View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_low_33 (Length: 409)
Name: NF8940_low_33
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 12 - 393
Target Start/End: Complemental strand, 44950018 - 44949636
Alignment:
| Q |
12 |
gagagtgttgctcctatgattgagccatcaaataacaggttagagattcagaaattgnnnnnnn-gttaatacagtatattgaacttccattctttcact |
110 |
Q |
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| T |
44950018 |
gagagtgttgctcctatgattgagccatcaaataacaggttagagattcagaaattgttttttttgttaatacagtatattgaacttccattctttcact |
44949919 |
T |
|
| Q |
111 |
gttttcctttgaagaagttttctgaaatgatgtgataaatttgatttatttacttggtttgggtatgaatactgaatatataactatctatttgttttct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949918 |
gttttcctttgaagaagttttctgaaatgatgtgataaatttgatttatttacttggtttgggtatgaatactgaatatataactatctatttgttttct |
44949819 |
T |
|
| Q |
211 |
ttgattgaattttgaagctgttaataacttcatctggcagtaattgttactactacttgtcgcaaaatcaccaattttagatttagccataactgcttag |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44949818 |
ttgattgaattttgaagctgttaataacttcatctggcagtaattgttactactacttgtcgcaaaatcacgaattttagatttagccataactgcttag |
44949719 |
T |
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| Q |
311 |
aagtagcagtgatggtagtgacagcgatagtagtagtcatgataccaatagcatagtttttgtggaacaacatatttggtttt |
393 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949718 |
aagtagcagtgatggtagtgacagtgatagtagtagtcatgataccaatagcatagtttttgtggaacaacatatttggtttt |
44949636 |
T |
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