View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8941_high_4 (Length: 690)
Name: NF8941_high_4
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 19 - 676
Target Start/End: Complemental strand, 52386560 - 52385910
Alignment:
| Q |
19 |
aagggacctaattaaagatgattttggatataagtatattaaatggtagtagaagataagaaattcttatagcaaccattgcatatgcgtccaataactt |
118 |
Q |
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| T |
52386560 |
aagggacctaattaaagatgattttggatataagtatattaaatgttag---aagataagaaattcttatagcaaccattgcatatgcgtccaataactt |
52386464 |
T |
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| Q |
119 |
ttgatctttcagattggtagcgaagttcctgtcatatatatgattataaaagtatgaatgttgttaacttactgtaaatgaataaatggtaaataaaatc |
218 |
Q |
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| T |
52386463 |
gtgatctttcagattggtagcgaagttcctttcatat----gattataaaagtatgaatgttgttaacttactgtaaatgaataaatggtaaataaaatc |
52386368 |
T |
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| Q |
219 |
aacaatacagagtatggatgttgtcaacatgaaaaatcaaaatcctggtatgatgtctcaagtgaattataagaatatacagtatttcatgtttataatt |
318 |
Q |
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| T |
52386367 |
aacaatacagagtatggatgttgtcaacatgaaaaatcaaaatcctggtatgatgtctcaagtgaattataagaatatacagtatttcatgtttataatt |
52386268 |
T |
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| Q |
319 |
ttgttacagaatcccgttatcctttctaacatctccgcagctgactttgcagccatgacgacgaggtttatcaggattgtcaggatcagaatcacttggt |
418 |
Q |
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| T |
52386267 |
ttgttacagaatcccgttatcctttctaacatctccgcagctgactttgcagccatgacgacgaggtttatcaggattgtcaggatcagaatcacttggt |
52386168 |
T |
|
| Q |
419 |
tccaccagaagtcctctcaggcatcgtcttcgaaccattggttggtaagttaacctctctacccggctaactgttttaacttcagctttgcggttttcca |
518 |
Q |
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| T |
52386167 |
tccaacagaagtcctctcaggcatcgtcttcgaaccattggttggtaagttaacctctctacccggctaactgttttaacttcagcttcgcggttttcca |
52386068 |
T |
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| Q |
519 |
aaccttgtttaacttgaggctcaggcttttcgggaagaatgacatgaacgccggggtctcttccatttattgaaccttgcaccatcaatgaattattcat |
618 |
Q |
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| T |
52386067 |
aaccttgtttaacttgaggctcaggcttttcgggaagaatgacatgaacgccggggtctcttccatttattgaaccttgcaccatcaatgaattattcat |
52385968 |
T |
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| Q |
619 |
actctgtatgttgctgttcacatatgcctttcccgcttcatctttctcttcttcctct |
676 |
Q |
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| T |
52385967 |
actctgtatgttgctgttcacatatgcctttcccgcttcatctttctcttcttcctct |
52385910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 563 - 645
Target Start/End: Complemental strand, 7087895 - 7087813
Alignment:
| Q |
563 |
tgaacgccggggtctcttccatttattgaaccttgcaccatcaatgaattattcatactctgtatgttgctgttcacatatgc |
645 |
Q |
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| T |
7087895 |
tgaactccagggtctctttcattgattgaaccatgaaacatgagtgaattattgatactttgtatgttgctgttaacatatgc |
7087813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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