View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8940_low_35 (Length: 407)

Name: NF8940_low_35
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8940_low_35
NF8940_low_35
[»] chr2 (5 HSPs)
chr2 (10-246)||(34413353-34413589)
chr2 (256-374)||(34406066-34406184)
chr2 (256-360)||(34413659-34413763)
chr2 (16-95)||(34406332-34406411)
chr2 (167-253)||(1853078-1853162)
[»] chr1 (3 HSPs)
chr1 (13-253)||(29082340-29082585)
chr1 (256-360)||(29082187-29082291)
chr1 (10-193)||(29085015-29085208)
[»] chr6 (2 HSPs)
chr6 (10-176)||(24963483-24963645)
chr6 (24-176)||(20413203-20413351)
[»] chr3 (2 HSPs)
chr3 (10-176)||(23927423-23927585)
chr3 (10-176)||(23935019-23935181)
[»] scaffold0820 (1 HSPs)
scaffold0820 (10-176)||(3943-4105)
[»] scaffold0383 (1 HSPs)
scaffold0383 (24-176)||(13385-13533)
[»] chr8 (1 HSPs)
chr8 (24-176)||(22241275-22241423)
[»] chr5 (1 HSPs)
chr5 (10-176)||(27360924-27361092)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 34413353 - 34413589
Alignment:
Q  10 gtggtagatatagatgtagtaataagtggataatatgtagtaataagaggattaaataaatttgagtaagtaaaaggatgaattttattgatagaaaagt 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  34413353 gtggtggatatagatgtagtaataagtggataatatgtagtaataagaggattaaataaatttgagtaagtggaaggatgaattttattgatagaaaagt 34413452  T
Q  110 gagtgcaagaaaaaagcactaagatgccaacaactaaatcctaaaggacttagacaaatttcttagaaagacttcatacaacaacgagatatcttcttac 209  Q
    || ||||||| ||||| || ||| ||||||||||||||||||||||||||||||||| ||||||||| | |||| ||||||||| || | || |||||||    
T  34413453 gattgcaagagaaaagaaccaaggtgccaacaactaaatcctaaaggacttagacaagtttcttagataaactttatacaacaaagatagattttcttac 34413552  T
Q  210 agcttgctactactctcgtacaagcccatatttataa 246  Q
    ||||| || |||||||||||||||||| |||||||||    
T  34413553 agcttactcctactctcgtacaagcccttatttataa 34413589  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 256 - 374
Target Start/End: Complemental strand, 34406184 - 34406066
Alignment:
Q  256 tcttacataattttatgacattagtaatggcatgtctccatgcacggtggcactacattttcattacggctttttcttcccttcttcatgacacatatcc 355  Q
    |||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||   |||||||||| ||| |||||||||||||| |||    
T  34406184 tcttacataattttatgacattagtaacagcatgtctccatgcatggtggcactacattttcatcgtggctttttctccccatcttcatgacacatgtcc 34406085  T
Q  356 ttataaggtgtgtatcaga 374  Q
    |||||||||||||||||||    
T  34406084 ttataaggtgtgtatcaga 34406066  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 360
Target Start/End: Original strand, 34413659 - 34413763
Alignment:
Q  256 tcttacataattttatgacattagtaatggcatgtctccatgcacggtggcactacattttcattacggctttttcttcccttcttcatgacacatatcc 355  Q
    ||||||||| |||||| ||||||||||||||||||||||||||| |||| |||||||||||||| | |||||||||| || ||||||||||||||| |||    
T  34413659 tcttacatagttttataacattagtaatggcatgtctccatgcatggtgacactacattttcatcatggctttttctccctttcttcatgacacatgtcc 34413758  T
Q  356 ttata 360  Q
     ||||    
T  34413759 ctata 34413763  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 34406411 - 34406332
Alignment:
Q  16 gatatagatgtagtaataagtggataatatgtagtaataagaggattaaataaatttgagtaagtaaaaggatgaatttt 95  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||  | |||||||||||    
T  34406411 gatatagatgtagtaataagtggataatatgccgtaataagaggattaaataaatttgagtaagtggatggatgaatttt 34406332  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 253
Target Start/End: Original strand, 1853078 - 1853162
Alignment:
Q  167 atttcttagaaagacttcatacaacaacgagatatcttcttacagcttgctactactctcgtacaagcccatatttataagccaaaa 253  Q
    |||||||||| | |||||||||||||| ||| | |  || || |||||||| ||||||| |||||| ||| ||||||||||||||||    
T  1853078 atttcttagagaaacttcatacaacaaagagtttt--tcgtatagcttgctcctactcttgtacaaacccttatttataagccaaaa 1853162  T

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Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 29082585 - 29082340
Alignment:
Q  13 gtagatatagatgtagtaataagtggataatatgtagtaataagaggattaaataaatttgagtaagtaaaaggatgaattttattgatag-aaaagtga 111  Q
    ||||||||| ||||| ||||||||||||  ||||||||||||| | ||||||||||||||||||||||  ||||||||||||| ||||||| ||||||||    
T  29082585 gtagatataaatgtaataataagtggattgtatgtagtaataacatgattaaataaatttgagtaagtggaaggatgaatttttttgatagaaaaagtga 29082486  T
Q  112 gtgc------aagaaaaaagcactaagatgccaacaactaaatcctaaaggacttagacaaatttcttagaaagacttcatacaacaacgagatatcttc 205  Q
     | |      || |||||||||| ||  |||||||||||||||||||||||||||| |||| ||||||||| | ||||||||||| || ||| | ||  |    
T  29082485 ttacatgaagaaaaaaaaagcaccaaagtgccaacaactaaatcctaaaggacttaaacaagtttcttagagaaacttcatacaataaagagttttc--c 29082388  T
Q  206 ttacagcttgctactactctcgtacaagcccatatttataagccaaaa 253  Q
    ||||| |||| |||| ||||  ||||||||  |||||||||| |||||    
T  29082387 ttacaacttgttactgctctaatacaagcctttatttataagtcaaaa 29082340  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 256 - 360
Target Start/End: Complemental strand, 29082291 - 29082187
Alignment:
Q  256 tcttacataattttatgacattagtaatggcatgtctccatgcacggtggcactacattttcattacggctttttcttcccttcttcatgacacatatcc 355  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||| ||||||| ||||||||||||||| |||    
T  29082291 tcttacataattttatgacattagtaatggcatgtctccatgcatggtggcactacattttcatcatggcttcttcttcctttcttcatgacacatgtcc 29082192  T
Q  356 ttata 360  Q
    |||||    
T  29082191 ttata 29082187  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 29085015 - 29085208
Alignment:
Q  10 gtggtagatatagatgtagtaataagtggataatatgtagtaataagaggattaaataaatttgagtaagtaaaaggatgaattttattgatag-aaaag 108  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| ||| |  ||||||||||||||||||| | |||||    
T  29085015 gtggtagatatagatgtagtactaagtggataatatgtagtaataggatgattaaataaatttgattaa-tggaaggatgaattttattgatggaaaaag 29085113  T
Q  109 tgagtgcaa----------gaaaaaagcactaagatgccaacaactaaatcctaaaggacttagacaaatttcttagaaagacttcatacaacaa 193  Q
    ||| | |||          |||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||| | |||| ||| |||||    
T  29085114 tgattacaagaagaagaaggaaaaaagcactaaaatgccaacaactaaattccaaaggacttagacaaatttcttagagaaactttatataacaa 29085208  T

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Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 24963645 - 24963483
Alignment:
Q  10 gtggtagatatagatgtagtaataagtggataatatgtagtaataagaggattaaataaatttgagtaagtaaaaggatgaattttattgatagaaaagt 109  Q
    |||||| |||||  ||||||||||||| ||||||   |||||||||| ||||| |||| | || ||||||| |||| ||||||||||||||| ||||| |    
T  24963645 gtggtatatatatttgtagtaataagtagataatggatagtaataagtggattgaatagaattaagtaagtgaaag-atgaattttattgat-gaaaatt 24963548  T
Q  110 gagtgcaagaaaaaagcactaagatgccaacaactaaatcctaaaggacttagacaaatttcttaga 176  Q
    || | ||||||||  |||||||  |||||||||||||||||||||||||||||  || |||||||||    
T  24963547 gattacaagaaaa--gcactaaagtgccaacaactaaatcctaaaggacttagttaagtttcttaga 24963483  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 20413351 - 20413203
Alignment:
Q  24 tgtagtaataagtggataatatgtagtaataagaggattaaataaatttgagtaagtaaaaggatgaattttattgatagaaaagtgagtgcaagaaaaa 123  Q
    ||||||||||||| ||||||   |||||||||| ||||| |||| | || ||||||| || ||||||||||||||||| ||||| ||| | ||||||||     
T  20413351 tgtagtaataagtagataatggatagtaataagtggattgaatagaattaagtaagtgaa-ggatgaattttattgat-gaaaattgattacaagaaaa- 20413255  T
Q  124 agcactaagatgccaacaactaaatcctaaaggacttagacaaatttcttaga 176  Q
     |||||||  |||||| ||||||||||||||||||||||  || |||||||||    
T  20413254 -gcactaaagtgccaataactaaatcctaaaggacttagttaagtttcttaga 20413203  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 23927423 - 23927585
Alignment:
Q  10 gtggtagatatagatgtagtaataagtggataatatgtagtaataagaggattaaataaatttgagtaagtaaaaggatgaattttattgatagaaaagt 109  Q
    |||||| |||||  ||||||||||||| ||||||   |||||||||| ||||| |||| | || ||||||| |||| ||||||||||||||| ||||| |    
T  23927423 gtggtatatatatttgtagtaataagtagataatggatagtaataagtggattgaatagaattaagtaagtgaaag-atgaattttattgat-gaaaatt 23927520  T
Q  110 gagtgcaagaaaaaagcactaagatgccaacaactaaatcctaaaggacttagacaaatttcttaga 176  Q
    || | ||||||||  |||||||  |||||||||||||||||||||||||||||  || |||||||||    
T  23927521 gattacaagaaaa--gcactaaagtgccaacaactaaatcctaaaggacttagttaagtttcttaga 23927585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 23935181 - 23935019
Alignment:
Q  10 gtggtagatatagatgtagtaataagtggataatatgtagtaataagaggattaaataaatttgagtaagtaaaaggatgaattttattgatagaaaagt 109  Q
    |||||| |||||  || |||||||||| ||| |||  |||||||||| || || |||||| || |||||||||| ||||||||||||||||| ||||| |    
T  23935181 gtggtatatatatttgcagtaataagtagatgatagatagtaataagtgggttgaataaaattaagtaagtaaa-ggatgaattttattgat-gaaaatt 23935084  T
Q  110 gagtgcaagaaaaaagcactaagatgccaacaactaaatcctaaaggacttagacaaatttcttaga 176  Q
    || | ||||||||  |||||||  |||||||||||||||||||||||||||||  || |||||||||    
T  23935083 gattacaagaaaa--gcactaaagtgccaacaactaaatcctaaaggacttagttaagtttcttaga 23935019  T

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Target: scaffold0820 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0820
Description:

Target: scaffold0820; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 3943 - 4105
Alignment:
Q  10 gtggtagatatagatgtagtaataagtggataatatgtagtaataagaggattaaataaatttgagtaagtaaaaggatgaattttattgatagaaaagt 109  Q
    ||||||||||||  |||||| |||||| ||||||   |||||||||| ||||| |||||||||||||||||  |||||||||||||||| || ||||| |    
T  3943 gtggtagatatatttgtagttataagtagataatggatagtaataagtggattgaataaatttgagtaagt-gaaggatgaattttattaat-gaaaatt 4040  T
Q  110 gagtgcaagaaaaaagcactaagatgccaacaactaaatcctaaaggacttagacaaatttcttaga 176  Q
    || | ||||   ||||||| ||  ||||| |||||||||||||||||||||||  || |||||||||    
T  4041 gattacaag--gaaagcaccaaagtgccagcaactaaatcctaaaggacttagttaagtttcttaga 4105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 13385 - 13533
Alignment:
Q  24 tgtagtaataagtggataatatgtagtaataagaggattaaataaatttgagtaagtaaaaggatgaattttattgatagaaaagtgagtgcaagaaaaa 123  Q
    ||||||||||||| ||||||   |||||||||| ||||| |||| | || ||||||| || ||||||||||||||||| ||||| ||| | ||||||||     
T  13385 tgtagtaataagtagataatggatagtaataagtggattgaatagaattaagtaagtgaa-ggatgaattttattgat-gaaaattgattacaagaaaa- 13481  T
Q  124 agcactaagatgccaacaactaaatcctaaaggacttagacaaatttcttaga 176  Q
     |||||||  ||||||||||||| |||||||||||||||  || |||||||||    
T  13482 -gcactaaagtgccaacaactaactcctaaaggacttagttaagtttcttaga 13533  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 22241275 - 22241423
Alignment:
Q  24 tgtagtaataagtggataatatgtagtaataagaggattaaataaatttgagtaagtaaaaggatgaattttattgatagaaaagtgagtgcaagaaaaa 123  Q
    ||||||||||||| ||||||   |||||||||| ||||| |||| | || ||||||| || ||||||||||||||||| ||||| ||| | ||||||||     
T  22241275 tgtagtaataagtagataatggatagtaataagtggattgaatagaattaagtaagtgaa-ggatgaattttattgat-gaaaattgattacaagaaaa- 22241371  T
Q  124 agcactaagatgccaacaactaaatcctaaaggacttagacaaatttcttaga 176  Q
     |||||||  || ||||||||||||||||||||||||||  || |||||||||    
T  22241372 -gcactaaagtgtcaacaactaaatcctaaaggacttagttaagtttcttaga 22241423  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 27361092 - 27360924
Alignment:
Q  10 gtggtagatatagatgtagtaataagtggataatatgtagtaataagaggattaaataaatttgagtaagtaaaaggatgaatttta-ttgat-agaaaa 107  Q
    |||||| |||||  ||||||||||||| ||||||   |||||||||| ||||| |||||| || |||||||  |||||||||||||| ||||| | ||||    
T  27361092 gtggtatatatatttgtagtaataagtagataatggatagtaataagtggattgaataaaattaagtaagt-gaaggatgaattttatttgatgaaaaaa 27360994  T
Q  108 gtgagtgcaagaa---aaaagcactaagatgccaacaactaaatcctaaaggacttagacaaatttcttaga 176  Q
      || | ||||||   |||||||||||  ||||||||||||||||||  |||||||||  || |||||||||    
T  27360993 tggattacaagaaaagaaaagcactaaagtgccaacaactaaatcct--aggacttagttaagtttcttaga 27360924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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