View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_low_16 (Length: 583)
Name: NF8940_low_16
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 14 - 583
Target Start/End: Original strand, 25702086 - 25702660
Alignment:
| Q |
14 |
cagagagagataaggttagtaaaaaatttattttatccataaattcttgctctttttgtttaggaaacgcattttgtcataggtggaagggcatttcggt |
113 |
Q |
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| T |
25702086 |
cagagagagataaggttagtaaaaaatttattttatccataaattcttgctctttttgtttaggaaacgcattttgtcataggcggaagggcatttcggt |
25702185 |
T |
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| Q |
114 |
gtgtaacaactttttgtcgccgttgttttgtt------gttaaaacggaaacgaattaaaaccaattttgcagctattttgacgttaacataatgttttt |
207 |
Q |
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| T |
25702186 |
gtgtaacaactttttgtcgccgttgttttgtttactctgttaaaacggaaacaaattataaccaattttgcagctattttgacgttaacataatgttttt |
25702285 |
T |
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| Q |
208 |
tagaactttgacttggagttggaagacgttttatgtggaatcccaagtctccacacttcctcgtgtgtgtttatttgagtatgtgtcaataggccaatga |
307 |
Q |
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| T |
25702286 |
-agaactttgacttggagttggaagacgttttatgtggaatcccaagtctccacacttcctcgtgtgtgtttatttgagtatgtgtcaataggccaatga |
25702384 |
T |
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| Q |
308 |
agcnnnnnnnnncttatgatacgtgaaacacctacatatatacaaacacaatcatggacacacgttaacacatcgatatcaataaaaatatgagaaaata |
407 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25702385 |
agcaaaaaaaaacttatgatacgtgaaacacctacatatatacaaacacaatcatggacacacgttaacaaatcgatatcaataaaaatatgagaaaata |
25702484 |
T |
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| Q |
408 |
aattaagggaacggaatcacatttttcatgtccggacaagctttctatcagaaccgtgtcagtattacatagtttgtaatactttatggaattggattct |
507 |
Q |
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| T |
25702485 |
aattaagggaacggaatcacatttttcatgtccggacaagctttctatcagaaccgtgtcagtattacatagtttgtaatactttatggaattggattct |
25702584 |
T |
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| Q |
508 |
ggtctagacagttaaagacaaacnnnnnnnctaacatcattttttgctgaaatgataatactaataagagaggatt |
583 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25702585 |
ggtctagacagttaaagacaaacaaaaaaaattacatcattttttgctgaaatgagaatactaataagagaggatt |
25702660 |
T |
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