View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8941_high_23 (Length: 262)
Name: NF8941_high_23
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 41345176 - 41345432
Alignment:
| Q |
1 |
cattccccgcagttgcgcttggagtttcatgttcctgattatgacttgtttgttgaacattgcttgtttcgttcattgacgatggagctgtttctattgg |
100 |
Q |
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| T |
41345176 |
cattccccgcagttgcgcttggagtttcatgttcctgattatgacttgtttgttgaacattgcttgtttcgttcattgatgatggagctgtttctattgg |
41345275 |
T |
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| Q |
101 |
caaactctggtcaggattaatactcgtttccggaacaatggttgctatttcattcactgataatggagttgtttccattaccatattacccatttcggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41345276 |
caaactctggtcaggattaatactcgtttccggaacaatggttgctatttcattcactgataatggagttgtttccattatcatattacccatttcggat |
41345375 |
T |
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| Q |
201 |
cttggtctacgagaagatcgatatcgtggacgacgctgtttttccctctctgcttct |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
41345376 |
cttggtctacgagaagatcgatatcgtggacgacgctgtttttccctttttgcttct |
41345432 |
T |
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