View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8941_high_17 (Length: 326)
Name: NF8941_high_17
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 40182076 - 40181774
Alignment:
| Q |
14 |
aggttagagttcaacattctcaatcgctcagtaaacctaaacctagccgtgtgtgtgccgtttgtctccaaccgattctcactcgcaaactatatataag |
113 |
Q |
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| T |
40182076 |
aggttagagttcaacattctcaatcgctcagtaaacctaaacctagccgtgtgtgtgccgtctgtctccaaccgattctcactcgcaaactatatatatg |
40181977 |
T |
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| Q |
114 |
aagatgtgggtgtcgtttgcagcaagatatggcaggaactacatcacttcttctt------cttcctcctcatcatcatccacacgaagaattcctaacc |
207 |
Q |
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| T |
40181976 |
cagatgtgggtgtcgtttgcagcaagatatggcaggaactacatcacttcttcttcttcttcttcctccttatcatcatccacacgaagaattcctaacc |
40181877 |
T |
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| Q |
208 |
ctaacaaggtcattttctccaactttctaagtcaatcatcatcatcatccacttcatgtaatccctcgtttacatatcgtgacaacgacgacaacgtcat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40181876 |
ctaacaaggtcattttctccaactttctaagtcaatcatcatcatcatccacttcatgtaatccctcgtttacatatcgtgacaacgacgacaacgtcat |
40181777 |
T |
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| Q |
308 |
cac |
310 |
Q |
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||| |
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| T |
40181776 |
cac |
40181774 |
T |
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