View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8940_low_48 (Length: 330)

Name: NF8940_low_48
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8940_low_48
NF8940_low_48
[»] chr1 (1 HSPs)
chr1 (24-318)||(50463933-50464227)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 24 - 318
Target Start/End: Complemental strand, 50464227 - 50463933
Alignment:
Q  24 tttgagatttcttaaatctcttaccttgatggtaattatatattttataaaaataaattaaaaatatctaacannnnnnnnaggaagatatgagactgac 123  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||    
T  50464227 tttgagattacttaaatctcttaccttgatggtaattatatattttttaaaaataaattaaaaatatctaacattttttttaggaagatatgagactgac 50464128  T
Q  124 acttctgaaaagagtgctgttacattcagttgttgatgcgtgcattgaataacattgaattttactaacctacaaattaaattcacacatgaaagcacct 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50464127 acttctgaaaagagtgctgttacattcagttgttgatgcgtgcattgaataacattgaattttactaacctacaaattaaattcacacatgaaagcacct 50464028  T
Q  224 accagaccccatttccttgtcatattcttttgcttcatatcacaatcctgtgctttaaataactcatttctcatcaaatttattacaaacacgaa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50464027 accagaccccatttccttgtcatattcttttgcttcatatcacaatcctgtgctttaaataactcatttctcatcaaatttattacaaacacgaa 50463933  T

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