View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8940_low_42 (Length: 361)
Name: NF8940_low_42
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_42 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 32781931 - 32782278
Alignment:
| Q |
1 |
aataagagtcccaaatcgaagccatttcagaaaccctccgccaatttcgcactcattaagtctggtagctaagaaccacctaagccatacaccaagaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32781931 |
aataagagtcccaaatcgaagccatttcagaaaccctccgccaatttcgcactcattaagtctagtagctaagaaccacctaagccatacaccaagaggt |
32782030 |
T |
|
| Q |
101 |
ccaacaatgcaggctaaccacaactgagcttcacccccaccatttttgaactcatttatttccaaagcactactcacaccccataacaaagctaatatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32782031 |
ccaacaatgcaggctaaccacaactgagcttcacccccaccatttttgaactcatttatttccaaagcactactcacaccccataacaaagctaatatca |
32782130 |
T |
|
| Q |
201 |
ccaacaacactatcgtcactaccaattgacgagggaagctgtcaacctcccaacttactttagagataaagttaccacttccatgtctcatgtttagtct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32782131 |
ccaacaacactatcgtcactaccaattgacgagggaagctgtcaaccttccaacttactttagagataaagttgccacttccatgtctcatgtttagtct |
32782230 |
T |
|
| Q |
301 |
ttttagt-accatttgaatcccttcgccgtccagaaaccaatgatgat |
347 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32782231 |
ttttagtaaccatttgaatcccttcgccgtccagaaaccaatgatgat |
32782278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University