View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8940_low_60 (Length: 261)

Name: NF8940_low_60
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8940_low_60
NF8940_low_60
[»] chr5 (1 HSPs)
chr5 (75-247)||(28785879-28786051)
[»] chr8 (2 HSPs)
chr8 (145-202)||(19970931-19970988)
chr8 (145-202)||(21021821-21021878)
[»] chr4 (1 HSPs)
chr4 (145-202)||(45111209-45111266)
[»] chr2 (2 HSPs)
chr2 (145-186)||(8149597-8149638)
chr2 (145-186)||(8154221-8154262)
[»] chr6 (3 HSPs)
chr6 (145-202)||(8615787-8615842)
chr6 (145-202)||(10922362-10922419)
chr6 (142-197)||(10922686-10922741)
[»] chr3 (1 HSPs)
chr3 (145-186)||(53396267-53396308)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 75 - 247
Target Start/End: Original strand, 28785879 - 28786051
Alignment:
Q  75 gtcttagtatcattggattcccaccaagcattttgcttcgataaacatctaatgactttcgaaaaatttatttagattccaataatttcattcttcttat 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28785879 gtcttagtatcattggattcccaccaagcattttgcttcgataaacatctaatgactttcgaaaaatttatttagattccaataatttcattcttcttat 28785978  T
Q  175 ctttgaataacataaaattctcaaattttattttgtgtacaaatttctgattgaaaaggtgaggtagttgatg 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28785979 ctttgaataacataaaattctcaaattttattttgtgtacaaatttctgattgaaaaggtgaggtagttgatg 28786051  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 19970988 - 19970931
Alignment:
Q  145 tttagattccaataatttcattcttcttatctttgaataacataaaattctcaaattt 202  Q
    |||||||||||||||||| || || ||||||||||||||||||| |||||||||||||    
T  19970988 tttagattccaataattttatcctccttatctttgaataacatagaattctcaaattt 19970931  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 21021821 - 21021878
Alignment:
Q  145 tttagattccaataatttcattcttcttatctttgaataacataaaattctcaaattt 202  Q
    |||||||||||||||||| || || ||||||||||||||||||| |||||||||||||    
T  21021821 tttagattccaataattttatcctccttatctttgaataacatagaattctcaaattt 21021878  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 45111209 - 45111266
Alignment:
Q  145 tttagattccaataatttcattcttcttatctttgaataacataaaattctcaaattt 202  Q
    |||||||||||||||||| || || ||||||||||||||||||| |||||||||||||    
T  45111209 tttagattccaataattttatcctccttatctttgaataacatagaattctcaaattt 45111266  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 8149638 - 8149597
Alignment:
Q  145 tttagattccaataatttcattcttcttatctttgaataaca 186  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  8149638 tttagattccaataattttattcttcttatctttgaataaca 8149597  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 8154262 - 8154221
Alignment:
Q  145 tttagattccaataatttcattcttcttatctttgaataaca 186  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  8154262 tttagattccaataattttattcttcttatctttgaataaca 8154221  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 8615787 - 8615842
Alignment:
Q  145 tttagattccaataatttcattcttcttatctttgaataacataaaattctcaaattt 202  Q
    |||| ||||||||||||| ||||| ||||||||||||||||  |||||||||||||||    
T  8615787 tttaaattccaataattttattctccttatctttgaataac--aaaattctcaaattt 8615842  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 10922419 - 10922362
Alignment:
Q  145 tttagattccaataatttcattcttcttatctttgaataacataaaattctcaaattt 202  Q
    ||||||||| |||||||| ||| ||||||||||||| ||| ||| |||||||||||||    
T  10922419 tttagattctaataattttatttttcttatctttgattaaaatataattctcaaattt 10922362  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 10922741 - 10922686
Alignment:
Q  142 ttatttagattccaataatttcattcttcttatctttgaataacataaaattctca 197  Q
    ||||||||||||||||||||| ||||| |||||||  ||||||| || ||||||||    
T  10922741 ttatttagattccaataattttattctccttatctaagaataacgtataattctca 10922686  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 53396267 - 53396308
Alignment:
Q  145 tttagattccaataatttcattcttcttatctttgaataaca 186  Q
    ||||||||||||||||||  ||||||||| ||||||||||||    
T  53396267 tttagattccaataattttcttcttcttaactttgaataaca 53396308  T

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