View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8940_low_9 (Length: 836)
Name: NF8940_low_9
Description: NF8940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8940_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 352 - 826
Target Start/End: Complemental strand, 30234766 - 30234291
Alignment:
| Q |
352 |
tgattcagagaatttctgtatagtggcaaggcaatgttcatcttctaacttcttattatgtgtctcacactccctcttttctgtcttacctcttggccat |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30234766 |
tgattcagagaatttctgtatagtggcaaggcaatgttcatcttctaacttcttattatgtgtctcacactccctcttttctgtcttacctcttggccat |
30234667 |
T |
|
| Q |
452 |
ctttctttacaaatgattacattttacatttattttatttttcttctctcttgcttcatctatgagctaaattgaaatccannnnnnngtcaccaatgaa |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
30234666 |
ctttctttacaaatgattacattttacatttattttatttttcttctctcttgcttcatctatgagctaaattgaaagccatttttttgtcaccaatgaa |
30234567 |
T |
|
| Q |
552 |
gtcagaaatcaagt-gtattcagctaacaagatatgttttaaccaacgaattgttgagtcttaatgctatgtgttaggtctatgtcaatacaataaattc |
650 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30234566 |
gtcagaaatcaagtggtattcagctaacaagatatgttttaaccaacgaattgttgagtcttaatgctatgtgttaggtctatgtcaatacaataaattc |
30234467 |
T |
|
| Q |
651 |
tctcctagatgaatactatgtcattgataatagtggtataataaagaccaggatataagagttatgtttcttttaaagcaagnnnnnnnnnnnnctcatt |
750 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30234466 |
tctcctagatgaatactatgtcattgataatagtggtataataaagaccaggatataagagttatgtttcttttaaagcaagaacaagaaaaaactcatt |
30234367 |
T |
|
| Q |
751 |
taagatgaggaaaagaaaactagaaggaatttaacggatagagcatcatctgttgcaaaatagtgatgtccatctc |
826 |
Q |
| |
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|||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||| | || ||||||| |
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| T |
30234366 |
taagatgaagaaatgaaaactagaaggaatttaatggatagagcatcatctgttgcaaaatagggttggccatctc |
30234291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 30249496 - 30249158
Alignment:
| Q |
19 |
atttagacacttaataatcgtatagtcatctctaacacggttataaccaaatccatgaaaagaaatcatagcgctgcaatcaggtgacacagaatcccta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30249496 |
atttagacacttaataatcgtatagtcatctctaacacggttataaccaaatccatgaaaagaaatcatagcgctg---tcaggtgacacagaatcccta |
30249400 |
T |
|
| Q |
119 |
ggactgggaggaatgacattgacttcatctgttgttggattccacaatacaaatgttttatcgcctttggaaaggcaaagtgttccgttaatagtgctag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30249399 |
ggactgggaggaatgacattgacttcatctgttgttggattccacaatacaaatgttttatcgcctttggaaaggcaaagtgttccgttaatagtgctag |
30249300 |
T |
|
| Q |
219 |
aatacaaaatataaaacatagggtgctccgtttgtagtggagttggcaagtccaattttagtctattttcaaagctctgactagacagtaaatgcaaaat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30249299 |
aatacaaaatataaaacatagggtgctccgtttgtagtggagttggcaagtccaattttagtctattctcaaagctctgactagacagtaaatgcaaaat |
30249200 |
T |
|
| Q |
319 |
gga-----tgctgcgacctttatggacaagctgttgtatgat |
355 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |
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|
| T |
30249199 |
ggacacagtgctgcgacctttatggacaagctgttgtatgat |
30249158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 25627807 - 25627762
Alignment:
| Q |
32 |
ataatcgtatagtcatctctaacacggttataaccaaatccatgaa |
77 |
Q |
| |
|
|||||| |||||||||||||| || ||| ||||||||||||||||| |
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|
| T |
25627807 |
ataatcttatagtcatctctagcatggtcataaccaaatccatgaa |
25627762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 22 - 316
Target Start/End: Complemental strand, 4027531 - 4027234
Alignment:
| Q |
22 |
tagacacttaataatcgtatagtcatctctaacacggttataaccaaatccatgaaaagaaatcatagcgctgcaatcaggtgacacagaatccctagga |
121 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| || ||| |||| |||||||||||| ||| ||||| |
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|
| T |
4027531 |
tagacacctaataatcttatagtcatctctaacacggtcataaccaaatccatgaaaagaaatcaaagtgctccaataaggtgacacagactccatagga |
4027432 |
T |
|
| Q |
122 |
ctgggaggaatgacattgacttcatctgttgttggattccacaatacaaatg---ttttatcgcctttggaaaggcaaagtgttccgttaatagtgctag |
218 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||||||||||||||| || | | ||| | |||||||||||||| ||||||||| ||||||||| |
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|
| T |
4027431 |
ctggaaggaatgacaacgatttcatctgttgttggattccacaatacaagtgtactgtcatctgcattggaaaggcaaagggttccgttattagtgctag |
4027332 |
T |
|
| Q |
219 |
aatacaaaatataaaacatagggtgctccgtttgtagtggagttggcaagtccaattttagtctattttcaaagctctgactagacagtaaatgcaaa |
316 |
Q |
| |
|
|| | ||||||||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4027331 |
aacccctaatataaaagatagggtcctcctgttgaagtggagttggcaagtccaatttaagtctattctcaaagctctgactagacagtaaatgcaaa |
4027234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 4e-74; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 25 - 317
Target Start/End: Complemental strand, 34324952 - 34324657
Alignment:
| Q |
25 |
acacttaataatcgtatagtcatctctaacacggttataaccaaatccatgaaaagaaatcatagcgctgcaatcaggtgacacagaatccctaggactg |
124 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| || ||| |||| |||||||||||| ||| |||||||| |
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|
| T |
34324952 |
acacctaataatcttatagtcatctctaacatggtcataaccaaatccatgaaaagaaatcaaagtgctccaataaggtgacacagactccataggactg |
34324853 |
T |
|
| Q |
125 |
ggaggaatgacattgacttcatctgttgttggattccacaatacaaatg---ttttatcgcctttggaaaggcaaagtgttccgttaatagtgctagaat |
221 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||| || | | ||| | |||||||| ||||| ||||||||| ||||||||||| |
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|
| T |
34324852 |
ggaggaatgacaacgatttcatctgttgttggattccacaatacaagtgtactgtcatctgcattggaaagacaaagggttccgttattagtgctagaac |
34324753 |
T |
|
| Q |
222 |
acaaaatataaaacatagggtgctccgtttgtagtggagttggcaagtccaattttagtctattttcaaagctctgactagacagtaaatgcaaaa |
317 |
Q |
| |
|
| ||||||||| |||| || ||| ||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34324752 |
ccctaatataaaagatagcgtcctcttgttgaagtggagttggcaagtccaatttaagtctattctcaaagctctgactagacagtaaatgcaaaa |
34324657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 30 - 316
Target Start/End: Original strand, 29352911 - 29353200
Alignment:
| Q |
30 |
taataatcgtatagtcatctctaacacggttataaccaaatccatgaaaagaaatcatagcgctgcaatcaggtgacacagaatccctaggactgggagg |
129 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||||||||||||| |||| |||||| || ||| |||| |||||||||||| ||| | ||||||||||| |
|
|
| T |
29352911 |
taataatcttatagtcatctctaacacagtcataaccaaatccataaaaacaaatcaaagagctccaataaggtgacacagactccattggactgggagg |
29353010 |
T |
|
| Q |
130 |
aatgacattgacttcatctgttgttggattccacaatacaaat---gttttatcgcctttggaaaggcaaagtgttccgttaatagtgctagaatacaaa |
226 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||| | | | || || |||||||||||||| ||||||||| ||||||||||| | || |
|
|
| T |
29353011 |
aatgacattgacttcatctattgttggattctacaatacaagtttactatgatttccattggaaaggcaaagggttccgttattagtgctagaaccccaa |
29353110 |
T |
|
| Q |
227 |
atataaaacatagggtgctccgtttgtagtggagttggcaagtccaattttagtctattttcaaagctctgactagacagtaaatgcaaa |
316 |
Q |
| |
|
||||||| | ||||| |||| ||| ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||| |||||| |
|
|
| T |
29353111 |
atataaaggacagggtcctcctgttgaagtggagttggcaagtccaatttgagtctattctcaaagctccgactagacagtaagtgcaaa |
29353200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 352 - 528
Target Start/End: Complemental strand, 31701301 - 31701122
Alignment:
| Q |
352 |
tgattcagagaatttct-gtatagtggcaaggcaatgttcatcttctaacttcttattatgtgtctcac--actccctcttttctgtcttacctcttggc |
448 |
Q |
| |
|
||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||| |
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|
| T |
31701301 |
tgattaagagaatttcttgtacagtggcaaggcaatgttcatcttctaacttctcattatgtgtctaacgtactccctcttttctgtcttacttcttggc |
31701202 |
T |
|
| Q |
449 |
catctttctttacaaatgattacattttacatttattttatttttcttctctcttgcttcatctatgagctaaattgaaa |
528 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
31701201 |
catctttctttacatatgcttatattttacatttattttgtttttcttctctcttgcttcatccatgcgctaaattgaaa |
31701122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 637 - 810
Target Start/End: Complemental strand, 31700743 - 31700573
Alignment:
| Q |
637 |
aatacaataaattctctcctagatgaatactatgtcattgataatagtggtataataaagaccaggatataagagttatgtttcttttaaagcaagnnnn |
736 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31700743 |
aatacaataaattctctcttagatgaatactat--cattgataatagtggtattatgaagaccaggagataagagttatgtttcttttaaagcaag-aaa |
31700647 |
T |
|
| Q |
737 |
nnnnnnnnctcatttaagatgaggaaaagaaaactagaaggaatttaacggatagagcatcatctgttgcaaaa |
810 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||||||||| ||| | ||||| ||||||||||||| |
|
|
| T |
31700646 |
aaaaagatctcatttaagatgaagaaatgaaaagtagaaggaatttaatggacaaagcattatctgttgcaaaa |
31700573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 598 - 697
Target Start/End: Complemental strand, 31682675 - 31682576
Alignment:
| Q |
598 |
gaattgttgagtcttaatgctatgtgttaggtctatgtcaatacaataaattctctcctagatgaatactatgtcattgataatagtggtataataaaga |
697 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| |||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31682675 |
gaattgttgagtcttaatgctgtgtgttaggtttatgtcaacacaagaaattctctcttagatgaatgctatgtcattgataatagtggtataataaaga |
31682576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 30651183 - 30651131
Alignment:
| Q |
25 |
acacttaataatcgtatagtcatctctaacacggttataaccaaatccatgaa |
77 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
30651183 |
acacctaataatcttatagtcatctctaacatggtcataaccaaatccatgaa |
30651131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 31777529 - 31777477
Alignment:
| Q |
25 |
acacttaataatcgtatagtcatctctaacacggttataaccaaatccatgaa |
77 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
31777529 |
acacctaataatcttatagtcatctctaacatggtcataaccaaatccatgaa |
31777477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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