View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8940_low_3 (Length: 921)
Name: NF8940_low_3
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 15 - 513
Target Start/End: Complemental strand, 40296612 - 40296113
Alignment:
| Q |
15 |
tggacatcaagccattccccatctttgagcatttgaaggccacctaccttgtcatcttggaacagtaggatgacacctcctgcatcagtatgagctcgga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40296612 |
tggacatcaagccattccccatctttgagcatttgaaggccacctaccttgtcatcttggaacagtaggatgacacctcctgcatcagtgtgagctcgga |
40296513 |
T |
|
| Q |
115 |
gaccattcacaagttccggatgagggcagggtgggtagtggctgaccttggtgccaaagaaagcattgtctccttctccatcattcagtgccttcttgat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40296512 |
gaccattcacaagttccggatgagggcagggtgggtagtggctgaccttggtgccaaagaaagcattgtctccttctccatcattcagtgccttcttgat |
40296413 |
T |
|
| Q |
215 |
gtatccttttggtaagcccagattctcatccatcacttctgtgagactcactgccagtttctttaactcagaccgatattctgatatggtttccctgtca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40296412 |
gtatccttttggtaagcccagattctcatccatcacttctgtgagactcactgccagtttctttaactcagaccgatattctgacatggtttccctgtca |
40296313 |
T |
|
| Q |
315 |
ttcacatgagaagtcagttatacattcatgttgaaactctacctattatgctatgtcatgtcatgttctcacttagcatgttttgaagtgctgtccttga |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40296312 |
ttcacatgagaagtcagttatacattcatgttgaaactctacctattatgccatgtcatgtcatgttctcacttagcatgttttgaagtgctgtccttga |
40296213 |
T |
|
| Q |
415 |
atcctaa-aaaagtatattggtttcaactcttcaaaactttccaattttagatgttattttgaaatcacctattttagtaaacaagagtaagagaacttg |
513 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40296212 |
atcctaaaaaaagtatattggtttcaactcttcaaaactttccaattttagatgttattttgaaatcacctattttagtaaacaagagtaagagaacttg |
40296113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 599 - 902
Target Start/End: Complemental strand, 40296016 - 40295713
Alignment:
| Q |
599 |
gagtaagtataatgtataacagaagagagtatgcatgagatgacaggtggtgttctttctgatatcaatatgcttgactaacttttacttggaaagaaca |
698 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40296016 |
gagtaagtataatgtataacagaagagagtatgcatgagatgacaggtggtgttctttctgatatcaatatgcttgactaacttttacttggaaagaaca |
40295917 |
T |
|
| Q |
699 |
tttgatttgctttgtacctgaaacttggtgtattttctggccattcgttatcatccaagagagtgataacatcctcccagtccacattctccaatttctc |
798 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40295916 |
tttgatttgctttgtacctgaaacttggtgtattttctggccattcgttatcatccaagagagtgataacatcctcccagtccacattctccaatttctc |
40295817 |
T |
|
| Q |
799 |
actgctcttcttttcagctatatcattcagaagcttcactgttttggagtttttgaaattctcctctctttccagcttatagaactcagatgaaaccttc |
898 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40295816 |
actgctcttcttttcagctatatcattcagaagcttcactgttttggagtttttgaaattctcctctctttccagcttatagaactcagatgaaaccttc |
40295717 |
T |
|
| Q |
899 |
ttca |
902 |
Q |
| |
|
|||| |
|
|
| T |
40295716 |
ttca |
40295713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 605
Target Start/End: Complemental strand, 40296050 - 40296021
Alignment:
| Q |
576 |
acaagaaataaattcttcctggtgagtaag |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
40296050 |
acaagaaataaattcttcctggtgagtaag |
40296021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University