View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_low_32 (Length: 417)
Name: NF8940_low_32
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 234165 - 233779
Alignment:
| Q |
18 |
aaaagtccttctcatcatacacatcaattttgtaaaatttgggttaagtccaatccaaattctttaaaaggtttgaacattaaaaattcttttcctgatt |
117 |
Q |
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| T |
234165 |
aaaagtccttctcatcatacacatcaattttgtaaaatttgggttaagtccaatccaaattctttaaaaggtttgaacattaaaatttcttttcctgatt |
234066 |
T |
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| Q |
118 |
acaccgtagaagctccgaccttttttccctttcaaaattcattcgaatgggaaaaatagagctttccatttgtgaggagcagcatgggtggatgtattaa |
217 |
Q |
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| T |
234065 |
acaccgtagaagctccgaccttttttccctttcaaaattcattcgaatgggaaaaatagagctttccatttgtgaggagcagcatgggtggatgtattaa |
233966 |
T |
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| Q |
218 |
ataaaaggaaatgggtcctatataattttactaattaaaaggtgccggaagaatgaaacagcccaaagtgttactagagaaatatacacggttcatttag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
233965 |
ataaaaggaaatgggtcctatataattttactaattaaaaggtgccggaagaatgaaacagcccaaagtgttactagagaaatatacacggttcatttag |
233866 |
T |
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| Q |
318 |
tgctttctattttactcttttccaccgtctaatgagagaccaaagttagttcattagcatcatttcatgcatgattcatgaccacca |
404 |
Q |
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| T |
233865 |
tgctttctattttactcttttccaccgtctaatgagagaccaaagttagttcattagcatcatttcatgcatgattcatgaccacca |
233779 |
T |
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