View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8940_low_54 (Length: 273)

Name: NF8940_low_54
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8940_low_54
NF8940_low_54
[»] chr2 (13 HSPs)
chr2 (88-256)||(11171251-11171421)
chr2 (157-252)||(11145330-11145425)
chr2 (149-251)||(11137032-11137134)
chr2 (157-254)||(11149262-11149359)
chr2 (138-255)||(11177258-11177375)
chr2 (139-254)||(11155645-11155760)
chr2 (135-248)||(11104188-11104301)
chr2 (13-91)||(11171450-11171528)
chr2 (160-255)||(10794016-10794111)
chr2 (135-254)||(11095723-11095842)
chr2 (139-256)||(11191871-11191988)
chr2 (139-254)||(11110177-11110292)
chr2 (134-189)||(11184827-11184882)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 88 - 256
Target Start/End: Complemental strand, 11171421 - 11171251
Alignment:
Q  88 tttgtaaactagaactagaaaaa-tggaaatggaacaaagaagatatg-aacataccagaacagaggaaatttcagcagcaagagcaagaatatcagcac 185  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11171421 tttgcaaactagaactagaaaaaatggaaatggaacaaagaagatatggaacataccagaacagaggaaatttcagcagcaagagcaagaatatcagcac 11171322  T
Q  186 aagaaacagtgttaggacaagcattttccactgctgttttgatttgattcacaacatccaaacctcttatt 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11171321 aagaaacagtgttaggacaagcattttccactgctgttttgatttgattcacaacatctaaacctcttatt 11171251  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 11145425 - 11145330
Alignment:
Q  157 ttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgattcacaacatccaaacctct 252  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  11145425 ttcagcagcaagagcaagaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttgatttgattcacaacatccaaacctct 11145330  T

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Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 11137134 - 11137032
Alignment:
Q  149 gaggaaatttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgattcacaacatccaaac 248  Q
    ||||||||||  |||| ||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11137134 gaggaaatttgtgcagaaagggcaagaatatcagcacaagaaactgtgttaggacaagccttttccactgctgttttgatttgattcacaacatccaaac 11137035  T
Q  249 ctc 251  Q
    |||    
T  11137034 ctc 11137032  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 157 - 254
Target Start/End: Complemental strand, 11149359 - 11149262
Alignment:
Q  157 ttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgattcacaacatccaaacctctta 254  Q
    |||||||| ||| |||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||    
T  11149359 ttcagcagaaagggcaagaatatcagcgcaagaaactgtgttaggacaagccttttccacagctgttttgatttgattcacaacatctaaacctctta 11149262  T

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Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 11177375 - 11177258
Alignment:
Q  138 ataccagaacagaggaaatttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgattcac 237  Q
    |||||||| |||| || |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |     
T  11177375 ataccagatcagaagatatttcagcagaaagggcaagaatatcagcacaagaaacagtgttaggacaagcattttccaccgctgttttgatctggtttat 11177276  T
Q  238 aacatccaaacctcttat 255  Q
     || ||||||||||||||    
T  11177275 cacgtccaaacctcttat 11177258  T

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Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 11155760 - 11155645
Alignment:
Q  139 taccagaacagaggaaatttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgattcaca 238  Q
    |||||||||||||||   || ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |  || |||||||| ||||| |||    
T  11155760 taccagaacagaggatgcttgagcagcaagagcaagaatatcagcacaagaaactgtgttaggacaagcactttctatagcagttttgatctgatttaca 11155661  T
Q  239 acatccaaacctctta 254  Q
    ||||||||||||||||    
T  11155660 acatccaaacctctta 11155645  T

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Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 11104301 - 11104188
Alignment:
Q  135 aacataccagaacagaggaaatttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgatt 234  Q
    |||||||||||| ||| || | |||||| |||| || |||||||||||||||||||||||||||||||||  | | ||| |||||||| ||||||| |||    
T  11104301 aacataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgattttatt 11104202  T
Q  235 cacaacatccaaac 248  Q
    ||||||||||||||    
T  11104201 cacaacatccaaac 11104188  T

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Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 11171528 - 11171450
Alignment:
Q  13 tttcgtgttaaaaacaaagaagaaaatagttcttccaacataacnnnnnnnnatggcaaggattctcaactcatctttg 91  Q
    |||| |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  11171528 tttcatgttaaaaacaaagaagaaaatagttcttccaacataacttttttttatggcaaggattctcaactcatctttg 11171450  T

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Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 255
Target Start/End: Original strand, 10794016 - 10794111
Alignment:
Q  160 agcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgattcacaacatccaaacctcttat 255  Q
    ||||||||| ||||||||||||||||||||||| || ||||| ||||| ||||||||  |||| |||||  |||||||||| | ||||||||||||    
T  10794016 agcagcaagtgcaagaatatcagcacaagaaactgtattagggcaagctttttccacgtctgtcttgatacgattcacaacttgcaaacctcttat 10794111  T

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Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 11095842 - 11095723
Alignment:
Q  135 aacataccagaacagaggaaatttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgatt 234  Q
    |||||||||||||||| |  | || ||| |||| || |||||||||||||||||||||||||   |||||  ||||||| |||||||| |||||||| ||    
T  11095842 aacataccagaacagaagctacttgagctgcaatagtaagaatatcagcacaagaaacagtggctggacattcattttcaactgctgtcttgatttggtt 11095743  T
Q  235 cacaacatccaaacctctta 254  Q
     |||||||||||||| ||||    
T  11095742 tacaacatccaaacccctta 11095723  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 256
Target Start/End: Original strand, 11191871 - 11191988
Alignment:
Q  139 taccagaacagaggaaatttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgattcaca 238  Q
    ||||||||| |||||||  | |||| |||| ||||||||||| |||||||| |||    |||||||||||  ||| | ||| | ||||||||||||||||    
T  11191871 taccagaacggaggaaacattagcaccaagtgcaagaatatctgcacaagacacaacactaggacaagcaagttcgattgcggctttgatttgattcaca 11191970  T
Q  239 acatccaaacctcttatt 256  Q
    | ||||||||||||||||    
T  11191971 atatccaaacctcttatt 11191988  T

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Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 11110292 - 11110177
Alignment:
Q  139 taccagaacagaggaaatttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgattcaca 238  Q
    |||||||||||| || ||| |||  ||||| | |||||||||||||||||||||  | ||||| ||||| |||||||||   || ||||||||||| | |    
T  11110292 taccagaacagaagatattccagacgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgata 11110193  T
Q  239 acatccaaacctctta 254  Q
    |||||||| |||||||    
T  11110192 acatccaatcctctta 11110177  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 11184827 - 11184882
Alignment:
Q  134 gaacataccagaacagaggaaatttcagcagcaagagcaagaatatcagcacaaga 189  Q
    |||||||||||||| |||||||| | |||| |||| ||||||||||||||||||||    
T  11184827 gaacataccagaactgaggaaatgttagcaccaagtgcaagaatatcagcacaaga 11184882  T

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