View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_low_31 (Length: 443)
Name: NF8940_low_31
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 2570474 - 2570161
Alignment:
| Q |
17 |
agataaacagtacacaggatagtaaggagcacaagagcggataagaggaagcgatgcctctggtaaagtgtcgcccaactaccaagtccatccttaggtc |
116 |
Q |
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| T |
2570474 |
agataaacagtacacaggatagtaaggagcacaagagcggataagaggaagcgatgcctctggtaaagtgtcgcccaactaccaagtccatccttaggtc |
2570375 |
T |
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| Q |
117 |
tcctgaaagatggagacttcaaacgaggagacgaagacaaaatgctgtcaagaaccatggcttctacaac-aaccttcttttgtccacctgaagctgcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
2570374 |
tcctgaaagatggagacttcaaacgaggagacgaagacaaaatgctgtcaagaaccatggcttctacaacaaaccttcttttgtccacctaaagctgcaa |
2570275 |
T |
|
| Q |
216 |
accatgcgacaaacactagtaaatatgtgattctatgaaaatgatatgaaaagcttaaatgatttatcaagctagccacttgacttttctctcctttcta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2570274 |
accatgcgacaaacactagtaaatatgtgattctatgaaaatgatatgaaaagcttaaatgatttatcaagctagccacttgacttttctctcctttcta |
2570175 |
T |
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| Q |
316 |
cataatcatgcata |
329 |
Q |
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|||||||||||||| |
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| T |
2570174 |
cataatcatgcata |
2570161 |
T |
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