View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_low_57 (Length: 270)
Name: NF8940_low_57
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_57 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 33896501 - 33896753
Alignment:
| Q |
18 |
ctctatccctcaaaatatctttcccagcaacacaaacaagcaatctcttacaacccaacttccccaaatccggatcattagctgggttaatcaacgggtc |
117 |
Q |
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| T |
33896501 |
ctctatccctcaaaatatctttcccagcaacacaaacaagcaatctcttacaacccaacttccccaaatccggatcattagctgggttaatcaacgggtc |
33896600 |
T |
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| Q |
118 |
atccgatccagtcgtagttggacatgaaaaacgccacaaattatgaatcttttctacaaattcagccatatttgattcagaaccaattagatccacaccc |
217 |
Q |
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| T |
33896601 |
atccgatccagtcgtagttggacatgaaaaacgccacaaattatgaatcttttctacaaattcagccatatttgattcagaaccaattagatccacaccc |
33896700 |
T |
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| Q |
218 |
caaaaataaggatgtatataaacactcccttcaagtttcacaccatctaaatt |
270 |
Q |
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| T |
33896701 |
caaaaataaggatgtatataaacactcccttcaagtttcacaccatctaaatt |
33896753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 33902348 - 33902098
Alignment:
| Q |
20 |
ctatccctcaaaatatctttcccagcaacacaaacaagcaatctcttacaacccaacttccccaaatccggatcattagctgggttaatcaacgggtcat |
119 |
Q |
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|||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33902348 |
ctatccttcaaaatatcttgcccagcaacacaaataagcaatctcttacaacccaacttccccaaatccggatcattagccgggttaatcaacgggtcat |
33902249 |
T |
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| Q |
120 |
ccgatccagtcgtagttggacatgaaaaacgccacaaattatgaatcttttctacaaattcagccatatttga-ttcagaaccaattagatccacacccc |
218 |
Q |
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| T |
33902248 |
ccgatccattcgtagttggacatgcaaaacgccataaattatgaatcttttcaatatattcag-cttgtttcagttctgatccaatccgatccacacccc |
33902150 |
T |
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| Q |
219 |
aaaaataaggatgtatataaacactcccttcaagtttcacaccatctaaatt |
270 |
Q |
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| T |
33902149 |
aaaaataaggatgaatataaaaactcccttcaagttttacaccatccaaatt |
33902098 |
T |
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