View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8940_low_58 (Length: 267)
Name: NF8940_low_58
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_58 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 13888260 - 13888509
Alignment:
| Q |
1 |
agtttcaatcaagcctcaattgaacacgtccaattatcaagcttgggcgcgtgctatgcgtagaggtcttggtggcaagaacaaatatcagtttgtagat |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13888260 |
agtttcaatcaagcctcagttgaacacgtccaattatcaagcttgggcgcgtgctatgcgtagaggtcttggtggcaagaacaaatatcagtttgtagat |
13888359 |
T |
|
| Q |
101 |
ggaacaattcctcctcctacatttgatgatttgaatttttctgcatgggaaagatgcaataatctcattcactcctagaatatgaactctgtttatgata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13888360 |
ggaacaattcctcctcctacatttgatgatttgaatttttctgcatgggaaagatgcaataatctcattcactcctagattatgaactctgtttatgata |
13888459 |
T |
|
| Q |
201 |
atattgcacagagtattattgtgtatattgacaacgtttctgatgtttggaaa |
253 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13888460 |
atattgcacagag---tattgtgtatattgacaacgtttatgatgtttggaaa |
13888509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 11021301 - 11021246
Alignment:
| Q |
10 |
caagcctcaattgaacacgtccaattatcaagcttgggcgcgtgctatgcgtagag |
65 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11021301 |
caagcctccattgaacacgtccaattatcaagcttgggcacgtgctatgcgtagag |
11021246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 15095281 - 15095365
Alignment:
| Q |
2 |
gtttcaatcaagcctcaattgaacacgtccaattatcaagcttgggcgcgtgctatgcgtagaggtcttggtggcaagaacaaat |
86 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
15095281 |
gtttcaatcaagtctcagctgaacacgtccaattatcaagcttgggcacgtgctatgcgcagaggtcttggtggccataacaaat |
15095365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University