View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_low_18 (Length: 573)
Name: NF8940_low_18
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 3304673 - 3305207
Alignment:
| Q |
1 |
gtttatcctcgatgttagataacttgatccaaaactaatcgtaccaatacataatttcgtgtttcactttccattagtagataatgaataaaagcatata |
100 |
Q |
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| T |
3304673 |
gtttatcctcgatgttaggtaacttgatccaaaactaatcgtaccaatacataatttcgtgtttcactttccattagtagataatgaataaaagcatata |
3304772 |
T |
|
| Q |
101 |
tgtgttgtattgtgcaatcatcagatgatacatacttaataatcgttgttttgttggagatcaactttttctaattataacttctagcataaggtaagaa |
200 |
Q |
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| T |
3304773 |
tatgttgtattgtgcaatcatcagatgatacatacttaataatcgttgttttgttggagatcaactttttctaattataacttctagcataaggtaagaa |
3304872 |
T |
|
| Q |
201 |
ctaaactagtacttaatagttgttaaagtgaacattacaagtgataacattttcagcgaagaaagctcgtcgccgaaggcaaaaagcaccaatttttgca |
300 |
Q |
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| T |
3304873 |
ctaaactagtacttaatagttgttaaagtgaacattacaagtgataacattttcagcgaagaaagctcatcg-cgaaggcaaaaagcaccaatttttgca |
3304971 |
T |
|
| Q |
301 |
actataccaccatgcagtaattatgaagacaaactgaacacaaatacttttgaagatcaaaacccagtataaagcttcttatcaagatggaaaaacgtta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3304972 |
actataccaccatgcagtaattatgaagacaaactgaatacaaatacatttgaagatcaaaacccagtataaagcttcttatcaagatggaaaaatgtta |
3305071 |
T |
|
| Q |
401 |
taactaatctatttgttgaagttaattacttctaaacaacataac-nnnnnnnatacagtttaatagtggatacctcagattttagtcaatatagcatca |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3305072 |
taactaatctatttgttgaagttaattacttctaaacaacataacttttttttatacagtttaatagtggatacctcagattttagtcaatattgcatca |
3305171 |
T |
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| Q |
500 |
atcaacatcaccaagtgggaacattgaagttatttt |
535 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3305172 |
atcaacatcaccaagtgggaacattgaagttatttt |
3305207 |
T |
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