View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8941_high_20 (Length: 275)
Name: NF8941_high_20
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_high_20 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0268 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 10195895 - 10196156
Alignment:
| Q |
14 |
cacagaaaataggaaaaacaacataaataaacccccaacacaaaatacccagaagagattcacctgcttatccaaaacagcatctacaatccttttcttc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10195895 |
cacagaaaataggaaaaacaacataaataaacccccaacacaaaatacccagaagaaattcacctgcttatccaaaacagcatctacaatccttttcttc |
10195994 |
T |
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| Q |
114 |
acatcttcaaaatcatattacaacttaattcagaaagggtaaaaatcaattacttaaaaaagataaagataaagtaactgtgaaacaaaattaaggtacc |
213 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10195995 |
acatcttcaaaatcacattacaacttaattcagaaacggtaaaaatcaattatttaaaaaagataaagataaagtaactgtgaaacaaaattaaggtacc |
10196094 |
T |
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| Q |
214 |
aggttgtgaagtaagaacactgaatcgctcaaaaagatgaaaaagctgctccctagttaaca |
275 |
Q |
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| T |
10196095 |
aggttgtgaagtaagaacactgaatcgctcaaaaagatgaaaaagctgctccctagttaaca |
10196156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 275
Target Start/End: Complemental strand, 24185 - 23930
Alignment:
| Q |
14 |
cacagaaaataggaaaaacaacataaataaacccccaacacaaaatacccagaagagattcacctgcttatccaaaacagcatctacaatccttttcttc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24185 |
cacagaaaataggaaaaacaacataaataaacccccaagacaaaatacccagaagaaattcacctgcttatccaaaacagcatctacaatccttttcttc |
24086 |
T |
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| Q |
114 |
acatcttcaaaatcatattacaacttaattcagaaagggtaaaaatcaattacttaaaaaagataaagataaagtaactgtgaaacaaaattaaggtacc |
213 |
Q |
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| T |
24085 |
acatcttcaaaatcatattacaacttaattcagaaagggtaaaaatcaattatttaaaaaagat------aaagtaactgtgaaacaaaattaaggtacc |
23992 |
T |
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| Q |
214 |
aggttgtgaagtaagaacactgaatcgctcaaaaagatgaaaaagctgctccctagttaaca |
275 |
Q |
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| T |
23991 |
aggttgtgaagtaagaacactgaatcgctcaaaaagatgaaaaagctgctccctagttaaca |
23930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 19458713 - 19458445
Alignment:
| Q |
11 |
gagcacagaaaataggaaaaacaacataaataaacccccaacacaaaatacccagaagagattcacctgcttatccaaaacagcatctacaatccttttc |
110 |
Q |
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|||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||| ||||||||||| ||||||||||||||| |||||||||||| |
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| T |
19458713 |
gagcacagaaaataggaagaaca---taaataaacccccaagacaaaatacccaaaagaaattcacctgctcatccaaaacagcatccacaatccttttc |
19458617 |
T |
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| Q |
111 |
ttcacatcttcaa-------aatcatattacaacttaattcagaaagggtaaaaatcaattacttaaaaaagataaagataaagtaactgtgaaacaaaa |
203 |
Q |
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||||||||| | | |||||||||||||||||||||| ||||||||||||||||||| | |||| ||| |||||||||| ||||||||||||||| |
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| T |
19458616 |
ttcacatctaccacacaagaaatcatattacaacttaattcaaaaagggtaaaaatcaattattcaaaatagaaaaagataaagaaactgtgaaacaaaa |
19458517 |
T |
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| Q |
204 |
ttaaggtaccaggttgtgaagtaagaacactgaatcgctcaaaaagatgaaaaagctgctccctagttaaca |
275 |
Q |
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| T |
19458516 |
tatgggtaccaggttgtgaagtaagaacactgaatcgctcaaaaagatgaaaaagctgctccctagttaaca |
19458445 |
T |
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