View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_low_27 (Length: 483)
Name: NF8940_low_27
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 115 - 467
Target Start/End: Complemental strand, 24915827 - 24915475
Alignment:
| Q |
115 |
cagagacatcaaggcatcaaatatcttaataacagacagtctaagggccaaagtggcagactttggttttgcaaggttggctccagaagaccctaatgca |
214 |
Q |
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| T |
24915827 |
cagagacatcaaggcatcaaatatcttaataacagacagtctaagggccaaagtggcagactttggttttgcaaggttggctccagaagaccctaatgca |
24915728 |
T |
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| Q |
215 |
actcatatttcaactcaagttaaaggaacagccggttatttggatcctgattatatgagaacacgccaactctcggaaaagagtgatgtttattcatttg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24915727 |
actcatatttcaactcaagttaaaggaacagccggttatttggatcctgattatatgagaacacgccaactctcggaaaagagtgatgtttattcatttg |
24915628 |
T |
|
| Q |
315 |
gtgtgttacttgttgaaatcatgacaggaagacatccagttgaaccaaagaaacccctcaatgagagagttacaattaaatgggtaagtacttatgtcaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24915627 |
gtgtgttacttgttgaaatcatgacaggaagacatccagttgaaccaaagaaacccctcaatgagagagttacaattaaatgggtaagtacttatgtcaa |
24915528 |
T |
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| Q |
415 |
actaatctcctaattataaagatagtatttatacttattatgagtgtatagat |
467 |
Q |
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| T |
24915527 |
actaatctcctaattataaagatagtatttatacttattatgagtgtatagat |
24915475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 116 - 366
Target Start/End: Complemental strand, 29511623 - 29511376
Alignment:
| Q |
116 |
agagacatcaaggcatcaaatatcttaataacagacagtctaagggccaaagtggcagactttggttttgcaaggttggctccagaagaccctaatgcaa |
215 |
Q |
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||||| ||||| |||||||| ||| |||| | || | ||||||||| |||||||||||||||||||||||||| ||| ||| ||||||||| ||||| |
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| T |
29511623 |
agagatatcaaagcatcaaacatcctaattagtgagaatctaagggctaaagtggcagactttggttttgcaagattg--tcc-gaagaccctggtgcaa |
29511527 |
T |
|
| Q |
216 |
ctcatatttcaactcaagttaaaggaacagccggttatttggatcctgattatatgagaacacgccaactctcggaaaagagtgatgtttattcatttgg |
315 |
Q |
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||||||||||||||||||||||||||||||| || ||| |||||||||| || ||||||| |||||| | |||||||||||||||||||||||||| |
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| T |
29511526 |
ctcatatttcaactcaagttaaaggaacagctggatatatggatcctgagtacttgagaacttatcaactcacagaaaagagtgatgtttattcatttgg |
29511427 |
T |
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| Q |
316 |
tgtgttacttgttgaaatcatgacaggaagacatccagttgaaccaaagaa |
366 |
Q |
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||| || ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29511426 |
tgtattgcttgttgaaatgatgacaggaagacatccagttgaaccaaagaa |
29511376 |
T |
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