View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8940_low_5 (Length: 895)

Name: NF8940_low_5
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8940_low_5
NF8940_low_5
[»] chr5 (25 HSPs)
chr5 (1-873)||(499713-500580)
chr5 (2-75)||(37526182-37526255)
chr5 (8-63)||(1899180-1899235)
chr5 (2-63)||(37690619-37690680)
chr5 (2-61)||(2880530-2880589)
chr5 (1-63)||(10125700-10125762)
chr5 (1-63)||(17368702-17368764)
chr5 (9-63)||(28413274-28413328)
chr5 (4-61)||(17258868-17258925)
chr5 (2-63)||(37588343-37588404)
chr5 (2-63)||(37611198-37611259)
chr5 (2-63)||(37787928-37787989)
chr5 (9-61)||(22020347-22020399)
chr5 (3-62)||(6593326-6593385)
chr5 (2-61)||(13604832-13604891)
chr5 (3-62)||(16889762-16889821)
chr5 (1-56)||(35963274-35963329)
chr5 (1-63)||(2568684-2568746)
chr5 (1-63)||(7674674-7674736)
chr5 (9-63)||(10272421-10272475)
chr5 (120-154)||(16945110-16945144)
chr5 (2-56)||(37794681-37794735)
chr5 (2-56)||(38728435-38728489)
chr5 (6-63)||(6183470-6183527)
chr5 (1-50)||(11707094-11707143)
[»] chr7 (27 HSPs)
chr7 (484-711)||(25436331-25436558)
chr7 (484-721)||(25484271-25484508)
chr7 (484-721)||(25636512-25636749)
chr7 (484-719)||(25442322-25442557)
chr7 (623-720)||(25478952-25479049)
chr7 (271-354)||(25478588-25478671)
chr7 (1-63)||(25670568-25670630)
chr7 (6-63)||(22551392-22551449)
chr7 (2-59)||(33894657-33894714)
chr7 (2-62)||(44615087-44615147)
chr7 (2-56)||(20553136-20553190)
chr7 (1-63)||(43250681-43250743)
chr7 (9-62)||(4001736-4001789)
chr7 (271-316)||(25636926-25636971)
chr7 (9-62)||(42281504-42281557)
chr7 (2-63)||(46082062-46082123)
chr7 (1-49)||(43219626-43219674)
chr7 (6-53)||(20888381-20888428)
chr7 (273-316)||(25442725-25442768)
chr7 (8-63)||(25596059-25596114)
chr7 (8-51)||(25797013-25797056)
chr7 (1-48)||(43219786-43219833)
chr7 (13-63)||(35267388-35267438)
chr7 (1-50)||(9038151-9038199)
chr7 (9-62)||(12234879-12234932)
chr7 (2-63)||(33645944-33646005)
chr7 (2-51)||(36598339-36598388)
[»] chr2 (34 HSPs)
chr2 (610-721)||(35105988-35106099)
chr2 (610-721)||(35169648-35169759)
chr2 (626-721)||(35177955-35178050)
chr2 (1-63)||(28677641-28677703)
chr2 (1-63)||(40158744-40158806)
chr2 (1-62)||(1647263-1647324)
chr2 (611-708)||(35055076-35055173)
chr2 (629-713)||(35047044-35047128)
chr2 (3-63)||(41817194-41817254)
chr2 (2-61)||(8820275-8820334)
chr2 (1-58)||(787363-787420)
chr2 (644-721)||(35183971-35184048)
chr2 (2-63)||(35378999-35379060)
chr2 (8-56)||(29316764-29316812)
chr2 (9-63)||(27237883-27237937)
chr2 (1-63)||(38809352-38809414)
chr2 (1-55)||(43530093-43530147)
chr2 (2-63)||(43065433-43065494)
chr2 (6-75)||(44438826-44438895)
chr2 (1-57)||(2964791-2964847)
chr2 (3-63)||(12313157-12313217)
chr2 (15-63)||(41144236-41144284)
chr2 (3-50)||(680542-680589)
chr2 (1-56)||(35378514-35378569)
chr2 (9-56)||(41809235-41809282)
chr2 (1-56)||(43717118-43717173)
chr2 (1-56)||(44606092-44606147)
chr2 (1-63)||(8187435-8187497)
chr2 (31-61)||(41032967-41032997)
chr2 (6-67)||(1160728-1160788)
chr2 (1-46)||(5902531-5902576)
chr2 (3-56)||(28039316-28039369)
chr2 (2-55)||(33256774-33256827)
chr2 (1-62)||(45314895-45314956)
[»] chr1 (37 HSPs)
chr1 (1-63)||(35925716-35925778)
chr1 (1-56)||(31118076-31118131)
chr1 (1-67)||(4699597-4699663)
chr1 (5-63)||(12477273-12477331)
chr1 (5-62)||(10199394-10199451)
chr1 (1-61)||(3924652-3924712)
chr1 (2-46)||(38170673-38170717)
chr1 (8-63)||(6292519-6292574)
chr1 (7-50)||(10854772-10854815)
chr1 (1-63)||(4768811-4768873)
chr1 (9-63)||(27140504-27140558)
chr1 (1-63)||(37811878-37811940)
chr1 (1-46)||(38001639-38001684)
chr1 (31-75)||(4025098-4025142)
chr1 (8-60)||(4201927-4201979)
chr1 (1-49)||(4549888-4549936)
chr1 (4-63)||(6102180-6102240)
chr1 (2-62)||(11639399-11639459)
chr1 (2-62)||(25479608-25479668)
chr1 (1-56)||(4576838-4576893)
chr1 (16-63)||(6981518-6981565)
chr1 (13-56)||(12564493-12564536)
chr1 (3-62)||(15437990-15438049)
chr1 (9-60)||(15579511-15579562)
chr1 (9-56)||(28689442-28689489)
chr1 (3-50)||(29635386-29635433)
chr1 (1-56)||(33723364-33723419)
chr1 (9-51)||(3223705-3223747)
chr1 (31-61)||(11893605-11893635)
chr1 (17-63)||(14629964-14630010)
chr1 (9-63)||(26184774-26184828)
chr1 (1-63)||(31517722-31517784)
chr1 (2-67)||(6602276-6602341)
chr1 (1-62)||(12481530-12481591)
chr1 (1-62)||(23902049-23902110)
chr1 (2-63)||(32515424-32515485)
chr1 (3-56)||(34290269-34290322)
[»] chr8 (29 HSPs)
chr8 (7-62)||(41606891-41606946)
chr8 (1-61)||(3254253-3254313)
chr8 (1-61)||(10383913-10383973)
chr8 (15-63)||(25869262-25869310)
chr8 (2-58)||(30191124-30191180)
chr8 (2-56)||(9835883-9835937)
chr8 (10-56)||(13000415-13000461)
chr8 (5-63)||(42215292-42215350)
chr8 (3-61)||(42370345-42370403)
chr8 (1-62)||(2458548-2458609)
chr8 (5-62)||(11188141-11188198)
chr8 (2-63)||(11569440-11569501)
chr8 (1-62)||(12851203-12851264)
chr8 (2-63)||(30918139-30918199)
chr8 (15-75)||(2492950-2493010)
chr8 (3-63)||(7646232-7646292)
chr8 (31-63)||(28769351-28769383)
chr8 (4-56)||(30389132-30389184)
chr8 (2-61)||(6950350-6950409)
chr8 (31-62)||(30277257-30277288)
chr8 (1-55)||(32840967-32841022)
chr8 (136-183)||(37353392-37353439)
chr8 (1-55)||(11376737-11376791)
chr8 (1-63)||(27754430-27754492)
chr8 (2-56)||(30259147-30259201)
chr8 (1-50)||(779043-779092)
chr8 (8-49)||(2594986-2595027)
chr8 (2-63)||(11183571-11183632)
chr8 (14-63)||(20672776-20672825)
[»] chr3 (31 HSPs)
chr3 (1-63)||(23808046-23808108)
chr3 (7-61)||(36101596-36101650)
chr3 (7-61)||(36139906-36139960)
chr3 (1-56)||(21367700-21367756)
chr3 (8-63)||(1125755-1125810)
chr3 (1-56)||(5391912-5391967)
chr3 (9-56)||(5396230-5396277)
chr3 (2-61)||(27290884-27290943)
chr3 (4-62)||(30923883-30923941)
chr3 (2-63)||(14548704-14548765)
chr3 (2-63)||(21574516-21574577)
chr3 (3-56)||(42745071-42745124)
chr3 (16-61)||(45432936-45432981)
chr3 (1-62)||(53952075-53952136)
chr3 (1-49)||(39723222-39723270)
chr3 (1-49)||(45541611-45541659)
chr3 (7-63)||(50952359-50952415)
chr3 (4-63)||(3467373-3467432)
chr3 (1-48)||(39723382-39723429)
chr3 (3-62)||(43115083-43115142)
chr3 (3-50)||(54837018-54837065)
chr3 (3-61)||(9279310-9279368)
chr3 (2-56)||(37273167-37273221)
chr3 (13-63)||(37825148-37825198)
chr3 (2-56)||(39602193-39602247)
chr3 (17-75)||(52412902-52412960)
chr3 (2-51)||(20195016-20195065)
chr3 (13-62)||(24785232-24785281)
chr3 (9-54)||(36200131-36200176)
chr3 (5-58)||(38318991-38319044)
chr3 (1-50)||(41724251-41724300)
[»] chr6 (23 HSPs)
chr6 (3-56)||(33887863-33887916)
chr6 (9-63)||(7785734-7785788)
chr6 (9-63)||(34939770-34939824)
chr6 (2-61)||(7931709-7931768)
chr6 (1-56)||(31624123-31624178)
chr6 (15-61)||(6536975-6537021)
chr6 (1-55)||(33832255-33832309)
chr6 (1-49)||(696642-696690)
chr6 (3-63)||(7945868-7945928)
chr6 (1-48)||(696483-696530)
chr6 (16-63)||(4420669-4420716)
chr6 (2-61)||(28641732-28641791)
chr6 (2-61)||(30863274-30863333)
chr6 (2-56)||(3217173-3217227)
chr6 (5-55)||(5566163-5566213)
chr6 (21-63)||(17241254-17241296)
chr6 (2-52)||(20377903-20377953)
chr6 (17-63)||(27909636-27909682)
chr6 (2-56)||(32171366-32171420)
chr6 (1-55)||(33089540-33089594)
chr6 (2-56)||(33498652-33498706)
chr6 (7-61)||(34403883-34403937)
chr6 (2-63)||(2460134-2460195)
[»] chr4 (24 HSPs)
chr4 (1-62)||(1137739-1137800)
chr4 (18-75)||(7694009-7694066)
chr4 (6-63)||(44249311-44249368)
chr4 (3-58)||(2841657-2841712)
chr4 (3-62)||(24929520-24929579)
chr4 (2-56)||(3176087-3176141)
chr4 (9-63)||(19304952-19305006)
chr4 (1-63)||(20936211-20936273)
chr4 (9-62)||(29467614-29467667)
chr4 (9-53)||(29263406-29263450)
chr4 (13-61)||(35743310-35743358)
chr4 (14-74)||(43824298-43824358)
chr4 (16-55)||(8469374-8469413)
chr4 (1-48)||(23459669-23459716)
chr4 (120-182)||(17823019-17823081)
chr4 (12-58)||(21592999-21593045)
chr4 (7-61)||(23819117-23819171)
chr4 (3-61)||(28300283-28300341)
chr4 (21-63)||(35064881-35064923)
chr4 (1-47)||(37863936-37863982)
chr4 (1-55)||(43886113-43886167)
chr4 (2-63)||(27123335-27123396)
chr4 (1-50)||(39178248-39178297)
chr4 (1-62)||(46110230-46110291)
[»] scaffold0311 (1 HSPs)
scaffold0311 (2-58)||(10600-10656)
[»] scaffold0153 (2 HSPs)
scaffold0153 (17-67)||(6492-6542)
scaffold0153 (17-67)||(13512-13562)


Alignment Details
Target: chr5 (Bit Score: 753; Significance: 0; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 1 - 873
Target Start/End: Original strand, 499713 - 500580
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctccgggacaacttatcaatttgactctatcttattttttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  499713 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctccgggacaaattatcaatttgactctatcttattttttg 499812  T
Q  101 ttataggaactgttcgtagtaagcacttatatatgataagcttttatgctataagttgcaaatcaagttgtttctacaaacaggatgaaattaagtagca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  499813 ttataggaactgttcgtagtaagcacttatatatgataagcttttatgctataagttgcaaatcaagttgtttctacaaacaggatgaaattaagtagca 499912  T
Q  201 aaattattcccacaaaaccttaattaaaaagacatttgaaaatgatataaattacttgttggcttatgacttatacttacttattcctgacatcccaacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  499913 aaattattcccacaaaaccttaattaaaaagacatttgaaaatgatataaattacttgttggcttgtgacttatacttacttattcctgacatcccaacc 500012  T
Q  301 agatgatccagccaaacaggtcacagctctcttccagcaatcaaccttgtgtggctagtgtctggatttctcgttgtataaagcaaaggcatcctgataa 400  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| ||| | ||| || ||||||| ||| |||||||    
T  500013 agatgatccagccaaacaggtcatagctctcttccagcaatcaaccttgtgtggctcgtgtttggatatcttgctgtgtacagcaaagacattctgataa 500112  T
Q  401 aaacctttctgttttcgtacatcagacggagcaacatcatagaaaacagtttgtttcaaatttaaccggcaatcagcaattgtagccatttcatccaaac 500  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||    
T  500113 acacctttctgttttcgcacatcagacggagcaacatcatagaaaacagtgtgattcaaatttaactggcaatcagcaattgtagccatttcatccaaac 500212  T
Q  501 accatgtggatgaagcataatcttttgagaaaataataatagaaacacgtgattgtcgaattgcgcgaagaagttgagttgaaatagaacgacctttgtt 600  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  500213 accatgttgatgaagcataatcttttgagaaaataataatagaaacacgtgattgtcgaattgcatgaagaagttgagttgaaatagaatgacctttgtt 500312  T
Q  601 gagctgtgcatcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactg 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  500313 gagctgtgcatcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcaacaaaagtgttgcgtgtgtcggaacctctgaaactg 500412  T
Q  701 ataaacacatcatatctatagattagctttggatgctgctattagaagaagaactacaacttgacagatcccaaaaccgtcgcttaggcattgcacctat 800  Q
    ||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  500413 ataaacacatcatatcta-----tagctttggatgctgctattagaagaagaactacaacttgacagatcccaaaaccgtcgcttaggcattgcacctat 500507  T
Q  801 ctgctataagatacgaatgaaaatgtttctaactttgaatcaattatagtataaagaaacgatcgtaaaagac 873  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  500508 ctgctataagatacgaacgaaaatgtttctaactttgaatcaattatagtataaagaaacgatcttaaaagac 500580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 37526182 - 37526255
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctccgggacaacttat 75  Q
    |||||||| ||| | ||||||||||||| ||| |||||||||||||||||||||| |||||| | |||||||||    
T  37526182 cttatgaatacaacctatgacatgttaataagctgttttcagcttatttccataagctctccagaacaacttat 37526255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 1899235 - 1899180
Alignment:
Q  8 aaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||| |||||    
T  1899235 aaaacagcttatgacatgtgcataagttgttttcagcttatttccataaattctcc 1899180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 37690619 - 37690680
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||| ||| | ||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  37690619 cttatgaatacaacctatgacatgttaataagctgttttcagcttatttccataagctctcc 37690680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 2880530 - 2880589
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    |||||| |||||||| |||| ||||| | ||| |||||||||||||||||||||||||||    
T  2880530 cttatggaaacagctaatgatatgttcataaggtgttttcagcttatttccataaactct 2880589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10125700 - 10125762
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||| ||||| ||||||||||||| | ||| |||||||||||||||| ||||| ||||||    
T  10125700 acttatgtaaacaacttatgacatgttgataaggtgttttcagcttattttcataagctctcc 10125762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 17368764 - 17368702
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||| ||||||||||||| | | |  ||||||||||||||||||||| ||||||    
T  17368764 acttatgaaaacaacttatgacatgttcatatgcagttttcagcttatttccataacctctcc 17368702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 28413274 - 28413328
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||  ||||| | ||| |||||||||||||||||||||||||||||    
T  28413274 aaacagcttatggaatgttcataagctgttttcagcttatttccataaactctcc 28413328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 17258868 - 17258925
Alignment:
Q  4 tatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    |||||||| ||||||||||||||| | ||| |||||||||||||||| ||||| ||||    
T  17258868 tatgaaaatagcttatgacatgttcataagctgttttcagcttattttcataagctct 17258925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 37588343 - 37588404
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||| ||| | ||||| ||||||| ||| |||||||||||||||||||||| ||||||    
T  37588343 cttatgaatacaacctatgaaatgttaataagctgttttcagcttatttccataagctctcc 37588404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 37611198 - 37611259
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||| ||| ||||||||| | ||| ||||||||| |||||||||||| ||||||    
T  37611198 cttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctcc 37611259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 37787928 - 37787989
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||| ||| ||||||||| | ||| ||||||||| |||||||||||| ||||||    
T  37787928 cttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctcc 37787989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 22020399 - 22020347
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    |||||||||||||||||| || |||||||||||| ||||||| | ||||||||    
T  22020399 aaacagcttatgacatgtcaataagttgttttcaacttattttcgtaaactct 22020347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 6593385 - 6593326
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    ||||||||||||||| |||  |||||||||| | |||||||||||||| ||||| |||||    
T  6593385 ttatgaaaacagcttttgatgtgttaacaagctcttttcagcttattttcataagctctc 6593326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 13604832 - 13604891
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    |||||||||||||||||||||||||  | | |||||||||| ||||||| ||||| ||||    
T  13604832 cttatgaaaacagcttatgacatgtccatacgttgttttcaacttattttcataagctct 13604891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 16889821 - 16889762
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    |||||||||||||||||   ||||  | ||||||||||||| ||||||||||||||||||    
T  16889821 ttatgaaaacagcttatactatgtctataagttgttttcagattatttccataaactctc 16889762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 35963329 - 35963274
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    ||||||| ||| ||| ||||||||||  | ||||||||||||||||||||||||||    
T  35963329 acttatggaaatagcgtatgacatgtccataagttgttttcagcttatttccataa 35963274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 2568746 - 2568684
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||||||||||||||| || | ||||| |||| ||||||||| ||| | ||||||    
T  2568746 acttatgaaaacagcttatgacatattcataagttatttttagcttattttcattagctctcc 2568684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 7674736 - 7674674
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||| ||||| ||||||||||||| | ||| |||||||||||||||| || ||| |||||    
T  7674736 acttatggaaacaacttatgacatgtttataaggtgttttcagcttattttcacaaattctcc 7674674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 10272421 - 10272475
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||| ||||||||||||    |||||||||||||||||||| ||||||||||||    
T  10272421 aaacaacttatgacatgtctgtaagttgttttcagcttattttcataaactctcc 10272475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 16945110 - 16945144
Alignment:
Q  120 taagcacttatatatgataagcttttatgctataa 154  Q
    |||||||||||| ||||||||||||||||||||||    
T  16945110 taagcacttatacatgataagcttttatgctataa 16945144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 37794681 - 37794735
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||||||||||| ||||||||||||| | ||| |||||| |||||||||| ||||    
T  37794681 cttatgaaaacaacttatgacatgttcataagctgttttgagcttatttcgataa 37794735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 38728489 - 38728435
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||||||||| ||||||||||||| |   ||| ||||||||||||||||||||||    
T  38728489 cttatgaaaatagcttatgacatgctcctaagctgttttcagcttatttccataa 38728435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 6183527 - 6183470
Alignment:
Q  6 tgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||| || ||||||  |||| | ||||||||||||||||||||| ||||||    
T  6183527 tgaaaacagctcataacatgtctacaaatagttttcagcttatttccataagctctcc 6183470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 11707143 - 11707094
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttattt 50  Q
    |||||| |||| || |||||||||||| | ||||||||||||||||||||    
T  11707143 acttatcaaaatagattatgacatgtttataagttgttttcagcttattt 11707094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 3e-32; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 484 - 711
Target Start/End: Original strand, 25436331 - 25436558
Alignment:
Q  484 agccatttcatccaaacaccatgtggatgaagcataatcttttgagaaaataataatagaaacacgtgattgtcgaattgcgcgaagaagttgagttgaa 583  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||| |||| |||||  ||||||||||  | |||||||| | ||||    
T  25436331 agccatttcatccaaacaccatgttgatgaagcataatctcttgagaaaacaatgatacaaacccgtgaccgtcgaattgcttgtagaagttggggtgaa 25436430  T
Q  584 atagaacgacctttgttgagctgtgcatcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgt 683  Q
    || |     ||||| | ||||||    |||||||| ||||| ||||||||||||||||  |||||||  | |||||||||| ||||||  ||||| || |    
T  25436431 atggcttctcctttttggagctgcttgtcatccttgaaggtaaaaataccttttctaactagatgagagtggagatgatcaacaaaagaattgcgggtct 25436530  T
Q  684 cggaacctctaaaactgataaacacatc 711  Q
    | ||||||||||||||||| ||||||||    
T  25436531 cagaacctctaaaactgatgaacacatc 25436558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 484 - 721
Target Start/End: Complemental strand, 25484508 - 25484271
Alignment:
Q  484 agccatttcatccaaacaccatgtggatgaagcataatcttttgagaaaataataatagaaacacgtgattgtcgaattgcgcgaagaagttgagttgaa 583  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||||| ||  |||||||  ||||| ||| |||||||  | |||||||| | ||||    
T  25484508 agccatttcatccaaacaccatgttgaagaagcataatctttggagaaaacaacgatagaaatgcgtgactgttgaattgcttgtagaagttggggtgaa 25484409  T
Q  584 atagaacgacctttgttgagctgtgcatcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgt 683  Q
    || |     ||||| |  |||||    |||||||| ||||||||||||||||||||| |||||||||| |||||||| ||| |||| |  || || ||||    
T  25484408 atggcttctcctttctgtagctgcttgtcatccttgaaggtgaaaataccttttctattgagatgagcgtagagatggtcaacaaaggaattacgggtgt 25484309  T
Q  684 cggaacctctaaaactgataaacacatcatatctatag 721  Q
    | |||||||| |||||||| |||||||| |||||||||    
T  25484308 cagaacctctgaaactgatgaacacatcgtatctatag 25484271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 484 - 721
Target Start/End: Complemental strand, 25636749 - 25636512
Alignment:
Q  484 agccatttcatccaaacaccatgtggatgaagcataatcttttgagaaaataataatagaaacacgtgattgtcgaattgcgcgaagaagttgagttgaa 583  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||| | ||| |||||||| || || | |  ||||||  | | ||||||   ||||    
T  25636749 agccatttcatccaaacaccatgttgatgaagcataatctttggagaagacaatgatagaaacccgcgaatctttaattgcctgcaaaagttggagtgaa 25636650  T
Q  584 atagaacgacctttgttgagctgtgcatcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgt 683  Q
    || ||    ||||| |  |||  |   |||||||| |||||  |||||||||||||| ||||||||||||||||||| ||| |||| |||||||| ||||    
T  25636649 atggattcgcctttctgaagcgatttgtcatccttgaaggtcgaaataccttttctagtgagatgagcatagagatggtcaacaaaggtgttgcgggtgt 25636550  T
Q  684 cggaacctctaaaactgataaacacatcatatctatag 721  Q
    | | |||||| ||||||||||| ||||||||| |||||    
T  25636549 caggacctctgaaactgataaatacatcatatttatag 25636512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 484 - 719
Target Start/End: Complemental strand, 25442557 - 25442322
Alignment:
Q  484 agccatttcatccaaacaccatgtggatgaagcataatcttttgagaaaataataatagaaacacgtgattgtcgaattgcgcgaagaagttgagttgaa 583  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||| | ||| |||||||| || || | |  ||||||  | | ||||||   ||||    
T  25442557 agccatttcatccaaacaccatgttgatgaagcataatctttggagaagacaatgatagaaacccgcgaatctttaattgcctgcaaaagttggagtgaa 25442458  T
Q  584 atagaacgacctttgttgagctgtgcatcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgt 683  Q
    || ||    ||||| |  |||  |   |||||||| |||  |||||||||||||||| |||||||| | |||||||| ||| |||| |  ||||| ||||    
T  25442457 atggattcgcctttctgaagcgatttgtcatccttgaagacgaaaataccttttctagtgagatgatcgtagagatggtcaacaaaggaattgcgggtgt 25442358  T
Q  684 cggaacctctaaaactgataaacacatcatatctat 719  Q
    | | ||||||||||||||| |||||||| |||||||    
T  25442357 caggacctctaaaactgatgaacacatcgtatctat 25442322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 623 - 720
Target Start/End: Original strand, 25478952 - 25479049
Alignment:
Q  623 gtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacacatcatatctata 720  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||| || || || |||||   |||||| |||||||||||||| || ||||||||    
T  25478952 gtgaaaataccttttctagtgagatgagcatagagatggtcagcaaaggttttacgggtgtcaatacctctgaaactgataaacacgtcgtatctata 25479049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 271 - 354
Target Start/End: Original strand, 25478588 - 25478671
Alignment:
Q  271 ttatacttacttattcctgacatcccaaccagatgatccagccaaacaggtcacagctctcttccagcaatcaaccttgtgtgg 354  Q
    ||||||||||||||   | ||||||||||||| | |||||||||||||||||| |||||||||||| | ||||||||| |||||    
T  25478588 ttatacttacttatcggtcacatcccaaccagctaatccagccaaacaggtcatagctctcttccacctatcaaccttctgtgg 25478671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 25670568 - 25670630
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||||| || || ||||||    
T  25670568 acttatgaaaacaacttatgacatgttaataaattgttttcagcttattttcacaagctctcc 25670630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 22551392 - 22551449
Alignment:
Q  6 tgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||||||||||||| | | |||||||||||||||||| ||||| ||||||    
T  22551392 tgaaaacagcttatgacatgttcaaatgttgttttcagcttatttacataagctctcc 22551449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 33894714 - 33894657
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaact 59  Q
    |||||||||||||| ||||||||||  | ||||||||||||||||||||| |||||||    
T  33894714 cttatgaaaacagcatatgacatgtccataagttgttttcagcttatttcaataaact 33894657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 44615087 - 44615147
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    |||||||||||| ||||||||||||  ||||| ||||||||  ||||||||||||||||||    
T  44615087 cttatgaaaacaacttatgacatgtccacaagctgttttcacgttatttccataaactctc 44615147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 20553190 - 20553136
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||||| |||||||||| |||||||| | ||||||||||||| ||||||||||||    
T  20553190 cttatggaaacagcttacgacatgttcataagttgttttcagattatttccataa 20553136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 43250681 - 43250743
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||||||||||||||||||   ||||||||||||| |||| | ||||| ||||||    
T  43250681 acttatgaaaacagcttatgacatgttcgtaagttgttttcagtttatattcataagctctcc 43250743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 4001789 - 4001736
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    |||||||||||| ||||| || |||||||||||||| |||||| ||||||||||    
T  4001789 aaacagcttatggcatgtcaataagttgttttcagcatatttctataaactctc 4001736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 25636971 - 25636926
Alignment:
Q  271 ttatacttacttattcctgacatcccaaccagatgatccagccaaa 316  Q
    ||||||||||||||||||||||||||| || | |||||||||||||    
T  25636971 ttatacttacttattcctgacatcccagcctgctgatccagccaaa 25636926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 42281504 - 42281557
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    |||||||||||||||||| || || |||||||||||||||||| |||| |||||    
T  42281504 aaacagcttatgacatgtaaataatttgttttcagcttatttctataagctctc 42281557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 46082123 - 46082062
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||| |||||||||||   | |||||||||||||||||||| ||||| ||||||    
T  46082123 cttatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataagctctcc 46082062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43219626 - 43219674
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatt 49  Q
    |||||| |||||||||||||||||||| | ||| |||||||||||||||    
T  43219626 acttatcaaaacagcttatgacatgttcataagctgttttcagcttatt 43219674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 20888381 - 20888428
Alignment:
Q  6 tgaaaacagcttatgacatgttaacaagttgttttcagcttatttcca 53  Q
    |||||||| |||||| |||||| | |||||||||||||||||||||||    
T  20888381 tgaaaacaacttatgccatgttcataagttgttttcagcttatttcca 20888428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 316
Target Start/End: Complemental strand, 25442768 - 25442725
Alignment:
Q  273 atacttacttattcctgacatcccaaccagatgatccagccaaa 316  Q
    ||||||||| |||||| ||||||||||||| |||||||||||||    
T  25442768 atacttactgattcctaacatcccaaccagctgatccagccaaa 25442725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 25596114 - 25596059
Alignment:
Q  8 aaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||||||| ||||  |||||||||||| ||||||| ||||| ||||||    
T  25596114 aaaacagcttatgacaagttactaagttgttttcaacttattttcataagctctcc 25596059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 25797013 - 25797056
Alignment:
Q  8 aaaacagcttatgacatgttaacaagttgttttcagcttatttc 51  Q
    |||| ||||||||||||||  |||||||||||||||||||||||    
T  25797013 aaaatagcttatgacatgtctacaagttgttttcagcttatttc 25797056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 43219786 - 43219833
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttat 48  Q
    ||||||||||||||||||||||||||| | ||| |||||| |||||||    
T  43219786 acttatgaaaacagcttatgacatgttcataagctgtttttagcttat 43219833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 35267438 - 35267388
Alignment:
Q  13 agcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||||| | | ||||||||||||||||||| |||| ||||||    
T  35267438 agcttatgacatgttcataggttgttttcagcttatttctataagctctcc 35267388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9038199 - 9038151
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttattt 50  Q
    |||||| |||||||||||||||||||| | || |||||||||||||||||    
T  9038199 acttataaaaacagcttatgacatgttcataa-ttgttttcagcttattt 9038151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 12234879 - 12234932
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    ||||| ||||||||||||  | ||| |||||||||||||||||||||| |||||    
T  12234879 aaacaacttatgacatgtctataagctgttttcagcttatttccataagctctc 12234932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 33645944 - 33646005
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||| ||||| ||||||||||||  | |||||||||| || |||||||||||| ||||||    
T  33645944 cttatggaaacaacttatgacatgtctataagttgtttttaggttatttccataagctctcc 33646005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 36598339 - 36598388
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttc 51  Q
    |||||| ||||| ||||||||||||| | ||| |||||||||||||||||    
T  36598339 cttatggaaacatcttatgacatgttcataagctgttttcagcttatttc 36598388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 610 - 721
Target Start/End: Original strand, 35105988 - 35106099
Alignment:
Q  610 atcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacaca 709  Q
    ||||||||| ||||  |||||||| |||||  | ||||||||||| ||||||||  ||||||||||||| ||||| | |||||| ||||||||||||||     
T  35105988 atcatccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcgacaaaagtgttgcgcgtgtctggacctctgaaactgataaacacg 35106087  T
Q  710 tcatatctatag 721  Q
    || |||||||||    
T  35106088 tcgtatctatag 35106099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 610 - 721
Target Start/End: Original strand, 35169648 - 35169759
Alignment:
Q  610 atcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacaca 709  Q
    ||||||||| |||| ||||| ||| |||||| | ||||||||||| ||||||||| |||||||||| || ||||| |  ||||| |||||||||||||||    
T  35169648 atcatccttgaaggcgaaaacaccctttctagttagatgagcataaagatgatcaacaaaagtgttacgggtgtcagcgcctctgaaactgataaacaca 35169747  T
Q  710 tcatatctatag 721  Q
    || ||| |||||    
T  35169748 tcgtatttatag 35169759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 626 - 721
Target Start/End: Original strand, 35177955 - 35178050
Alignment:
Q  626 aaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacacatcatatctatag 721  Q
    ||||||||||||||  | ||||||||||| ||||||||| ||||||||||||| ||||| | |||||| |||||||||||||| || ||| |||||    
T  35177955 aaaataccttttcttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtctggacctctgaaactgataaacacgtcgtatttatag 35178050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 28677641 - 28677703
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||||||||||||||| || | ||||||||||| |||||||||||||| ||||||    
T  28677641 acttatgaaaacagcttatgacattttcataagttgttttcggcttatttccataagctctcc 28677703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 40158806 - 40158744
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||| || ||||| ||||||    
T  40158806 acttatgaaaacagcttatgacatgtttataagttgttttcagcttaattacataagctctcc 40158744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1647324 - 1647263
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    ||||||||||||||||||||||||| | | ||| |||||||||||||||||||||| |||||    
T  1647324 acttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataagctctc 1647263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 611 - 708
Target Start/End: Original strand, 35055076 - 35055173
Alignment:
Q  611 tcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacac 708  Q
    |||||||| ||||  ||||||||||||||  | ||||||||||| ||||||||| ||||| | ||||| ||||| | ||||||||||||||| |||||    
T  35055076 tcatccttgaaggcaaaaataccttttcttgttagatgagcataaagatgatcaacaaaactattgcgagtgtcaggacctctaaaactgatgaacac 35055173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 629 - 713
Target Start/End: Original strand, 35047044 - 35047128
Alignment:
Q  629 ataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacacatcat 713  Q
    ||||||||||| |||||||||  ||||||||||||    ||||||||||| |||||||  ||||| |||||||||||||||||||    
T  35047044 ataccttttctgatgagatgatgatagagatgatcgatgaaagtgttgcgagtgtcggtgcctctgaaactgataaacacatcat 35047128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 41817254 - 41817194
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||| ||||||||||||| | || ||||||||||||||||||||||| ||||||    
T  41817254 ttatgaaaacatcttatgacatgttgataatttgttttcagcttatttccataagctctcc 41817194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 8820275 - 8820334
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    |||||| ||||||||| ||||||||| ||||| |||||||||||||||||||||| ||||    
T  8820275 cttatggaaacagcttctgacatgttcacaagctgttttcagcttatttccataagctct 8820334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 787420 - 787363
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaac 58  Q
    ||||||||||||||||||||||||||  | ||| |||||||||||||| |||||||||    
T  787420 acttatgaaaacagcttatgacatgtccataagctgttttcagcttatctccataaac 787363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 644 - 721
Target Start/End: Original strand, 35183971 - 35184048
Alignment:
Q  644 agatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacacatcatatctatag 721  Q
    ||||||||||  ||||||||| |||||||| |||| ||||| | ||| |  |||||||||||||||||||||||||||    
T  35183971 agatgagcatgaagatgatcaacaaaagtgctgcgggtgtcagcaccacggaaactgataaacacatcatatctatag 35184048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 35378999 - 35379060
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||||| ||||| |||| | |||||||||||||||||||| ||||| ||||||    
T  35378999 cttatgaaaacagctgatgacttgttcataagttgttttcagcttattttcataagctctcc 35379060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 29316764 - 29316812
Alignment:
Q  8 aaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||||||||||||||||||| | ||||| ||||||||||||||||||||    
T  29316764 aaaacagcttatgacatgttcataagttcttttcagcttatttccataa 29316812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 27237883 - 27237937
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||||||||  | ||| |||||| ||||||||||||||||||||||    
T  27237883 aaacagcttatgacatgtacataagctgtttttagcttatttccataaactctcc 27237937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 38809414 - 38809352
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||| ||| |||||||||||||||||| ||  |||||||| ||||||||||||| ||||||    
T  38809414 acttattaaaccagcttatgacatgttaataatctgttttcaacttatttccataagctctcc 38809352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 43530093 - 43530147
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccata 55  Q
    |||||||||||||| |||||||||||| ||||| | |||||| ||||||||||||    
T  43530093 acttatgaaaacagattatgacatgttcacaagctattttcaacttatttccata 43530147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 43065433 - 43065494
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||| ||||||||||||  | || |||||||||||||||||| |||| ||||||    
T  43065433 cttatgaaaacaacttatgacatgtccataaattgttttcagcttatttcaataagctctcc 43065494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 44438826 - 44438895
Alignment:
Q  6 tgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctccgggacaacttat 75  Q
    |||||||||||||||||||||| | ||  ||||||||||||||||||| ||  ||||| ||| |||||||    
T  44438826 tgaaaacagcttatgacatgttcataacctgttttcagcttatttccacaagatctccaggataacttat 44438895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2964791 - 2964847
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaa 57  Q
    |||||||||||||||||||||||||||    || | |||||||||||||||||||||    
T  2964791 acttatgaaaacagcttatgacatgttggttagcttttttcagcttatttccataaa 2964847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 12313157 - 12313217
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||||||||| |||||| | |||||| ||||| ||||||| ||||| ||||||    
T  12313157 ttatgaaaacagcttatgccatgttcataagttgatttcaccttattttcataagctctcc 12313217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 41144284 - 41144236
Alignment:
Q  15 cttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||| || |||||||||| |||||||||||| |||||||||    
T  41144284 cttatgacatgtcaataagttgtttttagcttatttccagaaactctcc 41144236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 680589 - 680542
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttattt 50  Q
    ||||||||||||||||||||||||| | ||  ||||||||||||||||    
T  680589 ttatgaaaacagcttatgacatgtttataaactgttttcagcttattt 680542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 35378514 - 35378569
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||||||||||||||| ||||| |||| | ||||| |||||||||||||| |||||    
T  35378514 acttatgaaaacagctgatgacttgttcataagttattttcagcttattttcataa 35378569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 41809235 - 41809282
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    ||||| ||||||||||||| | |||||||||| |||||||||||||||    
T  41809235 aaacaacttatgacatgttcataagttgtttttagcttatttccataa 41809282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 43717118 - 43717173
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||||||||||||||||| ||||| || | | |||||||||||||||||| |||||    
T  43717118 acttatgaaaacagcttaggacattttcataggttgttttcagcttattttcataa 43717173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 44606092 - 44606147
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    ||||||||||||| ||||||||||||  | ||||||||||||||| |||| |||||    
T  44606092 acttatgaaaacaacttatgacatgtccataagttgttttcagctgattttcataa 44606147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8187435 - 8187497
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||| ||| ||||||| || ||  |||||||||||||| |||||||||||| ||||||    
T  8187435 acttatgaatacaacttatgaaattttcgcaagttgttttcaggttatttccataatctctcc 8187497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 41032967 - 41032997
Alignment:
Q  31 aagttgttttcagcttatttccataaactct 61  Q
    |||||||||||||||||||||||||||||||    
T  41032967 aagttgttttcagcttatttccataaactct 41032997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 1160728 - 1160788
Alignment:
Q  6 tgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctccggga 67  Q
    |||||| |||||| |||||||  | ||||||||||||| |||||||||||| ||||||||||    
T  1160728 tgaaaatagctta-gacatgtctataagttgttttcagtttatttccataagctctccggga 1160788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5902531 - 5902576
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagctt 46  Q
    ||||||||||||||||||||||||||| | ||  ||||||||||||    
T  5902531 acttatgaaaacagcttatgacatgttcataaactgttttcagctt 5902576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 28039316 - 28039369
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||||||||||  ||||||| |||| | ||| ||||||||||||||||||||||    
T  28039316 ttatgaaaacaagttatgacttgttcataagctgttttcagcttatttccataa 28039369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 33256827 - 33256774
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccata 55  Q
    |||||||||||||||||||||||||| | ||  |||| ||||||||||| ||||    
T  33256827 cttatgaaaacagcttatgacatgttcataaactgttctcagcttattttcata 33256774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 45314956 - 45314895
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    ||||||| ||||| |||||||||| || | ||||||||||||| |||||| |||||| ||||    
T  45314956 acttatgtaaacaacttatgacatatttataagttgttttcagtttattttcataaaatctc 45314895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 35925778 - 35925716
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||||||||||||||||| | ||| |||||||| ||||||||||||||||||||    
T  35925778 acttatgaaaacagcttatgacatgttcataagctgttttcaacttatttccataaactctcc 35925716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 31118131 - 31118076
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    ||||||||||||| ||||||||||||| |  |||||||||||||||||||||||||    
T  31118131 acttatgaaaacatcttatgacatgttcatcagttgttttcagcttatttccataa 31118076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 4699597 - 4699663
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctccggga 67  Q
    ||||||||||||| ||||||||||||| | ||| |||||| |||||||||| |||| ||||||||||    
T  4699597 acttatgaaaacaacttatgacatgttcataagctgtttttagcttatttctataagctctccggga 4699663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 12477273 - 12477331
Alignment:
Q  5 atgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||| |||||||||||||||  | ||||||||||||||||||||||||| |||||||    
T  12477273 atgaaagcagcttatgacatgtccataagttgttttcagcttatttccatacactctcc 12477331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 10199394 - 10199451
Alignment:
Q  5 atgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    ||||||| ||||||||||||||| | |||||||||||||||||||| ||||| |||||    
T  10199394 atgaaaatagcttatgacatgttcataagttgttttcagcttattttcataagctctc 10199451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3924712 - 3924652
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    |||||||||||||  |||||| ||||| | ||||||||||| |||||||||||||||||||    
T  3924712 acttatgaaaacaatttatgaaatgtttataagttgttttcggcttatttccataaactct 3924652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 38170673 - 38170717
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagctt 46  Q
    |||||||||||||||||||||||||| | ||||||||||||||||    
T  38170673 cttatgaaaacagcttatgacatgttcataagttgttttcagctt 38170717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 6292574 - 6292519
Alignment:
Q  8 aaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||||||||||| | ||| |||||||||||||||| ||||| ||||||    
T  6292574 aaaacagcttatgacatgttcataagctgttttcagcttattttcataagctctcc 6292519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 10854815 - 10854772
Alignment:
Q  7 gaaaacagcttatgacatgttaacaagttgttttcagcttattt 50  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  10854815 gaaaacagcttatgacatgttcacaagctgttttcagcttattt 10854772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4768811 - 4768873
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||| |||||||||||| |||||||  | || |||||||||||||||||||||||| |||||    
T  4768811 acttacgaaaacagcttacgacatgtccataacttgttttcagcttatttccataaattctcc 4768873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 27140558 - 27140504
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||||||||  | |||||||||||||||||||| ||||| ||||||    
T  27140558 aaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctcc 27140504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 37811940 - 37811878
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||||||||||||||||| | ||  |||||||| ||||||||||| | ||||||    
T  37811940 acttatgaaaacagcttatgacatgttcataaactgttttcaacttatttccattagctctcc 37811878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38001684 - 38001639
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagctt 46  Q
    |||||||||||||||||||||| |||| | ||||||||||||||||    
T  38001684 acttatgaaaacagcttatgacctgttcataagttgttttcagctt 38001639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 4025142 - 4025098
Alignment:
Q  31 aagttgttttcagcttatttccataaactctccgggacaacttat 75  Q
    |||||||||||||||||||||||| |||||||| ||| |||||||    
T  4025142 aagttgttttcagcttatttccattaactctccaggataacttat 4025098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 4201927 - 4201979
Alignment:
Q  8 aaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactc 60  Q
    |||| ||||||||||| ||| | ||||||| ||||||||||||||||||||||    
T  4201927 aaaagagcttatgacaagtttataagttgtgttcagcttatttccataaactc 4201979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4549936 - 4549888
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatt 49  Q
    |||| ||||||||| |||||||||||| | |||||||||||||||||||    
T  4549936 acttctgaaaacagattatgacatgttcataagttgttttcagcttatt 4549888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 6102240 - 6102180
Alignment:
Q  4 tatgaaaacagcttatgacat-gttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||||||||| || ||| | || |||||||||||||||||||||||| |||||    
T  6102240 tatgaaaacagcttatgatattgttcataaattgttttcagcttatttccataaattctcc 6102180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 11639399 - 11639459
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    |||||||||||||||||||||||||  | ||| |||||| ||||||||| ||||| |||||    
T  11639399 cttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagctctc 11639459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 25479668 - 25479608
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    |||||||||| || |||||||||||| |  ||||||||||||||||||| ||||| |||||    
T  25479668 cttatgaaaatagattatgacatgttcattagttgttttcagcttattttcataagctctc 25479608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 4576893 - 4576838
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    ||||||||||| || |||||||||||| | ||||||| |||||||||||| |||||    
T  4576893 acttatgaaaatagtttatgacatgtttataagttgtgttcagcttattttcataa 4576838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 6981565 - 6981518
Alignment:
Q  16 ttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||| ||||| || |||||||||||||| ||||||||||||||||||    
T  6981565 ttatgtcatgtcaataagttgttttcagcatatttccataaactctcc 6981518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 12564493 - 12564536
Alignment:
Q  13 agcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    ||||||||||| || || ||||||||||||||||||||||||||    
T  12564493 agcttatgacaagtcaataagttgttttcagcttatttccataa 12564536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 15438049 - 15437990
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    ||||| ||||| ||||||||||||| | |||||  ||||||||||||||| |||||||||    
T  15438049 ttatggaaacaacttatgacatgttcataagttactttcagcttatttccgtaaactctc 15437990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 15579562 - 15579511
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccataaactc 60  Q
    ||||| ||||||||||||  | |||||||| |||||||||||||||||||||    
T  15579562 aaacaacttatgacatgtccataagttgttctcagcttatttccataaactc 15579511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 28689442 - 28689489
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    ||||||||||||||||||  | |||||||||||||||||||| |||||    
T  28689442 aaacagcttatgacatgtccataagttgttttcagcttattttcataa 28689489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 29635433 - 29635386
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttattt 50  Q
    |||||||||||  |||||||||||| | ||||||||||||||||||||    
T  29635433 ttatgaaaacaagttatgacatgtttataagttgttttcagcttattt 29635386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 33723364 - 33723419
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    ||||||| |||||||| |||||||||| |  || ||||||||||||||||||||||    
T  33723364 acttatggaaacagctcatgacatgttcatgagatgttttcagcttatttccataa 33723419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 3223747 - 3223705
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttc 51  Q
    ||||| ||||||||||||| | |||||||||||||||||||||    
T  3223747 aaacaacttatgacatgtttataagttgttttcagcttatttc 3223705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 11893605 - 11893635
Alignment:
Q  31 aagttgttttcagcttatttccataaactct 61  Q
    |||||||||||||||||||||||||||||||    
T  11893605 aagttgttttcagcttatttccataaactct 11893635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 14629964 - 14630010
Alignment:
Q  17 tatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||| ||||| | ||||||||||||||||||||||||||| |||||    
T  14629964 tatgatatgttcataagttgttttcagcttatttccataaagtctcc 14630010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 26184828 - 26184774
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||||||||  | ||| ||||||||| |||||||||||| ||||||    
T  26184828 aaacagcttatgacatgtccataagctgttttcagattatttccataagctctcc 26184774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 31517722 - 31517784
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||| |||||| || |||||||||| | ||| |||||||||||||||| ||||| ||||||    
T  31517722 acttatcaaaacaactcatgacatgttcataagctgttttcagcttattttcataagctctcc 31517784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 6602276 - 6602341
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctccggga 67  Q
    |||||| ||||||||||||||||||  | |||||||| |||||||||   |||||||||| |||||    
T  6602276 cttatgtaaacagcttatgacatgtctataagttgttatcagcttatgcacataaactctacggga 6602341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 12481591 - 12481530
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    ||||||||||| || |||| |||| |||||||||||||||||  |||||| ||||| |||||    
T  12481591 acttatgaaaatagtttatcacatcttaacaagttgttttcaagttattttcataagctctc 12481530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 23902049 - 23902110
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    ||||||||||| |||||||  |||||  | ||||||||||||||||| |||||||| |||||    
T  23902049 acttatgaaaagagcttatagcatgtgcataagttgttttcagcttacttccataagctctc 23902110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 32515424 - 32515485
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||| ||||||| |||||||||| || |||||||||||| ||||| || |||| ||||||    
T  32515424 cttatggaaacagcgtatgacatgtcaataagttgttttcaacttatatctataagctctcc 32515485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 34290322 - 34290269
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||| |||| |||||||||||| || | |||||||||||||||||||| |||||    
T  34290322 ttattaaaaaagcttatgacatattcataagttgttttcagcttattttcataa 34290269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 41606891 - 41606946
Alignment:
Q  7 gaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||| |||||    
T  41606891 gaaaacagcttatgacatgttcaaaagttgttttcagcttatttccataagctctc 41606946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3254313 - 3254253
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    ||||| ||||||||||||||||||||| | ||| ||||||||||||||||| ||| |||||    
T  3254313 acttaagaaaacagcttatgacatgttcataagctgttttcagcttatttctatacactct 3254253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 10383973 - 10383913
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    |||||||||||||||||||||||| || | ||| ||||| |||||||||||||||| ||||    
T  10383973 acttatgaaaacagcttatgacattttcataagctgtttacagcttatttccataagctct 10383913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 25869262 - 25869310
Alignment:
Q  15 cttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||  | |||||||||||||||||||||||||||||||||    
T  25869262 cttatgacatgtccataagttgttttcagcttatttccataaactctcc 25869310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 30191124 - 30191180
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaac 58  Q
    |||||| ||||| ||||||||||||| | || |||||||||||||||||||||||||    
T  30191124 cttatggaaacaacttatgacatgttcaaaacttgttttcagcttatttccataaac 30191180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 9835883 - 9835937
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||||| ||||||||||||||||||| | ||| |||||||| |||||||||||||    
T  9835883 cttatgtaaacagcttatgacatgttcataagctgttttcatcttatttccataa 9835937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 13000415 - 13000461
Alignment:
Q  10 aacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||||    
T  13000415 aacaacttatgacatgtccacaagttgttttcagcttatttccataa 13000461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 42215292 - 42215350
Alignment:
Q  5 atgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||||||||| |||| | ||| |||||||||||||||| ||||| ||||||    
T  42215292 atgaaaacagcttatgacttgttcataagctgttttcagcttatttacataagctctcc 42215350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 42370345 - 42370403
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    ||||||||| ||| ||||||||||  ||||  |||||||||||||||||||||||||||    
T  42370345 ttatgaaaatagcgtatgacatgtctacaaactgttttcagcttatttccataaactct 42370403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2458548 - 2458609
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    ||||||||| |||||||||| |||||| | ||| ||||||||| |||||||||||| |||||    
T  2458548 acttatgaagacagcttatggcatgttcataagctgttttcagtttatttccataagctctc 2458609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 11188141 - 11188198
Alignment:
Q  5 atgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    ||||||||||||||||||||||  | || |||||||||| ||||| ||||||||||||    
T  11188141 atgaaaacagcttatgacatgtctataacttgttttcagtttattaccataaactctc 11188198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 11569440 - 11569501
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||| ||||||||||||||||||  | |||||||||||||||||||| || || ||||||    
T  11569440 cttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctcc 11569501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 12851264 - 12851203
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    ||||||||||||||||||| ||||||| | ||| ||||||| |||||||| ||||| |||||    
T  12851264 acttatgaaaacagcttataacatgttcataagatgttttcggcttattttcataagctctc 12851203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 30918199 - 30918139
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||| ||| |||||| || | |||||||||||||||||||||||||| ||||||    
T  30918199 cttatgaaaacaacttgtgacat-ttcataagttgttttcagcttatttccataagctctcc 30918139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 2493010 - 2492950
Alignment:
Q  15 cttatgacatgttaacaagttgttttcagcttatttccataaactctccgggacaacttat 75  Q
    ||||| ||||||| | ||||||||||  |||||||||||||||| |||| |||||||||||    
T  2493010 cttataacatgttcataagttgttttttgcttatttccataaaccctccaggacaacttat 2492950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 7646292 - 7646232
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||| |||||||||||||| |  || | |||||||||||||||||||| ||||||    
T  7646292 ttatgaaaactgcttatgacatgttgatcagctattttcagcttatttccataagctctcc 7646232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 28769351 - 28769383
Alignment:
Q  31 aagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||||||||||||||||||||||||    
T  28769351 aagttgttttcagcttatttccataaactctcc 28769383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 30389184 - 30389132
Alignment:
Q  4 tatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||||||| |||| |||||||||| | |||||||||||||||||||| |||||    
T  30389184 tatgaaaatagctaatgacatgttcataagttgttttcagcttattttcataa 30389132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 6950409 - 6950350
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    |||||| ||||| | ||||||||||  | |||||||||||||||||||||||||| ||||    
T  6950409 cttatgtaaacaacctatgacatgtcgataagttgttttcagcttatttccataagctct 6950350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 62
Target Start/End: Original strand, 30277257 - 30277288
Alignment:
Q  31 aagttgttttcagcttatttccataaactctc 62  Q
    ||||||||||||||||||||||||||||||||    
T  30277257 aagttgttttcagcttatttccataaactctc 30277288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32840967 - 32841022
Alignment:
Q  1 acttatgaaaacagcttatgacat-gttaacaagttgttttcagcttatttccata 55  Q
    ||||||||||||| |||||||||| ||| | |||||||||||||||||||| ||||    
T  32840967 acttatgaaaacaacttatgacattgttcataagttgttttcagcttattttcata 32841022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 37353392 - 37353439
Alignment:
Q  136 ataagcttttatgctataagttgcaaatcaagttgtttctacaaacag 183  Q
    |||||| ||||||||||||| ||||||||||||||||| | |||||||    
T  37353392 ataagcatttatgctataagctgcaaatcaagttgtttatccaaacag 37353439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 11376791 - 11376737
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccata 55  Q
    ||||||||||| ||||| ||||||||||| |  ||||||||||||||||| ||||    
T  11376791 acttatgaaaatagcttgtgacatgttaatatcttgttttcagcttattttcata 11376737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27754492 - 27754430
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||||| |||||||||| | | ||||||  |||||||||||| ||||| ||||||    
T  27754492 acttatgaaaacagtttatgacatgattataagttgcgttcagcttattttcataagctctcc 27754430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 30259201 - 30259147
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||||| ||||||||||||| ||||  | ||||||||||||| ||||||||||||    
T  30259201 cttatggaaacagcttatgatatgtctataagttgttttcagtttatttccataa 30259147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 779043 - 779092
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttattt 50  Q
    ||||| ||||||| ||||||||||||| | |||||||||||| |||||||    
T  779043 acttacgaaaacaacttatgacatgttcataagttgttttcatcttattt 779092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 2594986 - 2595027
Alignment:
Q  8 aaaacagcttatgacatgttaacaagttgttttcagcttatt 49  Q
    |||||| ||||||||||||| | |||||||||||||||||||    
T  2594986 aaaacaacttatgacatgttcataagttgttttcagcttatt 2595027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 11183632 - 11183571
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||| |||||| ||||||| ||||  | ||| |||||||||||||||||||||| ||||||    
T  11183632 cttataaaaacaacttatgatatgtctataagctgttttcagcttatttccataagctctcc 11183571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 20672825 - 20672776
Alignment:
Q  14 gcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||||| | ||| |||||||||||||||| ||||| ||||||    
T  20672825 gcttatgacatgttcataagctgttttcagcttattttcataagctctcc 20672776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 23808046 - 23808108
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||| |||||||||||||||| |||| ||||||||| ||||||| ||||||||||||    
T  23808046 acttatgaaagcagcttatgacatgttcacaaattgttttcatcttattttcataaactctcc 23808108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 36101650 - 36101596
Alignment:
Q  7 gaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| ||||| ||||    
T  36101650 gaaaacagcttatgacatgttcacaagctgttttcagcttattttcataagctct 36101596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 36139960 - 36139906
Alignment:
Q  7 gaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| ||||| ||||    
T  36139960 gaaaacagcttatgacatgttcacaagctgttttcagcttattttcataagctct 36139906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 21367756 - 21367700
Alignment:
Q  1 acttatgaaaacagcttatgaca-tgttaacaagttgttttcagcttatttccataa 56  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||||||| |||||    
T  21367756 acttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataa 21367700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 1125755 - 1125810
Alignment:
Q  8 aaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||| |||||| |||||||| |||||||||| |||||||| ||||||    
T  1125755 aaaacagcttatggcatgtttacaagttgctttcagcttacttccataagctctcc 1125810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5391967 - 5391912
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    ||||||||||||||||||||||||||| | ||| |||||||| ||||||| |||||    
T  5391967 acttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataa 5391912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 5396277 - 5396230
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    ||||||||||||||||||||| ||| |||||||||||||||| |||||    
T  5396277 aaacagcttatgacatgttaataaggtgttttcagcttattttcataa 5396230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 27290884 - 27290943
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    ||||||||||||||||||||||||   | ||| |||||||||||||||||||| ||||||    
T  27290884 cttatgaaaacagcttatgacatgcccataagctgttttcagcttatttccatgaactct 27290943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 30923883 - 30923941
Alignment:
Q  4 tatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    |||| ||||||||||||||||||  | ||| ||||||||||||||||| ||||||||||    
T  30923883 tatggaaacagcttatgacatgtctataagctgttttcagcttatttctataaactctc 30923941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 14548704 - 14548765
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||| | |||||||| |||| | | |||||||||||||||||||||| ||||||    
T  14548704 cttatgaaaacaacgtatgacattttaataggctgttttcagcttatttccataagctctcc 14548765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 21574577 - 21574516
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||| ||||||||||||| | ||| || ||| ||||||||||||||| ||||||    
T  21574577 cttatgaaaacaacttatgacatgttcataagctgcttttagcttatttccataagctctcc 21574516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 42745124 - 42745071
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    ||||| ||||| ||||||||||||| | |||||||||||| |||||||||||||    
T  42745124 ttatgtaaacaacttatgacatgttcataagttgttttcatcttatttccataa 42745071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 45432936 - 45432981
Alignment:
Q  16 ttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    |||||||||||| | |||||||||||||||||||||||||| ||||    
T  45432936 ttatgacatgttcataagttgttttcagcttatttccataagctct 45432981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 53952136 - 53952075
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    |||||||||||||||| || ||||||| |  || |||||||||||||||| |||||||||||    
T  53952136 acttatgaaaacagctgataacatgttcatgagctgttttcagcttattttcataaactctc 53952075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39723222 - 39723270
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatt 49  Q
    |||||| |||||||||||||||||||| | ||| |||||||||||||||    
T  39723222 acttatcaaaacagcttatgacatgttcataagctgttttcagcttatt 39723270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45541659 - 45541611
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatt 49  Q
    ||||||||||||||||||||||||||| | ||| ||||||||| |||||    
T  45541659 acttatgaaaacagcttatgacatgttcataagctgttttcaggttatt 45541611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 50952415 - 50952359
Alignment:
Q  7 gaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||||||||||| | ||  |||||| ||||||||||||||| ||||||    
T  50952415 gaaaacagcttatgacatgttcataaactgttttaagcttatttccataagctctcc 50952359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 3467373 - 3467432
Alignment:
Q  4 tatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||||||||||||   | ||||||||| || ||||||||||||| ||||||    
T  3467373 tatgaaaacagcttatgacatggccataagttgtttgcatcttatttccataatctctcc 3467432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39723382 - 39723429
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttat 48  Q
    ||||||||||||||||||||||||||| | ||| |||||| |||||||    
T  39723382 acttatgaaaacagcttatgacatgttcataagctgtttttagcttat 39723429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 43115142 - 43115083
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    ||||| ||||| ||||||||||||  | || ||||||||||||||||||||||| |||||    
T  43115142 ttatggaaacaacttatgacatgtccataacttgttttcagcttatttccataagctctc 43115083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 54837018 - 54837065
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttattt 50  Q
    ||||||||||||||||||||||||| | || |||||||| ||||||||    
T  54837018 ttatgaaaacagcttatgacatgttcataacttgttttccgcttattt 54837065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 9279310 - 9279368
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    ||||| ||||||||||| ||||||  | ||| |||||||||||||||||| ||||||||    
T  9279310 ttatggaaacagcttataacatgtatataagctgttttcagcttatttccttaaactct 9279368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 37273221 - 37273167
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||||| ||||| ||||||||||||  | |||||||||||| |||||||||||||    
T  37273221 cttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataa 37273167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 37825198 - 37825148
Alignment:
Q  13 agcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||||  | ||||||||||||| |||||||||||| ||||||    
T  37825198 agcttatgacatgtccataagttgttttcaggttatttccataagctctcc 37825148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 39602193 - 39602247
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||||||| ||||||||||||||||| | || ||||||||| ||||||| |||||    
T  39602193 cttatgaagacagcttatgacatgttcataaattgttttcaacttattttcataa 39602247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 52412902 - 52412960
Alignment:
Q  17 tatgacatgttaacaagttgttttcagcttatttccataaactctccgggacaacttat 75  Q
    ||||||||||| | ||| |||||||||||||||||||||  |||||  |||||||||||    
T  52412902 tatgacatgtttataagctgttttcagcttatttccatatgctctctaggacaacttat 52412960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 20195016 - 20195065
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttc 51  Q
    ||||||||||||| ||||||||| || | |||||||||||||||| ||||    
T  20195016 cttatgaaaacagtttatgacatattcaaaagttgttttcagcttttttc 20195065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 24785281 - 24785232
Alignment:
Q  13 agcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    ||||||||||||||| | |||||||||| ||||||||| ||||| |||||    
T  24785281 agcttatgacatgttcataagttgtttttagcttatttacataagctctc 24785232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 36200176 - 36200131
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccat 54  Q
    ||||| ||||||||||||  | ||||||||||||||||||||||||    
T  36200176 aaacaacttatgacatgtccataagttgttttcagcttatttccat 36200131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 38319044 - 38318991
Alignment:
Q  5 atgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaac 58  Q
    ||||||||| ||||| ||||||| | ||| | ||||||||||||||||||||||    
T  38319044 atgaaaacaacttataacatgttcataagctattttcagcttatttccataaac 38318991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 41724300 - 41724251
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttattt 50  Q
    ||||||| ||||| ||||||||||||  | ||||||||||||||||||||    
T  41724300 acttatggaaacaacttatgacatgtccataagttgttttcagcttattt 41724251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 33887916 - 33887863
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    ||||||||| ||||||||||||||| |||||||||||||| |||||||||||||    
T  33887916 ttatgaaaatagcttatgacatgttcacaagttgttttcaacttatttccataa 33887863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 7785734 - 7785788
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||||||||  | |||||||||||||||||||||||||| ||||||    
T  7785734 aaacagcttatgacatgtctataagttgttttcagcttatttccataagctctcc 7785788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 34939824 - 34939770
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||||||||  | || ||||||||||||||||||||||||||||||    
T  34939824 aaacagcttatgacatgtccataaattgttttcagcttatttccataaactctcc 34939770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 7931709 - 7931768
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    |||||||||||| |||||||||||||   |||||||||||||||||||||| ||| ||||    
T  7931709 cttatgaaaacaacttatgacatgttcttaagttgttttcagcttatttccgtaagctct 7931768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 31624178 - 31624123
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    ||||||||||||||||||||||||||| | ||| |||||||| ||||||| |||||    
T  31624178 acttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataa 31624123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 6537021 - 6536975
Alignment:
Q  15 cttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    ||||||||||||| | |||||||||||||||||||||||||| ||||    
T  6537021 cttatgacatgttcataagttgttttcagcttatttccataagctct 6536975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 33832255 - 33832309
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccata 55  Q
    ||||||||||||| ||||||||||||| | |||||||||| ||||||||| ||||    
T  33832255 acttatgaaaacaacttatgacatgtttataagttgtttttagcttattttcata 33832309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 696690 - 696642
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatt 49  Q
    |||||| |||||||||||||||||||| | ||| |||||||||||||||    
T  696690 acttatcaaaacagcttatgacatgttcataagctgttttcagcttatt 696642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 7945868 - 7945928
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||| |||||| |||||| |  ||||||||| ||||||||||||||| ||||||    
T  7945868 ttatgaaaacaacttatggcatgtttattagttgttttaagcttatttccataagctctcc 7945928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 696530 - 696483
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttat 48  Q
    ||||||||||||||||||||||||||| | ||| |||||| |||||||    
T  696530 acttatgaaaacagcttatgacatgttcataagctgtttttagcttat 696483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 4420716 - 4420669
Alignment:
Q  16 ttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||| | ||| |||||||||||||||||||||| ||||||    
T  4420716 ttatgacatgttcataagctgttttcagcttatttccataagctctcc 4420669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 28641732 - 28641791
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    |||||||||||||||||| ||||||| | ||| |||||| ||||||||| ||||| ||||    
T  28641732 cttatgaaaacagcttataacatgttcataagctgtttttagcttattttcataagctct 28641791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 30863333 - 30863274
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    |||||||||||| ||||||||||||  | ||||||||||||||||| ||| |||| ||||    
T  30863333 cttatgaaaacaacttatgacatgtacataagttgttttcagcttacttctataagctct 30863274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 3217173 - 3217227
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||||||||||| || |||||| ||  | ||||||||||||||||||||||||||    
T  3217173 cttatgaaaacaactgatgacacgtcgataagttgttttcagcttatttccataa 3217227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 5566163 - 5566213
Alignment:
Q  5 atgaaaacagcttatgacatgttaacaagttgttttcagcttatttccata 55  Q
    ||||||||||||||| ||||||  | |||||||||||| ||||||||||||    
T  5566163 atgaaaacagcttattacatgtccataagttgttttcaacttatttccata 5566213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 17241254 - 17241296
Alignment:
Q  21 acatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||| | |||||||||||| ||||||||||||||||||||    
T  17241254 acatgttcataagttgttttcaacttatttccataaactctcc 17241296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 20377903 - 20377953
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttcc 52  Q
    |||||||||||| ||||||||||||  | ||||||||||| ||||||||||    
T  20377903 cttatgaaaacaacttatgacatgtctataagttgttttcggcttatttcc 20377953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 27909636 - 27909682
Alignment:
Q  17 tatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||  | |||||||||||||||||||||||||| ||||||    
T  27909636 tatgacatgtccataagttgttttcagcttatttccataagctctcc 27909682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 32171366 - 32171420
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||||||||||||||||||||| ||  | ||| | ||||||||||||||||||||    
T  32171366 cttatgaaaacagcttatgacaagtccagaagctattttcagcttatttccataa 32171420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 33089594 - 33089540
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccata 55  Q
    |||||||||||||||||| |||||||| | ||||||||||  |||||||| ||||    
T  33089594 acttatgaaaacagcttaggacatgtttataagttgttttacgcttattttcata 33089540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 33498706 - 33498652
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||||||||||| ||||||||||||  | | ||| ||||||||||||||||||||    
T  33498706 cttatgaaaacaacttatgacatgtctataggttattttcagcttatttccataa 33498652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 34403937 - 34403883
Alignment:
Q  7 gaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    ||||||| ||||||||||||| | ||| |||||||| ||||||||||||| ||||    
T  34403937 gaaaacaacttatgacatgttcataaggtgttttcaccttatttccataagctct 34403883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 2460134 - 2460195
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||| ||||| ||||||||||||    |||||||||||| ||||||||||||| ||||||    
T  2460134 cttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctcc 2460195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1137800 - 1137739
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    ||||||||||||| ||||||||||||| | ||||||||||||| |||||||||||| |||||    
T  1137800 acttatgaaaacatcttatgacatgttcataagttgttttcagtttatttccataagctctc 1137739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 7694009 - 7694066
Alignment:
Q  18 atgacatgttaacaagttgttttcagcttatttccataaactctccgggacaacttat 75  Q
    |||||||||| | ||||||||||||||||||||||||||||||||| ||| |||||||    
T  7694009 atgacatgttcataagttgttttcagcttatttccataaactctccaggataacttat 7694066  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 44249368 - 44249311
Alignment:
Q  6 tgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||||||||||||||||||| | ||||| | |||||||||||| ||||||||||||    
T  44249368 tgaaaacagcttatgacatgttgataagttttcttcagcttattttcataaactctcc 44249311  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 2841712 - 2841657
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaac 58  Q
    |||||||| || |||||||||||| || |||||||||||||||||| |||||||||    
T  2841712 ttatgaaagcaacttatgacatgtcaataagttgttttcagcttatatccataaac 2841657  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 24929579 - 24929520
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    ||||| |||||||||||| |||||| | || ||||||||||||||||||||||| |||||    
T  24929579 ttatggaaacagcttatggcatgttcataaattgttttcagcttatttccataagctctc 24929520  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 3176087 - 3176141
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataa 56  Q
    |||||||||||| |||||| |||||  | ||||||||||||||||||||||||||    
T  3176087 cttatgaaaacatcttatgtcatgtctataagttgttttcagcttatttccataa 3176141  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 19305006 - 19304952
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||||||||  | |||||||||||||||| ||||||| ||||||||    
T  19305006 aaacagcttatgacatgtccataagttgttttcagcttgtttccattaactctcc 19304952  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 20936211 - 20936273
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||||||||| ||||||| ||||| | ||| |||||||| ||||||||||||| ||||||    
T  20936211 acttatgaaaacaacttatgatatgttcataagctgttttcaccttatttccataatctctcc 20936273  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 29467614 - 29467667
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    |||| |||||||||||||  | ||| ||||||||||||||||||||||||||||    
T  29467614 aaacggcttatgacatgtccataagctgttttcagcttatttccataaactctc 29467667  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 29263450 - 29263406
Alignment:
Q  9 aaacagcttatgacatgttaacaagttgttttcagcttatttcca 53  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||    
T  29263450 aaacagcttatgatatgttcataagttgttttcagcttatttcca 29263406  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 35743358 - 35743310
Alignment:
Q  13 agcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    ||||||||||||||| | ||||||||| || ||||||||||||||||||    
T  35743358 agcttatgacatgtttataagttgtttccaacttatttccataaactct 35743310  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 43824358 - 43824298
Alignment:
Q  14 gcttatgacatgttaacaagttgttttcagcttatttccataaactctccgggacaactta 74  Q
    ||||||| |||||| | |||||||||||||||||||||||||| || ||| ||| ||||||    
T  43824358 gcttatggcatgttcataagttgttttcagcttatttccataagctttccaggataactta 43824298  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 8469374 - 8469413
Alignment:
Q  16 ttatgacatgttaacaagttgttttcagcttatttccata 55  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  8469374 ttatgacatgttcataagttgttttcagcttatttccata 8469413  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23459716 - 23459669
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttat 48  Q
    ||||||||||| ||||||||||||||||| ||||| |||||| |||||    
T  23459716 acttatgaaaaaagcttatgacatgttaataagttattttcaacttat 23459669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 17823081 - 17823019
Alignment:
Q  120 taagcacttatatatgataagcttttatgctataagttgcaaatcaagttgtttctacaaaca 182  Q
    ||||||||||||||||||||||  ||||||||| || ||||||| ||| ||||| | ||||||    
T  17823081 taagcacttatatatgataagcccttatgctatgagctgcaaattaagctgtttatccaaaca 17823019  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 21592999 - 21593045
Alignment:
Q  12 cagcttatgacatgttaacaagttgttttcagcttatttccataaac 58  Q
    |||||||||||||||| | ||| || |||||||||||||||||||||    
T  21592999 cagcttatgacatgtttataagctgctttcagcttatttccataaac 21593045  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 23819171 - 23819117
Alignment:
Q  7 gaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    ||||||||||||||||||||  | |||||||||||| |||||||| |||| ||||    
T  23819171 gaaaacagcttatgacatgtccataagttgttttcatcttatttctataagctct 23819117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 28300283 - 28300341
Alignment:
Q  3 ttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 61  Q
    ||||||||||||| |||||||||||   |||||||||||| ||||||| ||||| ||||    
T  28300283 ttatgaaaacagcctatgacatgttcttaagttgttttcaacttattttcataagctct 28300341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 35064923 - 35064881
Alignment:
Q  21 acatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    ||||||| | || ||||||||||||||||||||||||||||||    
T  35064923 acatgtttataaattgttttcagcttatttccataaactctcc 35064881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37863936 - 37863982
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagctta 47  Q
    ||||||||||||||||||||||| ||| | |||||||||||| ||||    
T  37863936 acttatgaaaacagcttatgacacgttcataagttgttttcacctta 37863982  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 43886113 - 43886167
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccata 55  Q
    |||||||||||||||||||| ||| || | ||| | |||||||||||||||||||    
T  43886113 acttatgaaaacagcttatggcattttcataagctattttcagcttatttccata 43886167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 27123335 - 27123396
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctcc 63  Q
    |||||| ||||| ||||||||||||    |||||||||||| ||||||||||||| ||||||    
T  27123335 cttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctcc 27123396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39178248 - 39178297
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttattt 50  Q
    |||||||||||| |||||||||| ||||| ||| |||||||| |||||||    
T  39178248 acttatgaaaaccgcttatgacacgttaataagatgttttcaacttattt 39178297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 46110291 - 46110230
Alignment:
Q  1 acttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 62  Q
    ||||||||||||| ||||||| ||  | | ||||||||||||||||||||| |||| |||||    
T  46110291 acttatgaaaacaacttatgatatactcataagttgttttcagcttatttctataagctctc 46110230  T

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Target: scaffold0311 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 10600 - 10656
Alignment:
Q  2 cttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaac 58  Q
    |||||| ||||| || |||||||||  | ||||||||||||||||||||||||||||    
T  10600 cttatgtaaacaactaatgacatgtccataagttgttttcagcttatttccataaac 10656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 6492 - 6542
Alignment:
Q  17 tatgacatgttaacaagttgttttcagcttatttccataaactctccggga 67  Q
    ||||||||||  | ||||||||||||| |||||||||||| ||||||||||    
T  6492 tatgacatgtctataagttgttttcagtttatttccataagctctccggga 6542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 13512 - 13562
Alignment:
Q  17 tatgacatgttaacaagttgttttcagcttatttccataaactctccggga 67  Q
    ||||||||||  | ||||||||||||| |||||||||||| ||||||||||    
T  13512 tatgacatgtctataagttgttttcagtttatttccataagctctccggga 13562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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