View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8941_high_30 (Length: 219)

Name: NF8941_high_30
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8941_high_30
NF8941_high_30
[»] chr3 (12 HSPs)
chr3 (51-196)||(23036168-23036313)
chr3 (64-196)||(23145918-23146050)
chr3 (64-196)||(23039039-23039171)
chr3 (64-196)||(23148756-23148888)
chr3 (64-186)||(23024280-23024402)
chr3 (51-186)||(23017070-23017205)
chr3 (64-186)||(23140054-23140176)
chr3 (64-196)||(23032712-23032829)
chr3 (64-194)||(22946404-22946534)
chr3 (64-196)||(22971949-22972081)
chr3 (64-139)||(22916741-22916816)
chr3 (64-122)||(22941444-22941502)
[»] chr6 (1 HSPs)
chr6 (51-196)||(21779811-21779956)
[»] scaffold0554 (1 HSPs)
scaffold0554 (51-196)||(6611-6756)
[»] chr1 (3 HSPs)
chr1 (64-196)||(12609903-12610035)
chr1 (64-196)||(15885832-15885964)
chr1 (62-196)||(12636999-12637133)
[»] scaffold0059 (1 HSPs)
scaffold0059 (64-186)||(62161-62283)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 51 - 196
Target Start/End: Complemental strand, 23036313 - 23036168
Alignment:
Q  51 taaggtaacaataaatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgac 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23036313 taaggtaacaataaatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgac 23036214  T
Q  151 tacaaagggagtaattttgagtacattccttttggttccggaagaa 196  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  23036213 tacaaagggagtaactttgagtacattccttttggtgccggaagaa 23036168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 23146050 - 23145918
Alignment:
Q  64 aatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgactacaaagggagta 163  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  23146050 aatgcttgggcagttgcaagagatccaaactactggactgaaccagagaggttttatccagagagattcatcgacagcgatattgactataaagggagta 23145951  T
Q  164 attttgagtacattccttttggttccggaagaa 196  Q
    | ||||||||||||||||||||| | |||||||    
T  23145950 actttgagtacattccttttggtgctggaagaa 23145918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 23039171 - 23039039
Alignment:
Q  64 aatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgactacaaagggagta 163  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| | |||||||| |||||||| ||||| ||||    
T  23039171 aatgcttgggcaattgcaagagatccaaattactggactgagccggagagattttatccagagagattccttgacagcgccattgactataaaggaagta 23039072  T
Q  164 attttgagtacattccttttggttccggaagaa 196  Q
    ||| ||||||||||||||||||| |||||||||    
T  23039071 attatgagtacattccttttggtgccggaagaa 23039039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 23148888 - 23148756
Alignment:
Q  64 aatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgactacaaagggagta 163  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| ||||||||||| || |||| ||||||||| ||||||||||    
T  23148888 aatgcttgggcaattgcaagagattcaaactactggactgaaccagagaggttttatccagagagattcattgaaagcgatattgactataaagggagta 23148789  T
Q  164 attttgagtacattccttttggttccggaagaa 196  Q
    | || |||||||||||||||||| |||||||||    
T  23148788 acttcgagtacattccttttggtgccggaagaa 23148756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 23024402 - 23024280
Alignment:
Q  64 aatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgactacaaagggagta 163  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || | ||||||||| ||||||||||    
T  23024402 aatgcttgggcaattgcaagagatccaaattactggaccgaaccagagaggttttatccagagagattcatcgatagtgatattgactataaagggagta 23024303  T
Q  164 attttgagtacattccttttggt 186  Q
    | |||||||| ||||||||||||    
T  23024302 actttgagtatattccttttggt 23024280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 51 - 186
Target Start/End: Complemental strand, 23017205 - 23017070
Alignment:
Q  51 taaggtaacaataaatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgac 150  Q
    |||||| | ||| |||||||||||||| |||||||||||||| |||||||||||||||||||  |||||||| ||||||||||| |||| || |||||||    
T  23017205 taaggtgataattaatgcttgggcaatcgcaagagatccaaactactggactgaaccagagaagttttatccagagagattcattgacaacggtattgac 23017106  T
Q  151 tacaaagggagtaattttgagtacattccttttggt 186  Q
    || ||||||||||| || || |||||||||||||||    
T  23017105 tataaagggagtaacttcgaatacattccttttggt 23017070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 23140176 - 23140054
Alignment:
Q  64 aatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgactacaaagggagta 163  Q
    ||||| |||||||| || ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |  | | |||||||||| |||||||||     
T  23140176 aatgcatgggcaatcgcgagagatccaaactactggactgaaccagagaaattttatccagagagattcatgggaaacactattgactataaagggagtg 23140077  T
Q  164 attttgagtacattccttttggt 186  Q
    |||||||||||||||||||||||    
T  23140076 attttgagtacattccttttggt 23140054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 23032829 - 23032712
Alignment:
Q  64 aatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgactacaaagggagta 163  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||               ||||||||||||||||||||| ||||| ||||    
T  23032829 aatgcttgggcaattgcaagagatccaaactactggactgaaccagagagatt---------------catcgacagcgctattgactataaaggaagta 23032745  T
Q  164 attttgagtacattccttttggttccggaagaa 196  Q
    |||||||||||||||| |||||| |||||||||    
T  23032744 attttgagtacattccctttggtgccggaagaa 23032712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 22946534 - 22946404
Alignment:
Q  64 aatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgactacaaagggagta 163  Q
    |||||||||||||||| ||| |||||||| || |||||||| ||||| |  |||||||| || ||||| || || ||  || |||| | |||||| |  |    
T  22946534 aatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaacaa 22946435  T
Q  164 attttgagtacattccttttggttccggaag 194  Q
    |||||||||||||||| |||||| |||||||    
T  22946434 attttgagtacattccatttggtgccggaag 22946404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 22972081 - 22971949
Alignment:
Q  64 aatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgactacaaagggagta 163  Q
    |||||||||||||||| ||| |||||||| || |||||||| ||||| |  |||||||| || ||||| || || ||  || |||| | |||||| |  |    
T  22972081 aatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctcttgatttcaaaggaacaa 22971982  T
Q  164 attttgagtacattccttttggttccggaagaa 196  Q
    |||||||||||||||| |||||| | |||||||    
T  22971981 attttgagtacattccatttggtgctggaagaa 22971949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 22916741 - 22916816
Alignment:
Q  64 aatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgaca 139  Q
    ||||||||||| |||| ||||||||||||| | |||  ||| ||||| ||||||||||| || || ||||||||||    
T  22916741 aatgcttgggccattggaagagatccaaataattgggatgatccagaaagattttatcctgaaaggttcatcgaca 22916816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 22941444 - 22941502
Alignment:
Q  64 aatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcc 122  Q
    ||||||||||| |||| ||||||||||||| | |||  ||| |||||||||||||||||    
T  22941444 aatgcttgggccattggaagagatccaaatcattgggatgacccagagagattttatcc 22941502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 51 - 196
Target Start/End: Complemental strand, 21779956 - 21779811
Alignment:
Q  51 taaggtaacaataaatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgac 150  Q
    |||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||| |||||||||||||| |||| |||||||    
T  21779956 taaggtgataatcaatgcttgggcaattgcaagagatccaaactactggactgaaccagagatgttttatccagagagattcatcgatagcgatattgac 21779857  T
Q  151 tacaaagggagtaattttgagtacattccttttggttccggaagaa 196  Q
    |  |||||||||||||||||||||||||| |||||| |||||||||    
T  21779856 tttaaagggagtaattttgagtacattccatttggtgccggaagaa 21779811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 6611 - 6756
Alignment:
Q  51 taaggtaacaataaatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgac 150  Q
    |||||| | ||| ||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||||||  |||||| ||||||||    
T  6611 taaggtgataatcaatgcttgggcaattgcaagagatccaaacttctggactgaaccagagaggttttatccagagagattcactgacagcactattgac 6710  T
Q  151 tacaaagggagtaattttgagtacattccttttggttccggaagaa 196  Q
    || |||||| |||||||||||||||||||||||||| | |||||||    
T  6711 tataaagggggtaattttgagtacattccttttggtgctggaagaa 6756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 12610035 - 12609903
Alignment:
Q  64 aatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgactacaaagggagta 163  Q
    ||||| ||||| |||| |||||||||||| |||||||||||||||||||  |||||||| |||||||||||||  ||| |||||||||||||||||| ||    
T  12610035 aatgcatgggcgattggaagagatccaaagtactggactgaaccagagaagttttatccggagagattcatcggtagctctattgactacaaagggaata 12609936  T
Q  164 attttgagtacattccttttggttccggaagaa 196  Q
    |||||||||||||||| |||||| | |||||||    
T  12609935 attttgagtacattccctttggtgctggaagaa 12609903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 15885832 - 15885964
Alignment:
Q  64 aatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgactacaaagggagta 163  Q
    ||||| ||||| |||| |||||||||||| || ||||||||||||||||| |||||||| ||||||||||| |  ||| |||||||||| ||||||| ||    
T  15885832 aatgcatgggcgattggaagagatccaaagtattggactgaaccagagaggttttatccagagagattcattggtagctctattgactataaagggaata 15885931  T
Q  164 attttgagtacattccttttggttccggaagaa 196  Q
    ||||||||||||||||||||||||| |||||||    
T  15885932 attttgagtacattccttttggttctggaagaa 15885964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 62 - 196
Target Start/End: Complemental strand, 12637133 - 12636999
Alignment:
Q  62 taaatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgactacaaagggag 161  Q
    ||||||| ||| ||||||  ||||||||||| |||||||||||||||||||| ||| |||| ||||||||||| |  ||| |||||||||||||||| |     
T  12637133 taaatgcatggacaattggtagagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaa 12637034  T
Q  162 taattttgagtacattccttttggttccggaagaa 196  Q
    ||||||||||||||||||||||||| | |||||||    
T  12637033 taattttgagtacattccttttggtgcaggaagaa 12636999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 62283 - 62161
Alignment:
Q  64 aatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgactacaaagggagta 163  Q
    ||||| |||||||| | |||||||||||  |||||||| ||||||||||| |||||||| ||||||||||| |  ||  ||||||||||||| |||| ||    
T  62283 aatgcatgggcaatcggaagagatccaaggtactggacggaaccagagaggttttatccagagagattcattggtagttctattgactacaacgggaata 62184  T
Q  164 attttgagtacattccttttggt 186  Q
    |||| ||||||||||||||||||    
T  62183 atttcgagtacattccttttggt 62161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University