220
Alignment:
Q  294 aatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgta 375  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| |  || |||||||  ||||||||||| ||||||| ||||    
T  48876301 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgta 48876220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 48886683 - 48886602
Alignment:
Q  294 aatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgta 375  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| |  || |||||||  ||||||||||| ||||||| ||||    
T  48886683 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgta 48886602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 48147359 - 48147415
Alignment:
Q  316 agagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaact 372  Q
    |||||||| ||||||||||| || || ||||||| ||||||||||||||||||||||    
T  48147359 agagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 48147415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 48871267 - 48871142
Alignment:
Q  27 ttataaagatcatgaaaatggtgaaggggaatacttgaaaacctcat---tcttgtctgcgtcatcttcttaagcctgatcactgtcaccaccaggaagt 123  Q
    ||||||| |||| |||||||||||||| ||||| || ||||||||||   |||||| || |||| |||||||| |||| ||| |||   ||||||| |||    
T  48871267 ttataaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgt---caccagggagt 48871171  T
Q  124 gaaagcagagattctgtatacataaccac 152  Q
    ||||||| ||| |||||||| ||| ||||    
T  48871170 gaaagcaaagactctgtatagatagccac 48871142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 48876571 - 48876446
Alignment:
Q  27 ttataaagatcatgaaaatggtgaaggggaatacttgaaaacctcat---tcttgtctgcgtcatcttcttaagcctgatcactgtcaccaccaggaagt 123  Q
    ||||||| |||| |||||||||||||| ||||| || ||||||||||   |||||| || |||| |||||||| |||| ||| |||   ||||||| |||    
T  48876571 ttataaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgt---caccagggagt 48876475  T
Q  124 gaaagcagagattctgtatacataaccac 152  Q
    ||||||| ||| |||||||| ||| ||||    
T  48876474 gaaagcaaagactctgtatagatagccac 48876446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 48886953 - 48886828
Alignment:
Q  27 ttataaagatcatgaaaatggtgaaggggaatacttgaaaacctcat---tcttgtctgcgtcatcttcttaagcctgatcactgtcaccaccaggaagt 123  Q
    ||||||| |||| |||||||||||||| ||||| || ||||||||||   |||||| || |||| |||||||| |||| ||| |||   ||||||| |||    
T  48886953 ttataaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgt---caccagggagt 48886857  T
Q  124 gaaagcagagattctgtatacataaccac 152  Q
    ||||||| ||| |||||||| ||| ||||    
T  48886856 gaaagcaaagactctgtatagatagccac 48886828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 45371713 - 45371779
Alignment:
Q  309 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgta 375  Q
    |||||| | |||||| ||||||||||| || || ||||||| |||||| ||||||||||||||||||    
T  45371713 aagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgta 45371779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 371
Target Start/End: Complemental strand, 48864457 - 48864395
Alignment:
Q  309 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaac 371  Q
    |||||| ||| |||| ||||||||||| || || ||||||| |||||||||||||||||||||    
T  48864457 aagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 50666924 - 50666822
Alignment:
Q  116 caggaagtgaaagcagagattctgtatacataaccactagggatccatattcatggtccgagtatgagtgatgctctagcagctgtcctttatcattata 215  Q
    ||||||||||||| ||||| ||||||||||| |||||| ||||||||| |  || ||| || || |||||||| |||| || ||| ||||||| ||| ||    
T  50666924 caggaagtgaaagtagagactctgtatacatgaccacttgggatccatctggatcgtcggaataagagtgatgatctaacaactgccctttataattgta 50666825  T
Q  216 ctt 218  Q
    |||    
T  50666824 ctt 50666822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 279 - 384
Target Start/End: Complemental strand, 7908754 - 7908649
Alignment:
Q  279 aaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtacca 378  Q
    ||||||||||   |||||| || ||| ||||||||| ||||| ||  ||||||| || || || ||||||| |||||||||||||||||||| |||| |     
T  7908754 aaagtagtgatcaggaatggcatcaacagaaagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaagtgtatct 7908655  T
Q  379 ttatca 384  Q
    ||||||    
T  7908654 ttatca 7908649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 555
Target Start/End: Original strand, 49048392 - 49048460
Alignment:
Q  487 ctttccgttaaatgaaatccaacaataacattcattgatctatcataatgacaagccaaccagtgaata 555  Q
    ||||||||||||| |||  |||||||||||||||| |||  ||||  |||| |||||||||||||||||    
T  49048392 ctttccgttaaatcaaaggcaacaataacattcatcgataaatcaagatgaaaagccaaccagtgaata 49048460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 50673523 - 50673467
Alignment:
Q  21 atataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattctt 77  Q
    ||||||||||||| |||| ||||||||||||||  |||| || ||||||||||||||    
T  50673523 atataattataaatatcaagaaaatggtgaaggaaaatattttaaaacctcattctt 50673467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 370
Target Start/End: Complemental strand, 47208283 - 47208238
Alignment:
Q  325 gtccaagacgattgtacattgtattttttcatcacccatatttcaa 370  Q
    |||||||| |||||||| ||||||| ||||||||||| ||||||||    
T  47208283 gtccaagatgattgtactttgtattctttcatcacccttatttcaa 47208238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 563
Target Start/End: Complemental strand, 48852955 - 48852852
Alignment:
Q  463 ggcaaaggcaactctataagtttcctttccgttaaatgaaatccaacaataac---attcattgatctatcataatgacaagccaaccagtgaataaccc 559  Q
    ||||||| |||||||| ||||||||||||| |||||| |||  | ||||||||   |||||||| |  ||||| | || |||||||||| |||||| |||    
T  48852955 ggcaaagacaactctaaaagtttcctttccattaaatcaaaggccacaataacattattcattggtaaatcatgacgaaaagccaaccaatgaatagccc 48852856  T
Q  560 catt 563  Q
    ||||    
T  48852855 catt 48852852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 381
Target Start/End: Complemental strand, 7766064 - 7765992
Alignment:
Q  309 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccatta 381  Q
    |||||| || ||||| ||||| ||||| |  || ||||||| |||||||||||||||||||| |||| |||||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcatta 7765992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 381
Target Start/End: Complemental strand, 7786886 - 7786814
Alignment:
Q  309 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccatta 381  Q
    |||||| ||||||||  |||||||  | || || ||||||| |||||||||||||||||||| |||| |||||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcatta 7786814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 7813902 - 7813838
Alignment:
Q  306 agaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaa 370  Q
    ||||||||| ||||| ||  |||||||||| || || ||||||| ||||| ||||||||||||||    
T  7813902 agaaagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 37826333 - 37826397
Alignment:
Q  13 ataatactatataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattctt 77  Q
    ||||||| ||||||||  ||| |||| |||||||||||||| ||||| ||  |||||||||||||    
T  37826333 ataatacaatataattgaaaatatcaagaaaatggtgaaggagaatattttgaaacctcattctt 37826397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 15349609 - 15349463
Alignment:
Q  13 ataatactatataatt--ataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattcttgtctgcgtcatcttcttaagcctgatcactgtc 110  Q
    ||||||| ||||||||  ||||| ||||  ||||||||||||| |||||  |||||||||||||||||| |||||| || ||||||||||| |||   |     
T  15349609 ataatacaatataattttataaatatcaataaaatggtgaaggagaataactgaaaacctcattcttgtttgcgtcgtcctcttaagcctgctca---tt 15349513  T
Q  111 accaccaggaagtgaaagcagagattctgtatacataaccactagggatc 160  Q
    | ||||||| |||||||||||||| |||||||||||| ||||| ||||||    
T  15349512 atcaccagggagtgaaagcagagactctgtatacatagccacttgggatc 15349463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 12195739 - 12195671
Alignment:
Q  316 agagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatca 384  Q
    |||||||| |||||||| ||||||   ||||||| ||||||| |||||||||||||||| | |||||||    
T  12195739 agagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgtccgattatca 12195671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 12440167 - 12440099
Alignment:
Q  316 agagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatca 384  Q
    |||||||| |||||||| ||||||   ||||||| ||||||| |||||||||||||||| | |||||||    
T  12440167 agagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgtccgattatca 12440099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 15349305 - 15349244
Alignment:
Q  309 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaa 370  Q
    |||||| ||| ||||||||||||| || |  || ||||||| ||||||||||||||||||||    
T  15349305 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 113 - 382
Target Start/End: Original strand, 47451340 - 47451612
Alignment:
Q  113 caccaggaagtgaaagcagagattctgtatacataaccactagggatccatattcatggtccgagtatgagtgatgctctagcagctgtcctttatcatt 212  Q
    |||| ||||||||||||||||| ||||| |||||||||||| || ||||| ||  || ||   | || ||  ||||||||| || ||||||||| |||||    
T  47451340 caccgggaagtgaaagcagagactctgtgtacataaccacttggcatccacatggatcgttacaataggaacgatgctctaacaactgtcctttgtcatt 47451439  T
Q  213 atacttggccaatac---attatcgtcggttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaa 309  Q
    ||||||  ||||| |   || ||| || |||||||  |||||||||||||||||| |   |   ||  ||||||| |||  ||||||| || ||| || |    
T  47451440 atacttaaccaatccggtatcatcatctgttccaataatatcaccactttttgtagaggttaaggggtaaaagtactgagagggaatgccatcaatagga 47451539  T
Q  310 agaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattat 382  Q
    ||||| |||||||||  ||||||||| |  || ||||||| |||||||||||||||||||||| || ||||||    
T  47451540 agaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattat 47451612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 11014934 - 11014978
Alignment:
Q  113 caccaggaagtgaaagcagagattctgtatacataaccactaggg 157  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||    
T  11014934 caccagggagtgaaagcagagactctgtgtacataaccactaggg 11014978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 524
Target Start/End: Original strand, 11005718 - 11005776
Alignment:
Q  466 aaaggcaactctataagtttcctttccgttaaatgaaatccaacaataacattcattga 524  Q
    ||||||| ||||| |||||||||||||  ||||| ||| ||||||||||||| ||||||    
T  11005718 aaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattga 11005776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 370
Target Start/End: Original strand, 11024149 - 11024203
Alignment:
Q  316 agagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaa 370  Q
    |||||||| ||||||||||| || || ||||||| |||||| |||||||||||||    
T  11024149 agagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 11015148 - 11015200
Alignment:
Q  327 ccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccat 379  Q
    ||||||||| || || ||||||| |||||| ||||||||||||||||| ||||    
T  11015148 ccaagacgaatgcactttgtattctttcataacccatatttcaactgttccat 11015200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 563
Target Start/End: Original strand, 47451717 - 47451793
Alignment:
Q  487 ctttccgttaaatgaaatccaacaataacattcattgatctatcataatgacaagccaaccagtgaataaccccatt 563  Q
    |||||| |||||| |||| || ||||||||||||| ||| |||||| | || |||||||||| | |||| |||||||    
T  47451717 ctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccatt 47451793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 238 - 372
Target Start/End: Complemental strand, 21016314 - 21016180
Alignment:
Q  238 gttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgatt 337  Q
    |||||||  ||||||||||||||||||||| || | ||| | || ||  || ||||||||||| ||| ||| | |   |||||||| ||||||||||| |    
T  21016314 gttccaataatatcaccactttttgtacaacatattggagagaaataacgagtgggaatgtcatcaatagagaaagtaagagtcttagtccaagacgaat 21016215  T
Q  338 gtacattgtattttttcatcacccatatttcaact 372  Q
    |||| ||||||| |||||| |||||||||||||||    
T  21016214 gtactttgtattctttcataacccatatttcaact 21016180  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 30124825 - 30124862
Alignment:
Q  181 gagtgatgctctagcagctgtcctttatcattatactt 218  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  30124825 gagtgatgctctagcagctgtcctttgtcattaaactt 30124862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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