View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_low_36 (Length: 393)
Name: NF8940_low_36
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 25678262 - 25678624
Alignment:
| Q |
18 |
aaattatcatttggttcatggacttttgttgttgatagttctctaaaattggatgaatccacttggaaaatactatgaccctggatattaatgttgttat |
117 |
Q |
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| T |
25678262 |
aaattatcatttggttcatggacttttgttgttgatagttctctaaaattggatgaatccatttggaaaatactatgaccctggatattaatgatgttat |
25678361 |
T |
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| Q |
118 |
tattggttctctcaatcatttttccatagaagtcagctctagagtcacttattgaactcatttgcaccatgttttcatacatggcaagagaagcatcccc |
217 |
Q |
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| T |
25678362 |
tattggttctctcaatcatttttccatagaagtcagctctagagtcacttattgaactcatttgcaccatgttttcatacatggcaagagaagcatcccc |
25678461 |
T |
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| Q |
218 |
atatgatccacatctgtnnnnnnnnnnnnnnnnntaaatcttcaattctaagacaataatagtcatttttcaactgtcctcgaggatttgaagtttaaac |
317 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
25678462 |
atatgatccacatctgtaaaaagaaaaagaaaaataaatcttcaattctaagacaataatagtcatttttcaactgccctcaaggatttgaagtttaaac |
25678561 |
T |
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| Q |
318 |
ccttgaggttacatttttaaaagtaaattatttaagacaatctaaaacgaagttagttagcaa |
380 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||| || ||||||||| ||| |||| |
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| T |
25678562 |
ccttgaggttacaattttaaatgtaaattatttaagacaatttagaacgaagttggttcgcaa |
25678624 |
T |
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