View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_low_68 (Length: 247)
Name: NF8940_low_68
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 33896813 - 33897051
Alignment:
| Q |
1 |
ctaagaacactttctcaaaatctgcatattgattcaaccattcatcacaaccatttccaccaacatgtgaagcaacccatttgagtgctagccatgaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33896813 |
ctaagaacactttctcaaaatctgcatattgattcaaccattcatcagaaccatttccaccaacatgtgaagcaacccatttgagtgctagccatgaatc |
33896912 |
T |
|
| Q |
101 |
ctcatgagcaatgggaacagggtattccggtgctcttctgtaattaacagagacaccaataacgttagcaagtgaagtaacagagttaaggtagttatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33896913 |
ctcatgagcaatgggaacagggtattccggtgctcttctgtaatgaacagagacaccaataacgttagcaagtgaagtaacagagttaagatagttatgg |
33897012 |
T |
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| Q |
201 |
tagcatggtgagaaaggtgtttcaatgcagaaaccacca |
239 |
Q |
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| T |
33897013 |
tagcatggtgagaaaggtgtttcaatgcagaaaccacca |
33897051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 33902038 - 33901800
Alignment:
| Q |
1 |
ctaagaacactttctcaaaatctgcatattgattcaaccattcatcacaaccatttccaccaacatgtgaagcaacccatttgagtgctagccatgaatc |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33902038 |
ctaagaaaactttctcaaaatctgcatattgattcaaccattcatcagaaccatttccaccaacatgtgaagcaacccatttgagtgcaagccatgaatc |
33901939 |
T |
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| Q |
101 |
ctcatgagcaatgggaacagggtattccggtgctcttctgtaattaacagagacaccaataacgttagcaagtgaagtaacagagttaaggtagttatgg |
200 |
Q |
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|||||| | |||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33901938 |
ttcatgacccgtgggaacaggatgttccggtgctcttctgtaatgaacagagacaccaataacgttagcaagtgaagtaacagagttgaggtagttatgg |
33901839 |
T |
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| Q |
201 |
tagcatggtgagaaaggtgtttcaatgcagaaaccacca |
239 |
Q |
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||| |||||| ||||| ||||||||||||||| ||||| |
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| T |
33901838 |
tagtttggtgaaaaaggagtttcaatgcagaaagcacca |
33901800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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