View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_low_29 (Length: 448)
Name: NF8940_low_29
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 37748968 - 37748845
Alignment:
| Q |
19 |
tagtgctgatggcactagcactacaagttggcgacaattttttaattaatagttctggtttttcatttaaaaaatcataaccttaaa-tggatccaaatc |
117 |
Q |
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| T |
37748968 |
tagtgcggatggcactagctctacaagttggtgacaattttttaattaatagttcttgtttttcatttaaaaattcataacccaaaagtttatccaaatc |
37748869 |
T |
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| Q |
118 |
tcatatattccaccataatgtaat |
141 |
Q |
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| T |
37748868 |
tcatatattccaccataatgtaat |
37748845 |
T |
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Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 151 - 411
Target Start/End: Complemental strand, 37748423 - 37748188
Alignment:
| Q |
151 |
tcaaccttttatgttcagcgtacgttttatagtttccgtgcatatttga---atattggaacgagggacaaaaacataattatgaaaagagcagaaattg |
247 |
Q |
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| T |
37748423 |
tcaactttttatgttcagcgtacgttttatagtttccgtgcatatttgataaatattggaa-gaaggacaaaaacattat-------------gaaattg |
37748338 |
T |
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| Q |
248 |
gtagtataagcttccaaataaaatcaaaccaaatatttagtaaagcctcaatgcatgtgataaaacaggaggatgatagtagaaatcctaagcactcaac |
347 |
Q |
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| T |
37748337 |
gttgtataagcttccaaataaactcaaaccaaatctgt--------------gcatgtgataaaacagcagaatgatggtagaactcctaagcactcaac |
37748252 |
T |
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| Q |
348 |
ttgccctagattatttaacctttagacattacttttgcttcagtaagaatgtgttttatcttgt |
411 |
Q |
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| T |
37748251 |
ttgccctagattatttagtctttagatattactcttgcttcagtacgagcgtgttttatattgt |
37748188 |
T |
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