View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_low_23 (Length: 511)
Name: NF8940_low_23
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 160289 - 159797
Alignment:
| Q |
1 |
catagaagaaatggaaataccnnnnnnngtgttgttgcattggttgaagttcttcatttccaaggtgaattggaccaattgagattagttgaggagtgta |
100 |
Q |
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| T |
160289 |
catagaagaaatggaaatacctttttttgtgttgttgcattggttgaagttcttcatttccaaggtgaattggaccaattgagattagttgaggagtgta |
160190 |
T |
|
| Q |
101 |
agcttcttgtttcacttttcggagattgtgaggaaccttgtagatgctacaatctgctaaacttaactcttctagaacttcaatgtcaatgatgtttttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
160189 |
agcttcttgtttcacttttcggagattgtgaggaaccttgtagatgctacaatctgctaaacttaactcttctagaacttcaatgtcaatgatgtttttc |
160090 |
T |
|
| Q |
201 |
accatttcatattcagtttcagataaagcagcagcagaagtattagcaggtgccatgatattatttttccctgtgacatgtgaggatcattttgagcaac |
300 |
Q |
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| T |
160089 |
accatttcatattcagtttcagataaagcagcagcagaagtattagcaggtgccatgatattatttttccctgtgacatgtgaggatcattttgagcaac |
159990 |
T |
|
| Q |
301 |
cagaacacttttatacttgtatcatatcaatatagatggttatttgtgtagtgtatgtaccaattgattacattttagttaggggtgtacactagttgag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
159989 |
cagaacacttttatacttgtatcatatcaatatagatggttatttgtgtagtgtatgtaccaattgattacattttagttaggggtgtacactagttgag |
159890 |
T |
|
| Q |
401 |
tcgaacgaactcatttatcttaggaacctaagtcgatgacaccttttcccactaaacgcaattaattttacgagcatcttcactcttctactt |
493 |
Q |
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| T |
159889 |
tcgaccgaactcatttatcttaggaacctaagtcgatgacaccttttcccacttaacgcaatgaattttaggagcatcttcactcttctactt |
159797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 151854 - 151370
Alignment:
| Q |
1 |
catagaagaaatggaaataccnnnnnnngtgttgttgcattggttgaagttcttcatttccaaggtgaattggaccaattgagattagttgaggagtgta |
100 |
Q |
| |
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||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
151854 |
catagaagaaaaggaaatacctttttttgtgttcttgcattggttgaagttcttcatttccaaggtgaattggaccaattgagattaattcaggagtgta |
151755 |
T |
|
| Q |
101 |
agcttcttgtttcacttttcggagattgtgaggaaccttgtagatgctacaatctgctaaacttaactcttctagaacttcaatgtcaatgatgtttttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||| | |||| |
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| T |
151754 |
agcttcttgtttcacttttcggagattgtgaggaaccttgtagatgctacattctgctaaacttaacttttctaggactccaatgtcaatgatttgtttc |
151655 |
T |
|
| Q |
201 |
accatttcatattcagtttcagataaagcagcagcagaagtattagcaggtgccatgatattatttttccctgtgacatgtgaggatcattttgagcaac |
300 |
Q |
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| T |
151654 |
accatttcatattcagtttcagataaaccagcagcagaagtattagcatgtgccataatattatttttccctgtgacatgtgaggatcattttgagcaac |
151555 |
T |
|
| Q |
301 |
cagaacacttttatacttgtatcatatcaa--tatagatggttatttgtgtagtgtatgtaccaattgattacattttagttaggggtgtacactagttg |
398 |
Q |
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||||| ||||| |||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||| |||||||||||||||||||||||| | |
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| T |
151554 |
cagaaaactttaatacttgtatcatatcaatatatagatggttatttgtagtgtatatgtaccgattgattacgttttagttaggggtgtacactagtcg |
151455 |
T |
|
| Q |
399 |
agtcgaacgaactcatttatcttaggaacctaagtcgatgacaccttttcccactaaacgcaattaattttacgagcatcttcact |
484 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||| |||||| |||| |||||||| ||||||||||| ||||||||| |
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| T |
151454 |
agtcgtccgaactcatttatcttaggaacccaagtcgatgactcctttt-tcacttaacgcaatgaattttacgagtatcttcact |
151370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 426
Target Start/End: Complemental strand, 159798 - 159751
Alignment:
| Q |
379 |
ttaggggtgtacactagttgagtcgaacgaactcatttatcttaggaa |
426 |
Q |
| |
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|||||||||||||| |||||||||| |||||||||||||||| |||| |
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| T |
159798 |
ttaggggtgtacacatgttgagtcgaccgaactcatttatcttgggaa |
159751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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