View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8940_low_21 (Length: 520)
Name: NF8940_low_21
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 15 - 445
Target Start/End: Original strand, 25702641 - 25703073
Alignment:
| Q |
15 |
aatactaataagagaggattcagaataatatcactgacagaaagtatggatagttctatttgaagaaaatttgctataattagatgctttggaccaatgt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
25702641 |
aatactaataagagaggattcagaataatatcactgacagaaagtatggatagttctatttgtagaaaatttgctataactaggtgctttggaccaatgt |
25702740 |
T |
|
| Q |
115 |
cgtggatggttgattgcagaatatgatagaaggctaaaaatctgccatattaattataaaaacgctactgcggactatggcaccgccacgacggacatcc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| |||||| ||||| || ||||||| |
|
|
| T |
25702741 |
tgtggatggttgattgcagaatatgatagaaggctaaaaatctgccatattatttataaaaacactattgcggacaatggcaacgccatgatagacatcc |
25702840 |
T |
|
| Q |
215 |
cttcacaaattacattatcttgtttgtccaaaaaatctgccatggagtcgcaatggccgccatttaacgagattgattagaatatctgtacagaagatta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25702841 |
cttcacaaattacattatcttgtttgtccaaaaaatctgccatggagtcgcaatggccgccatttaacgagattgattagaatatctgtacagaagatta |
25702940 |
T |
|
| Q |
315 |
acactagagggaggcctagaaaacgat--aacaattcgacctcgtttgatttatgtatgtagtttatcccacctagtgggaaaagcttttggtggaactg |
412 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
25702941 |
acactagagggaggcctagaaaacgataaaacaatttgacctcatttgatttatgcatgtagtttatcccacctagtaggaaaagcttctggtgtaactg |
25703040 |
T |
|
| Q |
413 |
tttgttgctgtatggatcgtgcattttgtttta |
445 |
Q |
| |
|
||||||| |||| ||||| |||||||| ||||| |
|
|
| T |
25703041 |
tttgttgttgtaaggatcatgcattttctttta |
25703073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University