View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8940_low_20 (Length: 534)

Name: NF8940_low_20
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8940_low_20
NF8940_low_20
[»] chr7 (9 HSPs)
chr7 (1-534)||(46489642-46490195)
chr7 (402-534)||(46494361-46494493)
chr7 (402-533)||(46478861-46478992)
chr7 (388-497)||(46516636-46516745)
chr7 (402-534)||(46323070-46323202)
chr7 (402-534)||(46326775-46326907)
chr7 (403-534)||(46520292-46520423)
chr7 (402-534)||(46531910-46532042)
chr7 (489-534)||(46524444-46524489)
[»] chr3 (1 HSPs)
chr3 (420-534)||(7475529-7475643)


Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 46489642 - 46490195
Alignment:
Q  1 catttatttatcaagttcaacacctaaagtttggattaaactcataccaaatgaatttaggatttaattttacgtactgtgtataaaaaagagatacaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46489642 catttatttatcaagttcaacacctaaagtttggattaaactcataccaaatgaatttaggatttaattttacgtactgtgtataaaaaagagatacaca 46489741  T
Q  101 taactttgttatatatcaattcttaaaatagtttaacaaatattaatgtatactaattgaaca----------------gaatctaagtcaaaagacatt 184  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||                 |||||||||||||||||||||    
T  46489742 taactttgttatatatcaattcttaaaatagtataacaaatattaatgtatactaattgaactcatatatatattctctgaatctaagtcaaaagacatt 46489841  T
Q  185 ttaagnnnnnnnnnnn----ggacagaatacactttaaagttcaaatatcaaaagataaagttggtaaatagtttttgnnnnnnntaataactaacatta 280  Q
    |||||               |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  46489842 ttaagtttttttttttttttggacagaatacactttaatgttcaaatatcaaaagataaagttggtaaatagtttttgaaaaaaataataactaacatta 46489941  T
Q  281 aaacacaacggcaattcccctgttctaccacaacacacaaattaaaatctagcgttcagtttacaaacacagattcaaaaatagacaaagtttgttaatt 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46489942 aaacacaacggcaattcccctgttctaccacaacacacaaattaaaatctagcgttcagtttacaaacacagattcaaaaatagacaaagtttgttaatt 46490041  T
Q  381 aaaaacgaaaatacaaatacaaacctggaatctgcagatataataatcatcaccataaacagctcgcatgccatcaacaggtttcaattttgggtttctg 480  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46490042 aaaaatgaaaatataaatacaaacctggaatctgcagatataataatcatcaccatacacagctcgcatgccatcaacaggtttcaattttgggtttctg 46490141  T
Q  481 ggtaaatatggaacactcagacacacgtaggctttgattctttcagggcgaaac 534  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46490142 ggtaaatacggaacactcagacacacgtaggctttgattctttcagggcgaaac 46490195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 402 - 534
Target Start/End: Original strand, 46494361 - 46494493
Alignment:
Q  402 aacctggaatctgcagatataataatcatcaccataaacagctcgcatgccatcaacaggtttcaattttgggtttctgggtaaatatggaacactcaga 501  Q
    |||||||||||||||||||||||| ||||| ||| | | |||||||||||||||||| ||||||| ||| ||||||||||||||||| || ||||| |||    
T  46494361 aacctggaatctgcagatataatagtcatctccaaataaagctcgcatgccatcaactggtttcactttggggtttctgggtaaatacggcacactgaga 46494460  T
Q  502 cacacgtaggctttgattctttcagggcgaaac 534  Q
    ||||| |||||||| | ||| ||||||||||||    
T  46494461 cacacataggctttaactctctcagggcgaaac 46494493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 402 - 533
Target Start/End: Original strand, 46478861 - 46478992
Alignment:
Q  402 aacctggaatctgcagatataataatcatcaccataaacagctcgcatgccatcaacaggtttcaattttgggtttctgggtaaatatggaacactcaga 501  Q
    ||||||||||||||||||||| |||||||| ||| | | |||||||||||||||||| ||||||| ||| ||||||||||||||||| || ||||||| |    
T  46478861 aacctggaatctgcagatatagtaatcatctccaaacaaagctcgcatgccatcaactggtttcattttggggtttctgggtaaatacggcacactcaaa 46478960  T
Q  502 cacacgtaggctttgattctttcagggcgaaa 533  Q
    || || || ||||||||| |||||||||||||    
T  46478961 caaacataagctttgattttttcagggcgaaa 46478992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 388 - 497
Target Start/End: Original strand, 46516636 - 46516745
Alignment:
Q  388 aaaatacaaatacaaacctggaatctgcagatataataatcatcaccataaacagctcgcatgccatcaacaggtttcaattttgggtttctgggtaaat 487  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||| | | |||| ||||||||||||||||||| | ||| |||||||| |||||      
T  46516636 aaaatacaaaaacaaacctggaatctgcagatataataatcgtcaccaaacaaagcttgcatgccatcaacaggttttactttggggtttcttggtaaca 46516735  T
Q  488 atggaacact 497  Q
    ||||||||||    
T  46516736 atggaacact 46516745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 402 - 534
Target Start/End: Complemental strand, 46323202 - 46323070
Alignment:
Q  402 aacctggaatctgcagatataataatcatcaccataaacagctcgcatgccatcaacaggtttcaattttgggtttctgggtaaatatggaacactcaga 501  Q
    |||||| |||||  |||||||||||||||| |||||| |||| |||||||||||||||| | | | ||| ||||||||  |   | |||||||||| |||    
T  46323202 aacctgaaatctagagatataataatcatctccataagcagcacgcatgccatcaacagttctgattttagggtttctacgcgtaaatggaacactgaga 46323103  T
Q  502 cacacgtaggctttgattctttcagggcgaaac 534  Q
    || || |||||||||||||||||||||||||||    
T  46323102 caaacataggctttgattctttcagggcgaaac 46323070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 402 - 534
Target Start/End: Complemental strand, 46326907 - 46326775
Alignment:
Q  402 aacctggaatctgcagatataataatcatcaccataaacagctcgcatgccatcaacaggtttcaattttgggtttctgggtaaatatggaacactcaga 501  Q
    |||||| ||||| ||||||||||||||||| |||||||| || |||||||||||||| | | | | ||| |||||||   | | | |||||||||| ||     
T  46326907 aacctgaaatctacagatataataatcatctccataaaccgcacgcatgccatcaacggttctgattttagggtttcgatggagaaatggaacactgagg 46326808  T
Q  502 cacacgtaggctttgattctttcagggcgaaac 534  Q
    ||||| |||||||||||||||||||||||||||    
T  46326807 cacacataggctttgattctttcagggcgaaac 46326775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 403 - 534
Target Start/End: Original strand, 46520292 - 46520423
Alignment:
Q  403 acctggaatctgcagatataataatcatcaccataaacagctcgcatgccatcaacaggtttcaattttgggtttctg-ggtaaatatggaacactcaga 501  Q
    ||||| |||||||||||||||||||| || |||||| |||| ||| | ||||||| ||| |||| | | ||||||||  ||| || |||||||||| |||    
T  46520292 acctgaaatctgcagatataataatcgtctccataagcagcacgcctaccatcaataggcttcactgtggggtttctatggttaa-atggaacactaaga 46520390  T
Q  502 cacacgtaggctttgattctttcagggcgaaac 534  Q
    || || |||||||||||||||||||||||||||    
T  46520391 caaacataggctttgattctttcagggcgaaac 46520423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 534
Target Start/End: Original strand, 46531910 - 46532042
Alignment:
Q  402 aacctggaatctgcagatataataatcatcaccataaacagctcgcatgccatcaacaggtttcaattttgggtttctgggtaaatatggaacactcaga 501  Q
    |||||| |||||  |||||||||||||||| |||||| |||| |||||| ||||||| |  || | ||| ||||||||  | |    ||||||||| |||    
T  46531910 aacctgaaatctagagatataataatcatctccataagcagcacgcatggcatcaacggtcttgattttggggtttctacggagtagtggaacactgaga 46532009  T
Q  502 cacacgtaggctttgattctttcagggcgaaac 534  Q
    || || || ||||||||||||||||||||||||    
T  46532010 cagacataagctttgattctttcagggcgaaac 46532042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 534
Target Start/End: Original strand, 46524444 - 46524489
Alignment:
Q  489 tggaacactcagacacacgtaggctttgattctttcagggcgaaac 534  Q
    ||||||||| ||||| || || ||||||||||||||||||||||||    
T  46524444 tggaacactgagacagacataagctttgattctttcagggcgaaac 46524489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 534
Target Start/End: Complemental strand, 7475643 - 7475529
Alignment:
Q  420 ataataatcatcaccataaacagctcgcatgccatcaacaggtttcaattttgggtttctg-ggtaaatatggaacactcagacacacgtaggctttgat 518  Q
    |||||||||||| |||||| ||||  ||||||||||||| |  |||| ||| ||||||||  |||  | | |||||||| ||||| || |||||||||||    
T  7475643 ataataatcatctccataagcagcatgcatgccatcaactgtcttcagtttagggtttcttcggtgca-agggaacactgagacaaacataggctttgat 7475545  T
Q  519 tctttcagggcgaaac 534  Q
    ||||||||||||||||    
T  7475544 tctttcagggcgaaac 7475529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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