View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_low_52 (Length: 279)
Name: NF8940_low_52
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 32782588 - 32782341
Alignment:
| Q |
19 |
atatatcctgtgtatctgaacatcttgcaattggtctaacaactggctacttggggagcctaacaactttcagcggctggaatcagaaaatgctcgagct |
118 |
Q |
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| T |
32782588 |
atatatcctgtgtatctgaacatcttgcaattggtctaacaaccggctacttggggagcctaacaactttcagcggctggaatcagaaaatgctcgagct |
32782489 |
T |
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| Q |
119 |
tagtgtcgctggacactggatcttgtcttttcttggctttctaataggtaataagtgcaatttaaagactatgtattaacaagacaaaatagttttgcat |
218 |
Q |
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| T |
32782488 |
tggtgtcgctggacactggatcttgtcttttcttggctttctaataggtaataagtgcaatttaaagactatgtactaacaagacaaaatagttttgcat |
32782389 |
T |
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| Q |
219 |
acatgtttaggtatatgtcacttaaccaaattactttctaaaatatct |
266 |
Q |
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| T |
32782388 |
acatgtttaggtatatgttacttaaccaaattactttctaaaatatct |
32782341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 1034766 - 1034879
Alignment:
| Q |
57 |
acaactggctacttggggagcctaacaactttcagcggctggaatcagaaaatgctcgagcttagtgtcgctggacactggatcttgtcttttcttggct |
156 |
Q |
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| T |
1034766 |
acaactggttacttagggagtctaacaacattcagcggctggaatcagaaaatgcttgaactcagtgttactgggaattggctctttgttgtgcttggct |
1034865 |
T |
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| Q |
157 |
ttctaataggtaat |
170 |
Q |
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| T |
1034866 |
ttctaataggtaat |
1034879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 32778091 - 32777976
Alignment:
| Q |
55 |
taacaactggctacttggggagcctaacaactttcagcggctggaatcagaaaatgctcgagcttagtgtcgctggacactggatcttgtcttttcttgg |
154 |
Q |
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| T |
32778091 |
taacaactggttacttggggagccttacaaccttcagtggttggaatcaaaaaatgcttgaactcagtgcttccggccactgggtcatctcttcacttgg |
32777992 |
T |
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| Q |
155 |
ctttctaataggtaat |
170 |
Q |
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| T |
32777991 |
ctttctaataggtaat |
32777976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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