View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_low_41 (Length: 368)
Name: NF8940_low_41
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 43830607 - 43830292
Alignment:
| Q |
19 |
agcaaggccagcagctgcaagctgcaggtgcaaacgagcgacatctcgagaccagttagctccattcttacaaggtagcttaacagcaatgagattgagt |
118 |
Q |
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| T |
43830607 |
agcaaggccagcagctgcaagctgcaggtgcaaacgagcgacatctcgagaccagttagctccattcttacaaggtagcttaacagcaatgagattgagt |
43830508 |
T |
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| Q |
119 |
cttgtaccaggagatccaagacttggtaaagaagcgcaaacaggaacttcagtttcttcttcctcatcaatccattctggatatagagactcccatgtca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43830507 |
cttgtaccaggagatccaagacttggtaaagaagcgcaaacaggaacttcagtttcttcttcctcatcaatccattctggatatagagactcccatgtca |
43830408 |
T |
|
| Q |
219 |
cactgtttgcagcatgctctagatgtagagcaacatgtgtggcatcatgaaatttatgcttccaggtagaaatctcagtgttgttgaaatttagaagtcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43830407 |
cactgtttgcagcatgctctagatgtagagcaacatgtgtggcatcgtgaaatttatgcttccaggtagaaatctcagtgttgttgaaatttagaagtcc |
43830308 |
T |
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| Q |
319 |
aatgccttgaaattca |
334 |
Q |
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|||||||||||||||| |
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| T |
43830307 |
aatgccttgaaattca |
43830292 |
T |
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