View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8940_low_46 (Length: 332)

Name: NF8940_low_46
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8940_low_46
NF8940_low_46
[»] chr2 (16 HSPs)
chr2 (31-332)||(31067119-31067420)
chr2 (28-331)||(17840779-17841081)
chr2 (35-320)||(8944948-8945221)
chr2 (99-331)||(18593801-18594031)
chr2 (175-331)||(15325243-15325398)
chr2 (191-331)||(8162682-8162822)
chr2 (28-245)||(21713010-21713230)
chr2 (191-315)||(28645459-28645581)
chr2 (191-275)||(17395821-17395904)
chr2 (191-322)||(25867403-25867534)
chr2 (270-331)||(20476430-20476491)
chr2 (270-328)||(20475147-20475205)
chr2 (261-314)||(45550287-45550339)
chr2 (275-331)||(21713234-21713290)
chr2 (28-116)||(25867593-25867681)
chr2 (262-314)||(19121312-19121364)
[»] chr8 (3 HSPs)
chr8 (28-331)||(38801868-38802187)
chr8 (231-316)||(19708098-19708184)
chr8 (219-322)||(16208357-16208459)
[»] chr6 (14 HSPs)
chr6 (51-331)||(10374410-10374690)
chr6 (53-316)||(2944289-2944552)
chr6 (132-331)||(1118757-1118963)
chr6 (28-305)||(10290758-10291035)
chr6 (207-307)||(3904473-3904573)
chr6 (217-331)||(26947971-26948085)
chr6 (191-314)||(14448282-14448402)
chr6 (134-331)||(22917671-22917870)
chr6 (214-309)||(1103125-1103220)
chr6 (129-305)||(22884867-22885044)
chr6 (129-331)||(22902825-22903029)
chr6 (154-305)||(2401522-2401673)
chr6 (217-316)||(13553596-13553695)
chr6 (262-319)||(3356853-3356910)
[»] chr7 (14 HSPs)
chr7 (51-331)||(11917984-11918263)
chr7 (133-321)||(6629077-6629269)
chr7 (125-321)||(5299381-5299578)
chr7 (214-314)||(12484520-12484620)
chr7 (214-314)||(12505951-12506051)
chr7 (191-316)||(21383316-21383440)
chr7 (214-316)||(12657133-12657235)
chr7 (270-331)||(15708405-15708466)
chr7 (128-172)||(19153237-19153281)
chr7 (128-172)||(20752636-20752680)
chr7 (270-314)||(24814177-24814221)
chr7 (223-317)||(2392597-2392689)
chr7 (217-274)||(19387169-19387226)
chr7 (270-319)||(23174773-23174822)
[»] chr1 (6 HSPs)
chr1 (28-322)||(24285157-24285447)
chr1 (28-331)||(4649931-4650234)
chr1 (191-331)||(14911644-14911785)
chr1 (191-247)||(18838283-18838339)
chr1 (191-247)||(24549559-24549615)
chr1 (191-247)||(51110631-51110687)
[»] chr5 (4 HSPs)
chr5 (129-305)||(27598887-27599063)
chr5 (191-331)||(19006332-19006472)
chr5 (191-314)||(15117042-15117163)
chr5 (219-327)||(19663849-19663956)
[»] scaffold0070 (1 HSPs)
scaffold0070 (191-327)||(6002-6138)
[»] chr4 (6 HSPs)
chr4 (217-309)||(11864935-11865027)
chr4 (188-309)||(19565085-19565205)
chr4 (257-331)||(39668296-39668369)
chr4 (217-314)||(24608948-24609045)
chr4 (275-331)||(50908077-50908133)
chr4 (257-331)||(12492842-12492917)
[»] chr3 (7 HSPs)
chr3 (105-177)||(35510665-35510737)
chr3 (231-314)||(43901868-43901951)
chr3 (181-287)||(5535517-5535623)
chr3 (219-274)||(2165745-2165801)
chr3 (221-311)||(19583732-19583822)
chr3 (191-289)||(10082102-10082201)
chr3 (265-309)||(27716574-27716617)
[»] scaffold0054 (1 HSPs)
scaffold0054 (129-305)||(8384-8561)
[»] scaffold0423 (1 HSPs)
scaffold0423 (270-331)||(13834-13895)
[»] scaffold0157 (1 HSPs)
scaffold0157 (257-331)||(27560-27635)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 31 - 332
Target Start/End: Original strand, 31067119 - 31067420
Alignment:
Q  31 aaataatatatttgcttttagaatattgtgttgaagaccatattggatcagttgcgtgtttaactcgaattgtccatcaagcccatgctattcccaggct 130  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  31067119 aaataatatatttgcttttagaatattgtgttgaagaccgtattggatcagctgcttgtttagctcgaattgcccatcaagcccatgctattcccaggct 31067218  T
Q  131 atataaaggaagactctaaacctaagaagaccactgaagccgcaattctgaaagtatcgattagggttttagtatgtccatttttgtttgtgagccactc 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  31067219 atataaaggaagactctaaacctaagaagaccactgaagccgcaattctgaaagtatcaattagggttttagtatgtccatttttgtttgtgagccactt 31067318  T
Q  231 ttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattctatttcttggagtgt 330  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  31067319 gtgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcataagcttttaagcaagagtagattctatttctcggagtgt 31067418  T
Q  331 ga 332  Q
    ||    
T  31067419 ga 31067420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 28 - 331
Target Start/End: Original strand, 17840779 - 17841081
Alignment:
Q  28 aggaaataatatatttgcttttagaatattgtgttgaagaccatattggatcagttgcgtgtttaactcgaattgtccatcaagcccatgctattcccag 127  Q
    |||||| ||||||  |||||  ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| ||||||||||||||||||| |||    
T  17840779 aggaaacaatatacatgcttccagaatattgtgttgaagaccatattggataagttgtgtgtttagctcgaattgttcatcaagcccatgctattctcag 17840878  T
Q  128 gctatataaaggaagactctaaacctaagaagaccactgaagccgcaattctgaaagtatcgattagggttttagtatgtccatttttgtttgtgagcca 227  Q
     ||||||||||||||||| |||||||||||| || |||||||||||| || ||||||| || |||||||||||||| |||||||| |||||||||||| |    
T  17840879 actatataaaggaagactttaaacctaagaatactactgaagccgcatttgtgaaagtgtcaattagggttttagtctgtccattgttgtttgtgagcta 17840978  T
Q  228 ctcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattctatttcttggag 327  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||||| |||||||||||| || |||||||| |||||||| |||| | ||| ||||||    
T  17840979 ctcttgtatcacgttgatgctagagttggactgatagttgagttgtaa-ttgtgaatcacttgtcagcttttacgcaagagtggattttgtttattggag 17841077  T
Q  328 tgtg 331  Q
    ||||    
T  17841078 tgtg 17841081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 35 - 320
Target Start/End: Complemental strand, 8945221 - 8944948
Alignment:
Q  35 aatatatttgcttttagaatattgtgttgaagaccatattggatcagttgcgtgtttaactcgaattgtccatcaagcccatgctattcccaggctatat 134  Q
    ||||||||||| ||||||||||| |||||||||||  ||||||||||            | |||||||| ||||||||||||| ||||| |||||||||     
T  8945221 aatatatttgcatttagaatattatgttgaagaccggattggatcag------------cccgaattgttcatcaagcccatgttattctcaggctatac 8945134  T
Q  135 aaaggaagactctaaacctaagaagaccactgaagccgcaattctgaaagtatcgattagggttttagtatgtccatttttgtttgtgagccactcttgt 234  Q
    |||  |||||||| ||||||||||||| |||||| | |||||| |  |||| ||  ||||| ||||||||||||| || || ||||||||||||||||||    
T  8945133 aaaaaaagactctgaacctaagaagactactgaaactgcaattgtctaagtgtcatttaggattttagtatgtccgttgttatttgtgagccactcttgt 8945034  T
Q  235 atcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattctattt 320  Q
    |||| ||||||||| |||||| | || |||||  ||||||| ||||||||||||||||||||||| ||||||||| ||||||||||    
T  8945033 atcaccttgatgctggagttggattgttagttatgttgtaagttgtgaatcactcgtaagctttttagcaagagtggattctattt 8944948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 99 - 331
Target Start/End: Complemental strand, 18594031 - 18593801
Alignment:
Q  99 attgtccatcaagcccatgctattcccaggctatataaaggaagactctaaacctaagaagaccactgaagccgcaattctgaaagtatcgattagggtt 198  Q
    ||||| |||||||| |||||   || ||||||||||||||||| ||||||||||||||||||| ||| || || || ||  |||||| ||  ||||||||    
T  18594031 attgttcatcaagctcatgcgtatctcaggctatataaaggaa-actctaaacctaagaagacaactaaaaccacattttggaaagtgtcatttagggtt 18593933  T
Q  199 ttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttt 298  Q
    ||||| |||||||| |||||||||||||||||||||||||  |||||||||||||| |||||||||||| ||||||| ||| |||||||||| |||||||    
T  18593932 ttagtctgtccattgttgtttgtgagccactcttgtatcacattgatgctagagttaaactgatagttgcgttgtaa-ttgcgaatcactcgcaagcttt 18593834  T
Q  299 taagcaagagtagattctatttcttggagtgtg 331  Q
    |||| |||| | |||||||||| ||||||||||    
T  18593833 taagaaagaatggattctatttattggagtgtg 18593801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 175 - 331
Target Start/End: Complemental strand, 15325398 - 15325243
Alignment:
Q  175 attctgaaagtatcgattagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgta 274  Q
    ||||| ||||| || |||||||||||||| | | |||| ||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||    
T  15325398 attctcaaagtgtcaattagggttttagtttatgcattgttgtttgtgagccacccttgtatcatcttgatgctagagtttgactgatagttgagttgta 15325299  T
Q  275 atttgtgaatcactcgtaagcttttaagcaagagtagattctatttcttggagtgtg 331  Q
    | |||||||||||| ||||||||||||||||||||  ||||  ||||||||||||||    
T  15325298 a-ttgtgaatcacttgtaagcttttaagcaagagtgaattccgtttcttggagtgtg 15325243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 191 - 331
Target Start/End: Original strand, 8162682 - 8162822
Alignment:
Q  191 ttagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcg 290  Q
    |||| ||||||||||||| ||| ||||||||||||||||| ||||||  ||||||||| |||||| |||  |||||||||||||  |||||||||||| |    
T  8162682 ttagagttttagtatgtctattgttgtttgtgagccactcatgtatctccttgatgcttgagttggacttgtagttgagttgtatgttgtgaatcacttg 8162781  T
Q  291 taagcttttaagcaagagtagattctatttcttggagtgtg 331  Q
    ||||||||||||||| |||| ||| | ||||||| ||||||    
T  8162782 taagcttttaagcaaaagtaaattttgtttcttgtagtgtg 8162822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 245
Target Start/End: Original strand, 21713010 - 21713230
Alignment:
Q  28 aggaaataatatatttgcttttagaatattgt-gttgaagaccatattggatcagttgcgt-gtttaactcgaattgtccatcaagcccatgctattccc 125  Q
    |||||| ||||||| ||||| | ||||||||| |||||| ||| ||||| ||||| ||  | ||||| |  ||||||| ||||||||||||||  ||| |    
T  21713010 aggaaacaatatatatgcttctggaatattgtagttgaataccttattgaatcagctggattgtttagcctgaattgttcatcaagcccatgcgtttctc 21713109  T
Q  126 aggctatataaaggaagactctaaacctaagaagaccactgaagccgca-attctgaaagtatcgattagggttttagtatgtccatttttgtttgtgag 224  Q
    |||||||||||||||||||| ||| | |||||||| || ||||||| ||  || ||||||| || ||||||||||||||  ||||||| |||||| ||||    
T  21713110 aggctatataaaggaagactttaagcataagaagatcattgaagccacattttgtgaaagtgtcaattagggttttagtccgtccattgttgtttatgag 21713209  T
Q  225 ccactcttgtatcatcttgat 245  Q
    ||||| |||||||| ||||||    
T  21713210 ccactattgtatcaccttgat 21713230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 191 - 315
Target Start/End: Original strand, 28645459 - 28645581
Alignment:
Q  191 ttagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcg 290  Q
    |||||||||| | |||||| || || ||||||||| |||||||||||| |||||| |||||| || |||| ||||||||||||||  | |||||||||||    
T  28645459 ttagggttttggaatgtcc-ttgttatttgtgagcaactcttgtatcaccttgatactagagctggactg-tagttgagttgtaagctttgaatcactcg 28645556  T
Q  291 taagcttttaagcaagagtagattc 315  Q
    ||||||||||||||||||| |||||    
T  28645557 taagcttttaagcaagagtggattc 28645581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 17395904 - 17395821
Alignment:
Q  191 ttagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaa 275  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||| ||| |||||||||||| |||| ||||||||||||||    
T  17395904 ttagggttttagtatgtcg-ttgttgtttgtgagccactcttgtatcaccttaatgctagagttggactgttagttgagttgtaa 17395821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 191 - 322
Target Start/End: Complemental strand, 25867534 - 25867403
Alignment:
Q  191 ttagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcg 290  Q
    ||||| ||||||| | |||||| || ||||||||||||||  |||||| ||| ||| | ||| || ||| ||||||||||||||| |||||||||||| |    
T  25867534 ttaggattttagtctatccattgttttttgtgagccactcacgtatcaccttaatgtttgaggtggacttatagttgagttgtaagttgtgaatcacttg 25867435  T
Q  291 taagcttttaagcaagagtagattctatttct 322  Q
    |||| ||||||||||||||  ||||| |||||    
T  25867434 taagattttaagcaagagtgaattctgtttct 25867403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 20476430 - 20476491
Alignment:
Q  270 ttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattctatttcttggagtgtg 331  Q
    |||| |||||||||| |||||||||||||||||||||| | |||| ||||||||||||||||    
T  20476430 ttgttatttgtgaataactcgtaagcttttaagcaagattggattttatttcttggagtgtg 20476491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 20475147 - 20475205
Alignment:
Q  270 ttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattctatttcttggagt 328  Q
    |||| |||||||||| |||||||||||||||||||||| | |||| |||||||||||||    
T  20475147 ttgttatttgtgaataactcgtaagcttttaagcaagattggattttatttcttggagt 20475205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 45550339 - 45550287
Alignment:
Q  261 atagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagatt 314  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  45550339 atagttgagttgtaatt-gtgaatcactcgtaagcttctaagcaagagtggatt 45550287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 21713234 - 21713290
Alignment:
Q  275 atttgtgaatcactcgtaagcttttaagcaagagtagattctatttcttggagtgtg 331  Q
    |||||||||||||| ||||||||||||||||||||  ||| | ||| ||||||||||    
T  21713234 atttgtgaatcacttgtaagcttttaagcaagagtgtattatgtttattggagtgtg 21713290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 25867681 - 25867593
Alignment:
Q  28 aggaaataatatatttgcttttagaatattgtgttgaagaccatattggatcagttgcgtgtttaactcgaattgtccatcaagcccat 116  Q
    |||||||||||||| ||||| | |||||||||  | |||||| |||||||||||  | ||||||| ||||| |||  ||||||||||||    
T  25867681 aggaaataatatatatgcttatggaatattgtactaaagaccgtattggatcagccgtgtgtttagctcgatttgctcatcaagcccat 25867593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 19121364 - 19121312
Alignment:
Q  262 tagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagatt 314  Q
    ||||||||||||||  | | ||||||||||||| || ||||||||||||||||    
T  19121364 tagttgagttgtaaactctaaatcactcgtaagattgtaagcaagagtagatt 19121312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 28 - 331
Target Start/End: Original strand, 38801868 - 38802187
Alignment:
Q  28 aggaaataatatatttgcttttagaatattgtgttgaagaccatattggatcagttgcgtgtttaactcgaattgtccatcaagcccatgctattcccag 127  Q
    |||||| ||||||| || || | |||||||||| |||||||| ||||||||||| || ||||||| | |||||||||||||||||||||||||||| |||    
T  38801868 aggaaacaatatatatgtttctggaatattgtgctgaagaccgtattggatcagctgtgtgtttagcccgaattgtccatcaagcccatgctattctcag 38801967  T
Q  128 gctatataaaggaag-----------------actctaaacctaagaagaccactgaagccgcaattctgaaagtatcgattagggttttagtatgtcca 210  Q
    | |||||||||||||                 ||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||    
T  38801968 gttatataaaggaaggttctaaacctatgaagactctaaacctaagaagactactgaagccgcaattctgaaagtgtcaattagggttttagtatgtcca 38802067  T
Q  211 tttttgtttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagta 310  Q
    || ||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||| |||||||     
T  38802068 ttgttgtttgtgagtcactcttgtatcaccttgatgctagagttggactgatagttgagttgtaa-gtgtgaatcactcgtaagcttttaatcaagagtg 38802166  T
Q  311 gattctatttcttggagtgtg 331  Q
    |||||| |||||| |||||||    
T  38802167 gattctgtttcttagagtgtg 38802187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 316
Target Start/End: Original strand, 19708098 - 19708184
Alignment:
Q  231 ttgtatcatcttgatgc-tagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattct 316  Q
    |||||||| |||||||| | |||||| |||  ||||||||||||||  | |||| ||||||||| ||||||||||||||| ||||||    
T  19708098 ttgtatcaccttgatgcattgagttggacttttagttgagttgtaagctttgaaccactcgtaaccttttaagcaagagtggattct 19708184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 322
Target Start/End: Original strand, 16208357 - 16208459
Alignment:
Q  219 tgtgagccactcttgtatcatcttgatgc-tagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattcta 317  Q
    |||||||| |||||||||||  ||||||| |||||||| |||| || ||||||||||| || |||||||||   |||||| |||||| |||| ||||||     
T  16208357 tgtgagccgctcttgtatcacgttgatgcatagagttggactg-taattgagttgtaaattctgaatcact-taaagcttgtaagcatgagttgattctt 16208454  T
Q  318 tttct 322  Q
    |||||    
T  16208455 tttct 16208459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 51 - 331
Target Start/End: Original strand, 10374410 - 10374690
Alignment:
Q  51 gaatattgtgttgaagaccatattggatcagttgcgtgtttaactcgaattgtccatcaagcccatgctattcccaggctatataaaggaagactctaaa 150  Q
    |||||||||||||||||||||||||||||||||| ||||||| | |||||||  ||||||||||||||| ||| ||  ||||||||||||| || |||||    
T  10374410 gaatattgtgttgaagaccatattggatcagttgtgtgtttagcccgaattgctcatcaagcccatgcttttctcaaactatataaaggaaaacgctaaa 10374509  T
Q  151 cctaagaagaccactgaagccgcaattc-tgaaagtatcgattagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgcta 249  Q
    ||||||||||  |||||||  ||| ||| ||||||| || |||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||||||    
T  10374510 cctaagaagataactgaagttgcatttcgtgaaagtgtcaattaggattttagtctgtccattcttgtttgtgagccactcttgtatcaccttgatgcta 10374609  T
Q  250 gagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattctatttcttggagtgtg 331  Q
    |||||| ||||||||||||||||||| ||||||||||||| |||||||||||| |||| |||||||| ||  ||||||||||    
T  10374610 gagttggactgatagttgagttgtaa-ttgtgaatcactcataagcttttaagtaagaatagattctgttgattggagtgtg 10374690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 53 - 316
Target Start/End: Complemental strand, 2944552 - 2944289
Alignment:
Q  53 atattgtgttgaagaccatattggatcagttgcgtgtttaactcgaattgtccatcaagcccatgctattcccaggctatataaaggaagactctaaacc 152  Q
    |||| |||||||||||| ||||||||||  |  ||||||| | |||||||  ||||||| ||||||||||| | ||||||||||||||||||| ||||||    
T  2944552 atatagtgttgaagaccgtattggatcaactatgtgtttagcccgaattgctcatcaagtccatgctattctcgggctatataaaggaagactataaacc 2944453  T
Q  153 taagaagaccactgaagccgcaattc-tgaaagtatcgattagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgctaga 251  Q
    ||||||| | |||||||||||| ||  ||||||| || |||||||||||| ||| | |||| ||||||||||||||||||||||||| ||||||||||||    
T  2944452 taagaagtctactgaagccgcattttgtgaaagtgtcaattagggttttattatattcattgttgtttgtgagccactcttgtatcaccttgatgctaga 2944353  T
Q  252 gttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattct 316  Q
    |||| ||||||||||||||||||| |||||||||| || |||||||||||| |||||| ||||||    
T  2944352 gttggactgatagttgagttgtaa-ttgtgaatcaatcttaagcttttaagtaagagtggattct 2944289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 132 - 331
Target Start/End: Complemental strand, 1118963 - 1118757
Alignment:
Q  132 tataaaggaagactctaaacctaagaaga--ccactgaagccgcaattctgaaagtatcgattagggttttagtatgtccatttttgtttgtga---gcc 226  Q
    ||||||||| ||| |||||||||||||||  |||||||| ||||||| |||||||| || ||||||||||| || || ||||  ||||||||||   |||    
T  1118963 tataaaggatgaccctaaacctaagaagagaccactgaaaccgcaatactgaaagtgtcaattagggttttggtttgcccatggttgtttgtgatgtgcc 1118864  T
Q  227 actcttgt---atcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattctatttctt 323  Q
    ||||||||   |||| ||| ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||  || |||||| ||||||    
T  1118863 actcttgttgtatcaccttcatggtagagttggactgatagttgagttgtaatt-gtgaatcactcgtaagcttttaagcaaaggtggattctgtttctt 1118765  T
Q  324 ggagtgtg 331  Q
    ||||||||    
T  1118764 ggagtgtg 1118757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 28 - 305
Target Start/End: Complemental strand, 10291035 - 10290758
Alignment:
Q  28 aggaaataatatatttgcttttagaatattgt-gttgaagaccatattggatcagttgcgt-gtttaactcgaattgtccatcaagcccatgctattccc 125  Q
    |||||| | ||||| ||||| ||||||||||| |||| ||||  ||||||||||  ||  | ||||| ||||| || | |||||||||||||| |||| |    
T  10291035 aggaaacattatatatgcttctagaatattgtagttggagactctattggatcaactgtattgtttagctcgattttttcatcaagcccatgc-attctc 10290937  T
Q  126 aggctatataaaggaagactctaaacctaa-gaagaccactgaagccgcaattctgaaagtatcgattagggttttagtatgtccatttttgtttgtgag 224  Q
     | |||||||||||||||||| |||||||| |||||| ||||||||| ||||| | ||||| ||  ||||| |  |||| |||| ||| || ||||||||    
T  10290936 tgactatataaaggaagactc-aaacctaaagaagacgactgaagccacaattgttaaagtgtcatttaggataatagtctgtctattgttatttgtgag 10290838  T
Q  225 ccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaa 305  Q
    | |||||||||||| |||||| || ||| || ||||| ||||||||||| |||||||||||||||  ||||||||||||||    
T  10290837 ctactcttgtatcaccttgatacttgagctggactgaaagttgagttgt-atttgtgaatcactctgaagcttttaagcaa 10290758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 207 - 307
Target Start/End: Original strand, 3904473 - 3904573
Alignment:
Q  207 tccatttttgtttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaag 306  Q
    |||||| ||||||||||||||||| || |||| ||||||||| |||||| ||| |||||||||||||| |||||||||||||| ||||||||||||||||    
T  3904473 tccattgttgtttgtgagccactcatggatcaccttgatgcttgagttggacttatagttgagttgtattttgtgaatcactcataagcttttaagcaag 3904572  T
Q  307 a 307  Q
    |    
T  3904573 a 3904573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 331
Target Start/End: Original strand, 26947971 - 26948085
Alignment:
Q  217 tttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattct 316  Q
    ||||||||||||||| |||||| ||| ||||| |||||  |||  |||||| ||||||| |||||||||||||||||||||| |||||||||| |||| |    
T  26947971 tttgtgagccactctcgtatcaccttaatgcttgagttagacttctagttgtgttgtaagttgtgaatcactcgtaagctttaaagcaagagtggattat 26948070  T
Q  317 atttcttggagtgtg 331  Q
     ||||| ||||||||    
T  26948071 gtttctcggagtgtg 26948085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 314
Target Start/End: Original strand, 14448282 - 14448402
Alignment:
Q  191 ttagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcg 290  Q
    ||||||||||||| ||||| ||   |||||||||||||||  |||||| ||||||||| |||||  |||  |||||||||||||| || | |||| |||     
T  14448282 ttagggttttagtctgtccgtt---gtttgtgagccactcacgtatcaccttgatgcttgagttagacttgtagttgagttgtaagttataaatcgctca 14448378  T
Q  291 taagcttttaagcaagagtagatt 314  Q
    ||||||||||||||||||| ||||    
T  14448379 taagcttttaagcaagagtggatt 14448402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 331
Target Start/End: Original strand, 22917671 - 22917870
Alignment:
Q  134 taaaggaagactctaaacctaa-gaagaccactgaagccgcaattctgaaa-gtatcgattagggttttagtatgtccatttttgtttgtgagccactct 231  Q
    ||||||||||||| |||||||| |||||| |||||||||||||||  |||| || ||   ||| |||||||| ||| | || || |||||||||||||||    
T  22917671 taaaggaagactc-aaacctaaagaagactactgaagccgcaattgagaaaagtgtcatctagagttttagtttgtactttgttatttgtgagccactct 22917769  T
Q  232 tgtatcatcttgatgc-tagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagc-aagagtagattctatttcttggagtg 329  Q
    |||||   |||||||| | |||||| ||||||||||||||||| |||||||||   |||  |||||||||||| || ||||| || ||||| ||||||||    
T  22917770 tgtatacccttgatgcattgagttggactgatagttgagttgt-atttgtgaactgctctaaagcttttaagcaaatagtaggttttatttattggagtg 22917868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 309
Target Start/End: Original strand, 1103125 - 1103220
Alignment:
Q  214 ttgtttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagt 309  Q
    ||||||||||||||||| ||||||| |||| |||   ||||| |||  |||||||||||||  |||||||||||| ||||| ||||||||||||||    
T  1103125 ttgtttgtgagccactcatgtatcaccttgttgcctaagttggacttgtagttgagttgtatgttgtgaatcacttgtaagattttaagcaagagt 1103220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 305
Target Start/End: Original strand, 22884867 - 22885044
Alignment:
Q  129 ctatataaaggaagactctaaacctaa-gaagaccactgaagccgcaattctgaaa-gtatcgattagggttttagtatgtccatttttgtttgtgagcc 226  Q
    |||||||||||||||||| |||||||| |||||| ||||||| |||||||  |||| || ||   ||| |||||||| ||| | || || ||||||||||    
T  22884867 ctatataaaggaagactc-aaacctaaagaagactactgaagtcgcaattgagaaaagtgtcatctagagttttagtttgtactttgttatttgtgagcc 22884965  T
Q  227 actcttgtatcatcttgatgc-tagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaa 305  Q
    ||||||||||   |||||||| | |||||| ||||||||||||||||| |||||||||   |||  ||||||||||||||    
T  22884966 actcttgtatacccttgatgcattgagttggactgatagttgagttgt-atttgtgaactgctctaaagcttttaagcaa 22885044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 331
Target Start/End: Original strand, 22902825 - 22903029
Alignment:
Q  129 ctatataaaggaagactctaaacctaa-gaagaccactgaagccgcaattctgaaa-gtatcgattagggttttagtatgtccatttttgtttgtgagcc 226  Q
    |||||||||||||||||| |||||||| |||||| ||||||| || ||||  |||| || ||   ||| |||||| | ||| | || || ||||||||||    
T  22902825 ctatataaaggaagactc-aaacctaaagaagactactgaagtcgtaattgagaaaagtgtcatctagagttttattttgtactttgttatttgtgagcc 22902923  T
Q  227 actcttgtatcatcttgatgc-tagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagc-aagagtagattctatttcttg 324  Q
    ||||||||||   |||||||| | |||||| ||||||||||||||||| |||||||||   |||  |||||||||||| || ||||| || ||||| |||    
T  22902924 actcttgtatacccttgatgcattgagttggactgatagttgagttgt-atttgtgaactgctctaaagcttttaagcaaatagtaggttttatttattg 22903022  T
Q  325 gagtgtg 331  Q
    |||||||    
T  22903023 gagtgtg 22903029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 305
Target Start/End: Complemental strand, 2401673 - 2401522
Alignment:
Q  154 aagaagaccactgaagccgcaattctgaa-agtatcgattagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgc-taga 251  Q
    |||||||| |||||||||||||||  ||| ||  ||  ||||| ||||||| ||||| || || ||||| || |||| |||||||| |||||||| | ||    
T  2401673 aagaagacgactgaagccgcaattgagaatagagtcatttaggattttagtctgtcc-ttgttatttgttagacacttttgtatcaccttgatgcattga 2401575  T
Q  252 gttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaa 305  Q
    | |||||||||||||||||||| |||| |||||||||   ||||||||||||||    
T  2401574 gctgaactgatagttgagttgt-atttatgaatcactttaaagcttttaagcaa 2401522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 316
Target Start/End: Complemental strand, 13553695 - 13553596
Alignment:
Q  217 tttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattct 316  Q
    ||||||||||||||||||||||  |||||  |||||||| |||  ||||||||||||||  | | ||||||| | |||||| ||||||| ||| ||||||    
T  13553695 tttgtgagccactcttgtatcacgttgatattagagttggactattagttgagttgtaaactctaaatcacttgcaagcttgtaagcaatagtggattct 13553596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 3356853 - 3356910
Alignment:
Q  262 tagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattctatt 319  Q
    ||||||||||||||  | |||||||||| ||||||| ||||||||||  |||||||||    
T  3356853 tagttgagttgtaaactttgaatcactcataagcttgtaagcaagagcggattctatt 3356910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 51 - 331
Target Start/End: Original strand, 11917984 - 11918263
Alignment:
Q  51 gaatattgtgttgaagaccatattggatcagttgcgtgtttaactcgaattgtccatcaagcccatgctattcccaggctatataaaggaagactctaaa 150  Q
    ||||||||||||||||||| ||||||||||| || ||||||| |  ||||||| ||||||||||||||  |||  |||||||||||||||| ||| || |    
T  11917984 gaatattgtgttgaagaccgtattggatcagctgagtgtttagcctgaattgttcatcaagcccatgcgtttcttaggctatataaaggaatactttaca 11918083  T
Q  151 cctaagaagaccactgaagccgcaattctgaaagtatcgattagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgctag 250  Q
    ||||||||||||| ||||| |||| || || |||| || ||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| |     
T  11918084 cctaagaagaccagtgaagtcgcatttgtggaagtgtcaattagggttttagtatgtccattgttgtttgtgagccactcttgtttcaccttgatgcgaa 11918183  T
Q  251 agttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattctatttcttggagtgtg 331  Q
    || ||   ||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||    
T  11918184 agatggtatgatagttgagctgtaa-ttgtgaatcactcgtaagtttttaagcaagagtagattctgtttattgaagtgtg 11918263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 133 - 321
Target Start/End: Original strand, 6629077 - 6629269
Alignment:
Q  133 ataaaggaagactctaaacctaagaagaccactgaagccgcaattctgaaagtatcgattagggttttagtatgtccatttttgtttgtgagccactctt 232  Q
    ||||||||||||||||||||||||||||| || ||||  ||||     ||||| || |||||||||||| | |||||||| |||||||||||||||||||    
T  6629077 ataaaggaagactctaaacctaagaagactacggaagttgcaaaagc-aaagtgtctattagggttttaatctgtccattgttgtttgtgagccactctt 6629175  T
Q  233 gtat-----catcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattctatttc 321  Q
    ||||     || ||||||||| |||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||    
T  6629176 gtattgtatcaccttgatgcttgagttggacttatagttgagttgtaagttgtgaatcactcgtaagcttttaagcaagagtggattctgtttc 6629269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 125 - 321
Target Start/End: Complemental strand, 5299578 - 5299381
Alignment:
Q  125 caggctatataaaggaagactctaaacctaagaagaccactgaagccg-caattctgaaagtatcgattagggttttagtatgtccatttttgtttgtga 223  Q
    |||| ||||||||||||||||| | |||||||||||||| |||||||| || ||   ||||  || ||||| |||||||| ||||| || || |||||||    
T  5299578 caggttatataaaggaagactcaagacctaagaagaccattgaagccgtcatttacaaaagagtcaattagagttttagtctgtcctttgttttttgtga 5299479  T
Q  224 gccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattctatttc 321  Q
    |||||||  |||||| ||||||||| |||||| ||   |||||||||||||| ||||||||||||  |||||||||||| ||||||||||||| ||||    
T  5299478 gccactcacgtatcaccttgatgcttgagttggacatgtagttgagttgtaagttgtgaatcacttataagcttttaagaaagagtagattctgtttc 5299381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 214 - 314
Target Start/End: Complemental strand, 12484620 - 12484520
Alignment:
Q  214 ttgtttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagat 313  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| || ||||||||||| |||||||||||||||||| |||    
T  12484620 ttgtttgtgagccactcttgtatcaccttgatgctagagttgcactgttagttgagttgtaagttctgaatcactcgcaagcttttaagcaagagtggat 12484521  T
Q  314 t 314  Q
    |    
T  12484520 t 12484520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 214 - 314
Target Start/End: Complemental strand, 12506051 - 12505951
Alignment:
Q  214 ttgtttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagat 313  Q
    ||||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||||| || ||||||||||| |||||||||||||||||| |||    
T  12506051 ttgtttgtgagccactcttatatcaccttgatgctagagttgcactgttagttgagttgtaagttctgaatcactcgcaagcttttaagcaagagtggat 12505952  T
Q  314 t 314  Q
    |    
T  12505951 t 12505951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 191 - 316
Target Start/End: Original strand, 21383316 - 21383440
Alignment:
Q  191 ttagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcg 290  Q
    |||||||||| |||||||| || |||||||| |||||||||||||||| ||||||||||||  || |||| || ||||||||||| |||||||||| |||    
T  21383316 ttagggttttggtatgtcc-ttgttgtttgtaagccactcttgtatcaccttgatgctagatatggactgttaattgagttgtaagttgtgaatcattcg 21383414  T
Q  291 taagcttttaagcaagagtagattct 316  Q
     |||||||||| ||||||| ||||||    
T  21383415 caagcttttaaacaagagtggattct 21383440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 214 - 316
Target Start/End: Complemental strand, 12657235 - 12657133
Alignment:
Q  214 ttgtttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagat 313  Q
    ||||||||||||||||||||||||| ||||||||||||| || |||  |||||||||||||| || | ||||||| | |||||||||||||||||| |||    
T  12657235 ttgtttgtgagccactcttgtatcaccttgatgctagagctgcactattagttgagttgtaagtttttaatcacttgcaagcttttaagcaagagtggat 12657136  T
Q  314 tct 316  Q
    |||    
T  12657135 tct 12657133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 15708466 - 15708405
Alignment:
Q  270 ttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattctatttcttggagtgtg 331  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| | ||||||||||||||    
T  15708466 ttgtattttgtgaatcactcgtaagcttttaagcaagagtggattttgtttcttggagtgtg 15708405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 19153237 - 19153281
Alignment:
Q  128 gctatataaaggaagactctaaacctaagaagaccactgaagccg 172  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||    
T  19153237 gctatataaaggaagactcttaacctaagaagactactgaagccg 19153281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 20752636 - 20752680
Alignment:
Q  128 gctatataaaggaagactctaaacctaagaagaccactgaagccg 172  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||    
T  20752636 gctatataaaggaagactcttaacctaagaagactactgaagccg 20752680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 24814221 - 24814177
Alignment:
Q  270 ttgtaatttgtgaatcactcgtaagcttttaagcaagagtagatt 314  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||    
T  24814221 ttgtattttgtgaatcactcgtaagcttttaagcaagagtggatt 24814177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 2392597 - 2392689
Alignment:
Q  223 agccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattcta 317  Q
    |||| ||||| |||||  ||||| ||||||||| |||| ||||||||||||||    |||||||||| ||||||| |||||  ||||||||||||    
T  2392597 agcctctcttctatcacgttgatactagagttggactgttagttgagttgtaaaccctgaatcactcataagcttgtaagc--gagtagattcta 2392689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 19387226 - 19387169
Alignment:
Q  217 tttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgta 274  Q
    |||||||||||||||||||||| ||||| ||| ||| || |||  |||||||||||||    
T  19387226 tttgtgagccactcttgtatcaccttgacgcttgagctggacttttagttgagttgta 19387169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 23174773 - 23174822
Alignment:
Q  270 ttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattctatt 319  Q
    |||| |||||||  |||||||||||||||||||||||||| |||| ||||    
T  23174773 ttgttatttgtgtttcactcgtaagcttttaagcaagagtggattttatt 23174822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 28 - 322
Target Start/End: Complemental strand, 24285447 - 24285157
Alignment:
Q  28 aggaaataatatatttgcttttagaatattgtgttgaagaccatattggatcagttgcgtgtttaactcgaattgtccatcaagcccatgctattcccag 127  Q
    |||||| | ||||||||||||| ||||| ||||||||||||  | ||||||||| ||  |||||||| ||| |||   || |||||| |||| |  ||||    
T  24285447 aggaaacactatatttgcttttggaataatgtgttgaagacagt-ttggatcagctgattgtttaacccgagttgcttattaagcccgtgcttt--ccag 24285351  T
Q  128 gctatataaaggaagactctaaacctaagaagaccactgaagccgcaattctgaaagtatcgattagggttttagtatgtccatttttgtttgtgagcca 227  Q
    |||||   ||||||||| |||||||| |||| || ||||||||||||||| | ||||| || || ||||||||||| ||||||||||| |||||||| ||    
T  24285350 gctatgctaaggaagacactaaacctgagaa-actactgaagccgcaattgtcaaagtgtctatcagggttttagtctgtccatttttctttgtgaggca 24285252  T
Q  228 ctcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattctatttct 322  Q
    |||||||| || ||||||| |||||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||| |||||    
T  24285251 ctcttgtaacaccttgatgttagagttggattgatagttgagttgtaaattgtgaatcacccgtaagcttttaagcaatagttgattctgtttct 24285157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 28 - 331
Target Start/End: Original strand, 4649931 - 4650234
Alignment:
Q  28 aggaaataatatatttgcttttagaatattgtgttgaagaccatattggatcagttgcgtgtttaactcgaattgtccatcaagcccatgctattcccag 127  Q
    |||||| ||||||| |||||  ||||||||||| |||||||| ||||||||||| || ||||||| | ||   ||  |||||||| |||  | |   |||    
T  4649931 aggaaacaatatatatgcttccagaatattgtgctgaagaccgtattggatcagctgtgtgtttagcccggtctgctcatcaagctcattttgtattcag 4650030  T
Q  128 gctatataaaggaagactctaaacctaagaagaccactgaagccg-caattctgaaagtatcgattagggttttagtatgtccatttttgtttgtgagcc 226  Q
    ||||||||||||||||||| | ||||||||| || |||||||||  || || | ||||  ||  || || ||||||| | || ||| |||||||| ||||    
T  4650031 gctatataaaggaagactcaagacctaagaacactactgaagccatcatttttaaaagagtcatttgggattttagtctttctattgttgtttgtaagcc 4650130  T
Q  227 actcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattctatttcttgga 326  Q
    | | |||||||| |||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| |||    
T  4650131 aatattgtatcaccttgatgctagagttagactgatagttgagttgtaagttgtgaatcactcgtaagcttttaagcaagagt-gattctgtttctcgga 4650229  T
Q  327 gtgtg 331  Q
    |||||    
T  4650230 gtgtg 4650234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 331
Target Start/End: Original strand, 14911644 - 14911785
Alignment:
Q  191 ttagggttttagtatgtccatttttgtttgtgagccactcttgtatcatc--ttgatgc-tagagttgaactgatagttgagttgtaatttgtgaatcac 287  Q
    ||||||||||||| ||||| || || ||||||||||||||||||||||    ||||||| |||||||| |||| ||||||||||||||  |  |||||||    
T  14911644 ttagggttttagtttgtcc-ttgttatttgtgagccactcttgtatcacgcgttgatgcatagagttggactg-tagttgagttgtaaactcagaatcac 14911741  T
Q  288 tcgtaagcttttaagcaagagtagattctatttcttggagtgtg 331  Q
    ||  |||||| ||||||||||| |||||| | ||| ||||||||    
T  14911742 tcaaaagcttgtaagcaagagttgattctttgtctaggagtgtg 14911785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 18838283 - 18838339
Alignment:
Q  191 ttagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgc 247  Q
    ||||||||||||| ||| | || || ||||||||||||||||||||||  |||||||    
T  18838283 ttagggttttagtctgttctttgttatttgtgagccactcttgtatcacgttgatgc 18838339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 24549615 - 24549559
Alignment:
Q  191 ttagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgc 247  Q
    ||||| ||||||||||| | || || |||||||| |||||||||||||| |||||||    
T  24549615 ttaggattttagtatgttctttgttatttgtgagtcactcttgtatcatgttgatgc 24549559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 51110687 - 51110631
Alignment:
Q  191 ttagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgc 247  Q
    ||||||||||||| ||| | || ||  |||||||||||||||||||||| |||||||    
T  51110687 ttagggttttagtttgttctttgttacttgtgagccactcttgtatcatgttgatgc 51110631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 129 - 305
Target Start/End: Complemental strand, 27599063 - 27598887
Alignment:
Q  129 ctatataaaggaagactctaaacctaagaagaccactgaagccgcaattctgaaagtatcgattagggttttagtatgtccatttttgtttgtgagccac 228  Q
    |||||||||||||| |||||||||||||| ||||| |||||| |||||| | ||||| || ||||| |||||||| |||||||| ||||||||||| |||    
T  27599063 ctatataaaggaagtctctaaacctaagatgaccattgaagctgcaattgtcaaagtgtctattagagttttagtttgtccattgttgtttgtgagtcac 27598964  T
Q  229 tcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaa 305  Q
    |||| ||||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||| |||||||||| ||||    
T  27598963 tcttatatcaccttgatgctagagttggactaatagttgagttgtaagttgtgaatcactcataagcttttatgcaa 27598887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 191 - 331
Target Start/End: Original strand, 19006332 - 19006472
Alignment:
Q  191 ttagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcg 290  Q
    |||||||||||||||||||||| ||||||| ||||||||| ||||||| ||||||||| ||||||||||  ||  |||||||||| |||||||||||||     
T  19006332 ttagggttttagtatgtccattgttgtttgcgagccactcatgtatcaccttgatgcttgagttgaacttgtaaatgagttgtaagttgtgaatcactca 19006431  T
Q  291 taagcttttaagcaagagtagattctatttcttggagtgtg 331  Q
    |||||||||||||||||||  ||||| ||||| | ||||||    
T  19006432 taagcttttaagcaagagtgaattctgtttctcgaagtgtg 19006472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 314
Target Start/End: Complemental strand, 15117163 - 15117042
Alignment:
Q  191 ttagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgctagagttgaactga-tagttgagttgtaatttgtgaatcactc 289  Q
    ||||||||||||| ||||| | |||  |||| |||||||||||||||  ||||||  ||||| || |||   |||| ||||||||  || ||||||||||    
T  15117163 ttagggttttagtctgtccttattt--ttgtcagccactcttgtatccccttgatattagagctggactatgtagtagagttgtatctt-tgaatcactc 15117067  T
Q  290 gtaagcttttaagcaagagtagatt 314  Q
    || ||||||||||||||||||||||    
T  15117066 gtgagcttttaagcaagagtagatt 15117042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 327
Target Start/End: Complemental strand, 19663956 - 19663849
Alignment:
Q  219 tgtgagccactcttgtatcatcttgatgc-tagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattcta 317  Q
    ||||||||||| ||||||||  ||||||| |||||||| ||| ||| |||||||||||  | |||||||||   |||||| |||||||||||  |||||     
T  19663956 tgtgagccactattgtatcacgttgatgcatagagttggact-ataattgagttgtaaactctgaatcactta-aagcttgtaagcaagagttaattctt 19663859  T
Q  318 tttcttggag 327  Q
    ||||||||||    
T  19663858 tttcttggag 19663849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 191 - 327
Target Start/End: Complemental strand, 6138 - 6002
Alignment:
Q  191 ttagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcg 290  Q
    |||||||||||||||||||||| |||||||||||  ||||  |||||| ||||||||  |||||| |||  ||||| ||||||| ||||||||||||||     
T  6138 ttagggttttagtatgtccattgttgtttgtgagtgactcacgtatcaccttgatgcctgagttggacttttagttaagttgtattttgtgaatcactca 6039  T
Q  291 taagcttttaagcaagagtagattctatttcttggag 327  Q
    |||||||||||||||  || |||||||||||| ||||    
T  6038 taagcttttaagcaatggtggattctatttctcggag 6002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 217 - 309
Target Start/End: Original strand, 11864935 - 11865027
Alignment:
Q  217 tttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagt 309  Q
    |||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||  | ||||||||||||||||||||||| ||||||    
T  11864935 tttgtgagccactcttgtatcaccttgatgctagagttggactgttagttgagttgtaagctttgaatcactcgtaagcttttaagaaagagt 11865027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 188 - 309
Target Start/End: Complemental strand, 19565205 - 19565085
Alignment:
Q  188 cgattagggttttagtatgtccatttttgtttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcac 287  Q
    |||||||||||||||| | ||| || |||||| | |||||||||||||||| |||||||||| || || |||| ||||||||||||||  | | ||| ||    
T  19565205 cgattagggttttagtctatcc-ttattgttttttagccactcttgtatcagcttgatgctaaagctggactgttagttgagttgtaaactttaaataac 19565107  T
Q  288 tcgtaagcttttaagcaagagt 309  Q
    ||||||||||||||||||||||    
T  19565106 tcgtaagcttttaagcaagagt 19565085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 331
Target Start/End: Original strand, 39668296 - 39668369
Alignment:
Q  257 actgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattctatttcttggagtgtg 331  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||||||||||| |||| | ||||| ||||||||    
T  39668296 actgatagttgaattgta-tttgtgaatcacttgtaagcttttaagcaagagtggattatgtttctcggagtgtg 39668369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 24609045 - 24608948
Alignment:
Q  217 tttgtgagccactcttgtatcatcttgatgctagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagatt 314  Q
    |||||||||| ||||||| |||  ||||| ||||||||| | || ||||||||||||||  | ||| || ||| |||||||||||||| |||||||||    
T  24609045 tttgtgagcccctcttgtgtcacgttgatactagagttggattgttagttgagttgtaagctttgattccctcataagcttttaagcacgagtagatt 24608948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 50908133 - 50908077
Alignment:
Q  275 atttgtgaatcactcgtaagcttttaagcaagagtagattctatttcttggagtgtg 331  Q
    |||||||  |||||||||||||||||||||||||| |||| ||||||| ||||||||    
T  50908133 atttgtgtttcactcgtaagcttttaagcaagagtggattttatttctcggagtgtg 50908077  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 331
Target Start/End: Complemental strand, 12492917 - 12492842
Alignment:
Q  257 actgatagttgagttgtaattt-gtgaatcactcgtaagcttttaagcaagagtagattctatttcttggagtgtg 331  Q
    |||||||||||||||||| ||| ||||||||||  ||||||||||||||||||  |||||| |||||  |||||||    
T  12492917 actgatagttgagttgtatttttgtgaatcacttataagcttttaagcaagagcggattctgtttctcagagtgtg 12492842  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 35510737 - 35510665
Alignment:
Q  105 catcaagcccatgctattcccaggctatataaaggaagactctaaacctaagaagaccactgaagccgcaatt 177  Q
    |||||||| ||||||||||  ||||||||||||||||||||||||| |||||||||| | |||||||||||||    
T  35510737 catcaagctcatgctattctaaggctatataaaggaagactctaaagctaagaagactaatgaagccgcaatt 35510665  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 43901868 - 43901951
Alignment:
Q  231 ttgtatcatcttgatgc-tagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtagatt 314  Q
    |||||||| |||||||| | ||| || |||||||||||||||||| | ||||||||| |||||||||||||||||||||| ||||    
T  43901868 ttgtatcaccttgatgcgttgagctggactgatagttgagttgta-tctgtgaatcaatcgtaagcttttaagcaagagtggatt 43901951  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 5535623 - 5535517
Alignment:
Q  181 aaagtatcgattagggttttagtatgtccatttttgtttgtgagccactcttgtatcatctt-gatgctagagttgaactgatagttgagttgtaatttg 279  Q
    ||||| || ||||||||||||||  |||| || |||||||||||| |||||||||||| ||| ||| |||||| || |||| |||||||||||||| |||    
T  5535623 aaagtgtctattagggttttagtccgtcc-ttgttgtttgtgagcgactcttgtatcacctttgatactagagctggactgttagttgagttgtaagttg 5535525  T
Q  280 tgaatcac 287  Q
     |||||||    
T  5535524 cgaatcac 5535517  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 2165745 - 2165801
Alignment:
Q  219 tgtgagccactcttgtatcatcttgatgc-tagagttgaactgatagttgagttgta 274  Q
    |||||||||||||||||||| |||||||| | ||| || ||||||||||||||||||    
T  2165745 tgtgagccactcttgtatcaccttgatgcattgagctggactgatagttgagttgta 2165801  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 311
Target Start/End: Original strand, 19583732 - 19583822
Alignment:
Q  221 tgagccactcttgtatcatcttgatgc-tagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagtag 311  Q
    |||||||||||||||||| |||||  | | |||||||| || ||||| ||||||| |||||||| | |||  ||||||||||||||||||||    
T  19583732 tgagccactcttgtatcaccttgacacattgagttgaattgttagtttagttgta-tttgtgaaccgctctaaagcttttaagcaagagtag 19583822  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 289
Target Start/End: Original strand, 10082102 - 10082201
Alignment:
Q  191 ttagggttttagtatgtccatttttgtttgtgagccactcttgtatca--tcttgatgc-tagagttgaactgatagttgagttgtaatttgtgaatcac 287  Q
    ||||||||||||| ||||| || || ||||||||||||||||||||||    ||||||| |||||||| |||| ||||||||||||||  | ||||||||    
T  10082102 ttagggttttagtttgtcc-ttgttatttgtgagccactcttgtatcacgcgttgatgcatagagttggactg-tagttgagttgtaaactatgaatcac 10082199  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 27716617 - 27716574
Alignment:
Q  265 ttgagttgtaatttgtgaatcactcgtaagcttttaagcaagagt 309  Q
    |||||||||| | |||||||||||||||| |||||||||||||||    
T  27716617 ttgagttgta-tatgtgaatcactcgtaaacttttaagcaagagt 27716574  T

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Target: scaffold0054 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 305
Target Start/End: Original strand, 8384 - 8561
Alignment:
Q  129 ctatataaaggaagactctaaacctaa-gaagaccactgaagccgcaattctgaaa-gtatcgattagggttttagtatgtccatttttgtttgtgagcc 226  Q
    |||||||||||||||||| |||||||| |||||| ||||||| |||||||  |||| || ||   ||| |||||| | ||| | || || ||||||||||    
T  8384 ctatataaaggaagactc-aaacctaaagaagactactgaagtcgcaattgagaaaagtgtcatctagagttttattttgtactttgttatttgtgagcc 8482  T
Q  227 actcttgtatcatcttgatgc-tagagttgaactgatagttgagttgtaatttgtgaatcactcgtaagcttttaagcaa 305  Q
    ||||||||||   |||||||| | |||||| ||||||||||||||||| |||||||||   |||  ||||||||||||||    
T  8483 actcttgtatacccttgatgcattgagttggactgatagttgagttgt-atttgtgaactgctctaaagcttttaagcaa 8561  T

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Target: scaffold0423 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 13895 - 13834
Alignment:
Q  270 ttgtaatttgtgaatcactcgtaagcttttaagcaagagtagattctatttcttggagtgtg 331  Q
    |||| |||||||||||||||||||| ||||||| |||||| |||| ||||||| ||||||||    
T  13895 ttgttatttgtgaatcactcgtaagattttaaggaagagtggattttatttctcggagtgtg 13834  T

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Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 331
Target Start/End: Original strand, 27560 - 27635
Alignment:
Q  257 actgatagttgagttgtaattt-gtgaatcactcgtaagcttttaagcaagagtagattctatttcttggagtgtg 331  Q
    |||||||||||||||||| ||| ||||||||||  ||||||||||||||||||  |||||| |||||  |||||||    
T  27560 actgatagttgagttgtatttttgtgaatcacttataagcttttaagcaagagcggattctgtttctcagagtgtg 27635  T

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