View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_low_50 (Length: 320)
Name: NF8940_low_50
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 867104 - 867356
Alignment:
| Q |
1 |
tggggaaattaagattatagtatacatataggaagttgttattttgatttctaaattagtttatgtataaagtaatgttgggtgacatattaagattata |
100 |
Q |
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| T |
867104 |
tggggaaattaagattatagtatacatataagaagttgttattttgatttctaaattagtttatgtttaatgtaatgttgggtgacagattaagattata |
867203 |
T |
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| Q |
101 |
tttgactttatgatttgcaaatagcatttttatttaaaactatgttgtttcacaaacatttatcatatgcgttgtacttac-ggataaacaattttacta |
199 |
Q |
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| T |
867204 |
ttagactttatgatttgcaaataacatttttatttaaaattatgtcgtttcacaaacatttatcatatgcgttgtacttacaggatacacaattttacca |
867303 |
T |
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| Q |
200 |
ctatgatcaaaagcaaacatgcatcaaactgtaattaatagttttgctatcaa |
252 |
Q |
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| T |
867304 |
ctatgatcaaaagcaaacatgcatcaaactgtaattaatagttttggtatcaa |
867356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 307
Target Start/End: Original strand, 867376 - 867411
Alignment:
| Q |
272 |
cgcaaattttgttagaagaaaacaagctagtataat |
307 |
Q |
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| T |
867376 |
cgcaaattttgttagaagaaaacaagctagtataat |
867411 |
T |
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