View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8941_high_5 (Length: 671)

Name: NF8941_high_5
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8941_high_5
NF8941_high_5
[»] chr4 (31 HSPs)
chr4 (274-647)||(50114887-50115249)
chr4 (147-278)||(50117489-50117620)
chr4 (1-106)||(50117630-50117735)
chr4 (374-511)||(44646526-44646663)
chr4 (374-511)||(49446594-49446732)
chr4 (383-513)||(6316816-6316946)
chr4 (374-511)||(20389993-20390130)
chr4 (388-459)||(9802631-9802702)
chr4 (387-511)||(33982393-33982517)
chr4 (377-460)||(42844062-42844145)
chr4 (374-460)||(41468103-41468189)
chr4 (378-460)||(42197054-42197136)
chr4 (378-460)||(49144782-49144864)
chr4 (474-511)||(45900250-45900287)
chr4 (408-460)||(31871090-31871142)
chr4 (474-513)||(8297837-8297876)
chr4 (374-460)||(44647882-44647968)
chr4 (406-509)||(53737827-53737930)
chr4 (474-511)||(38945121-38945158)
chr4 (471-511)||(31072568-31072608)
chr4 (411-459)||(53919888-53919936)
chr4 (475-514)||(51291051-51291090)
chr4 (408-509)||(12329264-12329364)
chr4 (471-509)||(39195824-39195862)
chr4 (411-513)||(5047170-5047272)
chr4 (406-459)||(12103873-12103926)
chr4 (424-456)||(27346321-27346353)
chr4 (470-514)||(28165357-28165401)
chr4 (408-459)||(34235932-34235984)
chr4 (410-458)||(37179712-37179760)
chr4 (377-417)||(49769121-49769161)
[»] chr5 (27 HSPs)
chr5 (378-511)||(8247035-8247168)
chr5 (378-509)||(3263717-3263848)
chr5 (377-509)||(10051700-10051832)
chr5 (374-514)||(19692688-19692829)
chr5 (379-512)||(28793302-28793435)
chr5 (377-514)||(35395152-35395290)
chr5 (378-460)||(5356303-5356385)
chr5 (417-496)||(4641494-4641572)
chr5 (423-510)||(4725894-4725980)
chr5 (406-460)||(26663654-26663708)
chr5 (406-460)||(26935249-26935303)
chr5 (411-513)||(591262-591364)
chr5 (474-513)||(23023599-23023638)
chr5 (408-511)||(31672379-31672483)
chr5 (471-513)||(41583509-41583551)
chr5 (473-505)||(10145311-10145343)
chr5 (475-511)||(10410418-10410454)
chr5 (378-486)||(22473427-22473536)
chr5 (411-511)||(13978670-13978770)
chr5 (374-460)||(1354349-1354435)
chr5 (405-459)||(14042483-14042537)
chr5 (474-512)||(25437976-25438014)
chr5 (377-454)||(142359-142436)
chr5 (379-459)||(21582392-21582472)
chr5 (408-460)||(27016690-27016742)
chr5 (474-510)||(30501241-30501277)
chr5 (474-510)||(30541584-30541620)
[»] chr1 (34 HSPs)
chr1 (374-513)||(7549809-7549948)
chr1 (374-513)||(40377008-40377147)
chr1 (410-511)||(34445637-34445738)
chr1 (374-509)||(31745408-31745543)
chr1 (377-513)||(45584505-45584641)
chr1 (378-513)||(31652589-31652723)
chr1 (379-512)||(25302039-25302172)
chr1 (376-485)||(5851529-5851636)
chr1 (408-459)||(4039637-4039688)
chr1 (377-486)||(36393477-36393586)
chr1 (378-457)||(12148304-12148383)
chr1 (406-486)||(40203111-40203191)
chr1 (378-510)||(44719150-44719282)
chr1 (377-459)||(50974578-50974660)
chr1 (378-458)||(48947225-48947305)
chr1 (411-514)||(43492166-43492270)
chr1 (406-459)||(12636341-12636394)
chr1 (474-511)||(39150550-39150587)
chr1 (474-511)||(40570657-40570694)
chr1 (408-460)||(2351402-2351454)
chr1 (474-514)||(3047832-3047872)
chr1 (408-460)||(25095628-25095680)
chr1 (474-514)||(39156226-39156266)
chr1 (474-514)||(39912311-39912351)
chr1 (474-513)||(16113885-16113924)
chr1 (405-459)||(5115638-5115692)
chr1 (408-458)||(33744170-33744220)
chr1 (474-512)||(34861313-34861351)
chr1 (408-458)||(40570711-40570761)
chr1 (408-454)||(45584744-45584790)
chr1 (405-458)||(31043022-31043075)
chr1 (388-460)||(5787457-5787529)
chr1 (474-510)||(18114535-18114571)
chr1 (406-458)||(28672321-28672373)
[»] chr3 (23 HSPs)
chr3 (374-509)||(52340122-52340257)
chr3 (374-453)||(18399160-18399239)
chr3 (374-512)||(27968167-27968303)
chr3 (377-513)||(38704954-38705090)
chr3 (378-513)||(34758895-34759030)
chr3 (375-447)||(7754772-7754844)
chr3 (377-460)||(4033050-4033132)
chr3 (408-458)||(40546348-40546398)
chr3 (374-508)||(54911999-54912133)
chr3 (408-513)||(28434477-28434581)
chr3 (408-459)||(55110047-55110098)
chr3 (474-511)||(37708405-37708442)
chr3 (474-514)||(52308981-52309021)
chr3 (471-509)||(4305240-4305278)
chr3 (378-460)||(30687084-30687166)
chr3 (406-460)||(38388731-38388785)
chr3 (408-458)||(46711949-46711999)
chr3 (472-505)||(4305117-4305150)
chr3 (475-512)||(17517520-17517557)
chr3 (406-459)||(19898135-19898188)
chr3 (475-512)||(29611987-29612024)
chr3 (408-460)||(30463992-30464044)
chr3 (408-460)||(53433221-53433273)
[»] chr8 (17 HSPs)
chr8 (374-513)||(31206276-31206415)
chr8 (378-458)||(38956905-38956985)
chr8 (374-460)||(5020055-5020139)
chr8 (378-459)||(5217763-5217844)
chr8 (379-486)||(45368729-45368836)
chr8 (474-514)||(28207589-28207629)
chr8 (470-512)||(7262119-7262161)
chr8 (474-513)||(1876583-1876622)
chr8 (475-514)||(18808868-18808907)
chr8 (474-513)||(20279656-20279695)
chr8 (474-513)||(21066283-21066322)
chr8 (475-513)||(24869380-24869418)
chr8 (474-512)||(31264964-31265002)
chr8 (472-513)||(7574278-7574319)
chr8 (473-505)||(11995213-11995245)
chr8 (473-505)||(41385368-41385400)
chr8 (472-512)||(43446208-43446248)
[»] chr2 (21 HSPs)
chr2 (379-510)||(20683003-20683134)
chr2 (374-512)||(18053019-18053156)
chr2 (380-507)||(34546275-34546402)
chr2 (374-509)||(44941082-44941216)
chr2 (374-457)||(42945015-42945098)
chr2 (378-512)||(8773678-8773812)
chr2 (406-460)||(2825989-2826043)
chr2 (406-460)||(4238358-4238412)
chr2 (378-460)||(8789875-8789957)
chr2 (408-509)||(6761761-6761862)
chr2 (406-512)||(3882583-3882689)
chr2 (406-511)||(2888876-2888981)
chr2 (474-513)||(5962066-5962105)
chr2 (474-513)||(15816805-15816844)
chr2 (475-514)||(25622499-25622538)
chr2 (474-511)||(13538363-13538401)
chr2 (407-445)||(19495237-19495275)
chr2 (410-459)||(6334709-6334758)
chr2 (405-458)||(8964413-8964466)
chr2 (475-512)||(32859752-32859789)
chr2 (470-514)||(43745589-43745633)
[»] chr7 (27 HSPs)
chr7 (378-514)||(47507575-47507711)
chr7 (379-460)||(48137802-48137883)
chr7 (374-505)||(38452146-38452276)
chr7 (410-513)||(8169997-8170100)
chr7 (378-460)||(43670430-43670512)
chr7 (374-507)||(30412921-30413053)
chr7 (406-514)||(10031954-10032062)
chr7 (382-460)||(2964068-2964146)
chr7 (406-460)||(5248114-5248168)
chr7 (406-459)||(2741193-2741246)
chr7 (474-511)||(27123242-27123279)
chr7 (406-458)||(1360557-1360609)
chr7 (474-514)||(27766787-27766827)
chr7 (474-514)||(34299844-34299884)
chr7 (406-486)||(42493701-42493782)
chr7 (377-460)||(16878726-16878809)
chr7 (474-505)||(17157739-17157770)
chr7 (408-455)||(42890298-42890345)
chr7 (408-510)||(7596181-7596283)
chr7 (474-511)||(28770445-28770482)
chr7 (470-511)||(45375444-45375485)
chr7 (374-443)||(46684557-46684626)
chr7 (474-514)||(14651485-14651525)
chr7 (474-514)||(17302856-17302896)
chr7 (380-460)||(34681711-34681791)
chr7 (407-512)||(36015039-36015144)
chr7 (471-507)||(46726109-46726144)
[»] chr6 (10 HSPs)
chr6 (377-504)||(12383022-12383149)
chr6 (408-506)||(7465451-7465548)
chr6 (380-509)||(31702747-31702874)
chr6 (472-513)||(35229258-35229299)
chr6 (437-514)||(22696000-22696077)
chr6 (382-460)||(35241430-35241509)
chr6 (474-512)||(31854761-31854799)
chr6 (475-508)||(34232057-34232090)
chr6 (474-510)||(4810628-4810664)
chr6 (406-483)||(12307821-12307898)
[»] scaffold0182 (1 HSPs)
scaffold0182 (468-512)||(19657-19701)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 274 - 647
Target Start/End: Complemental strand, 50115249 - 50114887
Alignment:
Q  274 cagaaaagattagagagaaagttgcatgattcgttttgttgcaaatgtaattgattacaccactttctcttgtgaaagtggacataaacaccaaaactat 373  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50115249 cagaaaaaattagagagaaagttgcatgattcgttttgttgcaaatgtaattgattacaccactttctcttgtgaaagtggacataaacaccaaaactat 50115150  T
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 473  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||           |     
T  50115149 aggcctttaaatggtaacttatcataata---tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcttc--------tt 50115061  T
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccctttnnnnnnncatcatccctatatatcaagacattacatacgatccacatatcataataagc 573  Q
     | |||||||||| ||| |||||||||||||||||||||||       ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  50115060 ttgaaagagtgccccggaggcactcgttaacaagaccctttaaaaaaacatcatccctatatatcaaaacattacatacgatccacatatcataataagc 50114961  T
Q  574 aggttgtttattccaattattattatggcaaccttaatacgttataaatagggtttgacaatgggtttggcact 647  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50114960 aggttgtttattccaattattattatggcaaccttaatacgttataaatagggtttgacaatgggtttggcact 50114887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 147 - 278
Target Start/End: Complemental strand, 50117620 - 50117489
Alignment:
Q  147 actcattaattgcattggaaaactgcaaccaaacattaaatagcaaggcaaatgcactttaagacagaaaggtgtaacataaaaccacttaatgttcata 246  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50117620 actcattaattgcatgggaaaactgcaaccaaacattaaatagcaaggcaaatgcactttaagacagaaaggtgtaacataaaaccacttaatgttcata 50117521  T
Q  247 tatcaactcaatgtatccatgagaatacagaa 278  Q
    ||||||||||||||||||||||||||||||||    
T  50117520 tatcaactcaatgtatccatgagaatacagaa 50117489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 50117735 - 50117630
Alignment:
Q  1 atgactgattccattaaattaaagaacggaaaagatgtcagggaggaatgtactcaacagacgtgctgctcatctaggggatgaccaaaagcattaaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50117735 atgactgattccattaaattaaagaacggaaaagatgtcagggaggaatgtactcaacagacgtgctgctcatctaggggatgaccaaaagcattaaatg 50117636  T
Q  101 tgactg 106  Q
    ||||||    
T  50117635 tgactg 50117630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 374 - 511
Target Start/End: Original strand, 44646526 - 44646663
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 473  Q
    |||| ||| ||| |||||||||||| | ||  |||||||||||||||| |||||||||||| ||||||||| |||||||||| ||||       ||||||    
T  44646526 aggcttttgaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgactttattataaaatagtttcttcttttgaaatc 44646625  T
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccc 511  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  44646626 cttaaagaatgccccgggggcactcgttaacaagaccc 44646663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 374 - 511
Target Start/End: Original strand, 49446594 - 49446732
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgac-ttttttataaaataatttcnnnnnnngaaat 472  Q
    |||||||||||| |||||||||||| | ||  |||||||||||||||| |||||||||||| |||||| ||||||||||||||| |||       | |||    
T  49446594 aggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgactttttttataaaataacttcttcttttggaat 49446693  T
Q  473 ccttaaagagtgcctcgggggcactcgttaacaagaccc 511  Q
    |||||||||||||| || ||||||| |||||||||||||    
T  49446694 ccttaaagagtgccccgagggcacttgttaacaagaccc 49446732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 383 - 513
Target Start/End: Original strand, 6316816 - 6316946
Alignment:
Q  383 aatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagag 482  Q
    |||| ||||||||||| | ||  |||||||||||||||| | ||||| ||||||||| |||||||||||||| |||||       |||||| ||||||||    
T  6316816 aatgataacttatcatgaaaatatgtgtaatcaatgcattgaaaatcaaaatctttgccttttttataaaattatttcttcttttgaaatctttaaagag 6316915  T
Q  483 tgcctcgggggcactcgttaacaagaccctt 513  Q
    |||| ||| ||||||||||||||||||||||    
T  6316916 tgccccggaggcactcgttaacaagaccctt 6316946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 374 - 511
Target Start/End: Complemental strand, 20390130 - 20389993
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 473  Q
    |||| |||||||||||||||||||| | ||||||||| |||||||||| | ||||| |||| ||||||||||||||||||| |||||       | |||     
T  20390130 aggcttttaaatggtaacttatcatgaaaagttgtgtgatcaatgcatcgaaaatcaaaatatttgacttttttataaaattatttcttgttttggaatt 20390031  T
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccc 511  Q
    |||||||| |||| ||||  ||||||||||||||||||    
T  20390030 cttaaagaatgccccgggaacactcgttaacaagaccc 20389993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 9802631 - 9802702
Alignment:
Q  388 taacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 459  Q
    ||||||||||||| ||  ||||||||||||| || ||||||| |||| ||||||||||||||||||||||||    
T  9802631 taacttatcataaaaatatgtgtaatcaatgtatcggaaatcaaaatatttgacttttttataaaataattt 9802702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 387 - 511
Target Start/End: Complemental strand, 33982517 - 33982393
Alignment:
Q  387 gtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcc 486  Q
    |||||||||||| | ||  | ||||||||||| || |||||||||||| ||| ||||||||||||||||||||        |||||||||||||| | ||    
T  33982517 gtaacttatcatgaaaatatatgtaatcaatgtatcggaaatcgaaatatttaacttttttataaaataattttttcttttgaaatccttaaagaatacc 33982418  T
Q  487 tcgggggcactcgttaacaagaccc 511  Q
     ||| | |||||||| |||||||||    
T  33982417 ccggagccactcgttcacaagaccc 33982393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 377 - 460
Target Start/End: Complemental strand, 42844145 - 42844062
Alignment:
Q  377 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    |||||||| ||||| |||| || | ||  |||||||||||||||| | |||||||||| ||||| |||||||||||||||||||    
T  42844145 cctttaaagggtaatttattatgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgatttttttataaaataatttc 42844062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 374 - 460
Target Start/End: Complemental strand, 41468189 - 41468103
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    |||||||||||||||||||| |||||| ||    ||||||||||||||  ||||||| ||| ||| |||||||||||| ||||||||    
T  41468189 aggcctttaaatggtaacttttcataaaaatacatgtaatcaatgcatcagaaatcggaatatttaacttttttataacataatttc 41468103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 460
Target Start/End: Complemental strand, 42197136 - 42197054
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    ||||||||||||| ||||||||| ||  ||||||||||||| || | ||||| |||| ||||| ||||| |||||||||||||    
T  42197136 ctttaaatggtaatttatcataaaaatatgtgtaatcaatgtatcgaaaatcaaaatatttgattttttaataaaataatttc 42197054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 460
Target Start/End: Complemental strand, 49144864 - 49144782
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    ||||||||||||| || |||||| ||  | |||||||||||||| | ||||| |||| ||| |||||||||||||||||||||    
T  49144864 ctttaaatggtaatttttcataaaaatatatgtaatcaatgcatcgaaaatcaaaatttttaacttttttataaaataatttc 49144782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 474 - 511
Target Start/End: Original strand, 45900250 - 45900287
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccc 511  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45900250 cttaaagagtgcctcgggggcactcgttaacaagaccc 45900287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 31871090 - 31871142
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    |||||||||||||| |||||| ||||| ||| |||||||||||||||||||||    
T  31871090 tgtaatcaatgcatcggaaattgaaatattttacttttttataaaataatttc 31871142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 474 - 513
Target Start/End: Complemental strand, 8297876 - 8297837
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  8297876 cttaaagagtgccccgggggcactcgttaacaagaccctt 8297837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 460
Target Start/End: Original strand, 44647882 - 44647968
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    |||||||| ||| |||||||||||| | ||  |||||||| ||||||| |||||| ||||| ||||| ||| |||||||||| ||||    
T  44647882 aggcctttgaatagtaacttatcatgaaaatatgtgtaattaatgcatcggaaattgaaatatttgattttattataaaatagtttc 44647968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 509
Target Start/End: Original strand, 53737827 - 53737930
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaaca 505  Q
    |||||| ||||||||| |||||||||||| ||||| ||||||| | |||||||||       | ||  |||||||||||||  |||||||||||||| ||    
T  53737827 tgtgtattcaatgcattggaaatcgaaatatttgaattttttaaagaataatttcttattttggaacgcttaaagagtgccctgggggcactcgttagca 53737926  T
Q  506 agac 509  Q
    ||||    
T  53737927 agac 53737930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 511
Target Start/End: Original strand, 38945121 - 38945158
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccc 511  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  38945121 cttaaagagtgccgcgggggcactcgttaacaagaccc 38945158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 511
Target Start/End: Original strand, 31072568 - 31072608
Alignment:
Q  471 atccttaaagagtgcctcgggggcactcgttaacaagaccc 511  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  31072568 atccttaaagagtggcccgggggcactcgttaacaagaccc 31072608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 459
Target Start/End: Complemental strand, 53919936 - 53919888
Alignment:
Q  411 aatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 459  Q
    ||||||||||| |||||| ||||| ||||||||||||||| ||||||||    
T  53919936 aatcaatgcatcggaaattgaaatttttgacttttttatagaataattt 53919888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 475 - 514
Target Start/End: Complemental strand, 51291090 - 51291051
Alignment:
Q  475 ttaaagagtgcctcgggggcactcgttaacaagacccttt 514  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  51291090 ttaaagagtgcctcgagggcattcgttaacaagacccttt 51291051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 509
Target Start/End: Complemental strand, 12329364 - 12329264
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgactttttt-ataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaa 506  Q
    ||||||||||||||  ||||| ||||| |||||||||||| ||  |||||||||       ||||| |||||||||||| |  |||||||||||||||||    
T  12329364 tgtaatcaatgcatttgaaattgaaatatttgactttttttatggaataatttctccttttgaaatgcttaaagagtgcat--ggggcactcgttaacaa 12329267  T
Q  507 gac 509  Q
    |||    
T  12329266 gac 12329264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 509
Target Start/End: Original strand, 39195824 - 39195862
Alignment:
Q  471 atccttaaagagtgcctcgggggcactcgttaacaagac 509  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  39195824 atccttaaagagtgccttgagggcactcgttaacaagac 39195862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 513
Target Start/End: Complemental strand, 5047272 - 5047170
Alignment:
Q  411 aatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaagacc 510  Q
    ||||||||||| |||||| ||||| |||||||||| ||   |||||||||       ||||||||||| |||||||    |||||||||||||||| |||    
T  5047272 aatcaatgcattggaaattgaaatttttgacttttgtaatgaataatttctttattagaaatccttaatgagtgcccttagggcactcgttaacaaaacc 5047173  T
Q  511 ctt 513  Q
    |||    
T  5047172 ctt 5047170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 459
Target Start/End: Original strand, 12103873 - 12103926
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 459  Q
    |||||||||||||  | |||||||||| | |||||||||||||| |||||||||    
T  12103873 tgtgtaatcaatgttttggaaatcgaattatttgacttttttatgaaataattt 12103926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 424 - 456
Target Start/End: Complemental strand, 27346353 - 27346321
Alignment:
Q  424 gaaatcgaaatctttgacttttttataaaataa 456  Q
    |||||| ||||||||||||||||||||||||||    
T  27346353 gaaatcaaaatctttgacttttttataaaataa 27346321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 470 - 514
Target Start/End: Complemental strand, 28165401 - 28165357
Alignment:
Q  470 aatccttaaagagtgcctcgggggcactcgttaacaagacccttt 514  Q
    |||| |||||||||  ||| |||||||||||||||||||||||||    
T  28165401 aatctttaaagagtatctcaggggcactcgttaacaagacccttt 28165357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 459
Target Start/End: Complemental strand, 34235984 - 34235932
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgactt-ttttataaaataattt 459  Q
    |||||||||||||| | |||| ||||| |||||||| ||||||||||||||||    
T  34235984 tgtaatcaatgcattgaaaattgaaatttttgactttttttataaaataattt 34235932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 410 - 458
Target Start/End: Complemental strand, 37179760 - 37179712
Alignment:
Q  410 taatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 458  Q
    |||||||| ||| |||||||||||| |||||||||| || |||||||||    
T  37179760 taatcaatacattggaaatcgaaatgtttgacttttctaaaaaataatt 37179712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 49769121 - 49769161
Alignment:
Q  377 cctttaaatggtaacttatcataataagttgtgtaatcaat 417  Q
    |||||||||||||||||||||||| ||  ||||||||||||    
T  49769121 cctttaaatggtaacttatcataaaaatatgtgtaatcaat 49769161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 378 - 511
Target Start/End: Complemental strand, 8247168 - 8247035
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctta 477  Q
    ||||||||||||||||||||| | ||||||| |||||||||||| |||||||||||| ||||||||||||||||||| |||||       | ||||||||    
T  8247168 ctttaaatggtaacttatcatgaaaagttgtataatcaatgcatcggaaatcgaaatatttgacttttttataaaattatttcttcttttggaatcctta 8247069  T
Q  478 aagagtgcctcgggggcactcgttaacaagaccc 511  Q
    ||||||| | ||||||||||||||||||||||||    
T  8247068 aagagtgtcacgggggcactcgttaacaagaccc 8247035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 378 - 509
Target Start/End: Complemental strand, 3263848 - 3263717
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctta 477  Q
    ||||||||||||||||||||| | ||  |||||||||||||||| |||||||||||||||||||||||||||||||| |||||       ||||| ||||    
T  3263848 ctttaaatggtaacttatcattaaaatatgtgtaatcaatgcatcggaaatcgaaatctttgacttttttataaaatgatttcttcttttgaaattctta 3263749  T
Q  478 aagagtgcctcgggggcactcgttaacaagac 509  Q
    ||||||||| |||  |||||||||||||||||    
T  3263748 aagagtgccccggaagcactcgttaacaagac 3263717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 377 - 509
Target Start/End: Complemental strand, 10051832 - 10051700
Alignment:
Q  377 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctt 476  Q
    ||||||||||||||||||| || | ||||||| |||||||||||| ||||||  |||| ||||||||||||||||||| |||||        ||||||||    
T  10051832 cctttaaatggtaacttattatgaaaagttgtataatcaatgcatcggaaatataaatatttgacttttttataaaattatttcttcttttaaaatcctt 10051733  T
Q  477 aaagagtgcctcgggggcactcgttaacaagac 509  Q
    |||||||||||  ||| ||||||||||||||||    
T  10051732 aaagagtgccttagggacactcgttaacaagac 10051700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 374 - 514
Target Start/End: Complemental strand, 19692829 - 19692688
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgactttttt-ataaaataatttcnnnnnnngaaat 472  Q
    |||||||||||| |||||||||||| | |   |||||||||||||||| | |||||||||| |||||||||||| ||||| |||||||       |||||    
T  19692829 aggcctttaaattgtaacttatcatcaaattatgtgtaatcaatgcattgaaaatcgaaatatttgactttttttataaattaatttcttcttttgaaat 19692730  T
Q  473 ccttaaagagtgcctcgggggcactcgttaacaagacccttt 514  Q
    | |||||||||||| ||||| ||||||||||||| |||||||    
T  19692729 ctttaaagagtgccccggggacactcgttaacaaaacccttt 19692688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 379 - 512
Target Start/End: Complemental strand, 28793435 - 28793302
Alignment:
Q  379 tttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaa 478  Q
    |||||||||||| ||||||||| ||  | |||||| ||||||| |||||||||||| ||||||||||||||||||| |||||       | |||||||||    
T  28793435 tttaaatggtaaattatcataaaaatatatgtaattaatgcatcggaaatcgaaatatttgacttttttataaaatcatttcttcttttggaatccttaa 28793336  T
Q  479 agagtgcctcgggggcactcgttaacaagaccct 512  Q
    |||| ||  |||  ||||||||||||||||||||    
T  28793335 agagcgcaccggaagcactcgttaacaagaccct 28793302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 377 - 514
Target Start/End: Complemental strand, 35395290 - 35395152
Alignment:
Q  377 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctt 476  Q
    ||||| ||||| |||||||||| | ||  |||||||||||||||| | ||||  |||| |||||||||||||||||||| ||||       | |||||||    
T  35395290 ccttttaatggcaacttatcatgaaaatatgtgtaatcaatgcatcgaaaattaaaatatttgacttttttataaaatagtttcttcttttggaatcctt 35395191  T
Q  477 aaagagt-gcctcgggggcactcgttaacaagacccttt 514  Q
    ||||||| ||||| |||| ||||||||||||||||||||    
T  35395190 aaagagtagcctccggggtactcgttaacaagacccttt 35395152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 378 - 460
Target Start/End: Original strand, 5356303 - 5356385
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    ||||||||||||||||||||| | ||  |||||||||||||||| | |||||||||| |||||| |||||||||| |||||||    
T  5356303 ctttaaatggtaacttatcatgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgacgtttttataaattaatttc 5356385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 417 - 496
Target Start/End: Original strand, 4641494 - 4641572
Alignment:
Q  417 tgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcac 496  Q
    ||||| |||||||||||||||||||||||||| ||||||||||        |||||||||||||||||||||| ||||||    
T  4641494 tgcattggaaatcgaaatctttgactttttta-aaaataatttattcattagaaatccttaaagagtgcctcgagggcac 4641572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 510
Target Start/End: Original strand, 4725894 - 4725980
Alignment:
Q  423 ggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaagacc 510  Q
    ||||||||||||||||||| |||||||||||||||||        |||||||||||| ||||  |||||| |||||||||||||||||    
T  4725894 ggaaatcgaaatctttgac-tttttataaaataatttattcttttgaaatccttaaacagtgtttcggggacactcgttaacaagacc 4725980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 406 - 460
Target Start/End: Complemental strand, 26663708 - 26663654
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    |||||||||||| ||| |||||||||||| ||||||||||||| |||||||||||    
T  26663708 tgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttc 26663654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 406 - 460
Target Start/End: Complemental strand, 26935303 - 26935249
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    |||||||||||| ||| |||||||||||| ||||||||||||| |||||||||||    
T  26935303 tgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttc 26935249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 411 - 513
Target Start/End: Original strand, 591262 - 591364
Alignment:
Q  411 aatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaagacc 510  Q
    ||||||||||| |||||| ||| | || |||||||||| | |||||||||       ||||||||||||||||| ||   ||||||||||||||||||||    
T  591262 aatcaatgcattggaaattgaagttttcgacttttttaaagaataatttctttattagaaatccttaaagagtgtctttagggcactcgttaacaagacc 591361  T
Q  511 ctt 513  Q
    |||    
T  591362 ctt 591364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 474 - 513
Target Start/End: Complemental strand, 23023638 - 23023599
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  23023638 cttaaagagtgccccgggggcactcgttaacaagaccctt 23023599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 408 - 511
Target Start/End: Complemental strand, 31672483 - 31672379
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgactttttt-ataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaa 506  Q
    |||||||||||||| |||||| ||||  |||||||||||| ||  |||| ||||       | ||| ||||||||||||| |||||||||||||||||||    
T  31672483 tgtaatcaatgcattggaaattgaaacatttgactttttttatggaatagtttctccttttggaatgcttaaagagtgccccgggggcactcgttaacaa 31672384  T
Q  507 gaccc 511  Q
    |||||    
T  31672383 gaccc 31672379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 513
Target Start/End: Complemental strand, 41583551 - 41583509
Alignment:
Q  471 atccttaaagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    |||||||||||||| | ||||||||||||||||||||||||||    
T  41583551 atccttaaagagtgacccgggggcactcgttaacaagaccctt 41583509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 473 - 505
Target Start/End: Complemental strand, 10145343 - 10145311
Alignment:
Q  473 ccttaaagagtgcctcgggggcactcgttaaca 505  Q
    |||||||||||||||||||||||||||||||||    
T  10145343 ccttaaagagtgcctcgggggcactcgttaaca 10145311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 511
Target Start/End: Complemental strand, 10410454 - 10410418
Alignment:
Q  475 ttaaagagtgcctcgggggcactcgttaacaagaccc 511  Q
    |||||||||||| ||||||||||||||||||||||||    
T  10410454 ttaaagagtgccccgggggcactcgttaacaagaccc 10410418  T

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Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 486
Target Start/End: Complemental strand, 22473536 - 22473427
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga-cttttttataaaataatttcnnnnnnngaaatcctt 476  Q
    ||||||||||||||||||| | | ||  ||||||||||||||||  |||||  |||| |||||  |||||||||||||||||||       |||||||||    
T  22473536 ctttaaatggtaacttatcgtgaaaatatgtgtaatcaatgcatcagaaattaaaatatttgattttttttataaaataatttcttcttttgaaatcctt 22473437  T
Q  477 aaagagtgcc 486  Q
    ||||| ||||    
T  22473436 aaagaatgcc 22473427  T

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Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 511
Target Start/End: Original strand, 13978670 - 13978770
Alignment:
Q  411 aatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaagacc 510  Q
    ||||||||||| |||||| ||| | ||| |||||||||  ||||||||||       |||||||||||| |||||||   || |||||||||||||||||    
T  13978670 aatcaatgcattggaaattgaagtttttaacttttttaagaaataatttctttattggaaatccttaaaaagtgcctttaggacactcgttaacaagacc 13978769  T
Q  511 c 511  Q
    |    
T  13978770 c 13978770  T

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Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 460
Target Start/End: Original strand, 1354349 - 1354435
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    ||||||||||| ||||| ||||||| | ||  | | ||||||||  ||  ||||||||||| ||| |||||||||||||||||||||    
T  1354349 aggcctttaaaaggtaaattatcatgaaaatatatataatcaatatattagaaatcgaaatatttaacttttttataaaataatttc 1354435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 459
Target Start/End: Complemental strand, 14042537 - 14042483
Alignment:
Q  405 ttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 459  Q
    |||| |||||||||||| ||||||| |||| ||||||||||||| | ||||||||    
T  14042537 ttgtataatcaatgcattggaaatcaaaatatttgacttttttaaataataattt 14042483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 512
Target Start/End: Original strand, 25437976 - 25438014
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccct 512  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  25437976 cttaaagagtgtcccgggggcactcgttaacaagaccct 25438014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 454
Target Start/End: Original strand, 142359 - 142436
Alignment:
Q  377 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaat 454  Q
    ||||||||  |||||||||||||| |   ||||||||||||| ||  ||||| ||||| ||||| |||||||||||||    
T  142359 cctttaaaatgtaacttatcataaaattatgtgtaatcaatgtatcagaaattgaaatatttgatttttttataaaat 142436  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 459
Target Start/End: Complemental strand, 21582472 - 21582392
Alignment:
Q  379 tttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 459  Q
    |||||| | ||||||||||| | ||  ||||| |||| || ||  ||||||||||| ||||||| ||||||||||||||||    
T  21582472 tttaaaggataacttatcatgaaaatgtgtgtgatcattgtatcagaaatcgaaatatttgactattttataaaataattt 21582392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 460
Target Start/End: Complemental strand, 27016742 - 27016690
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    ||||||| |||||| |||||| ||||| ||||||||||||||  |||||||||    
T  27016742 tgtaatcgatgcattggaaattgaaatttttgacttttttatggaataatttc 27016690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 510
Target Start/End: Original strand, 30501241 - 30501277
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagacc 510  Q
    |||||||||||||  ||||||||||||||||||||||    
T  30501241 cttaaagagtgccctgggggcactcgttaacaagacc 30501277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 510
Target Start/End: Original strand, 30541584 - 30541620
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagacc 510  Q
    |||||||||||||  ||||||||||||||||||||||    
T  30541584 cttaaagagtgccctgggggcactcgttaacaagacc 30541620  T

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Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 374 - 513
Target Start/End: Complemental strand, 7549948 - 7549809
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 473  Q
    |||||||||||| |||||||||||| | ||||||||| ||||||||||  ||||||||||| ||||||||||||||||||| |||||       |||||     
T  7549948 aggcctttaaattgtaacttatcatgaaaagttgtgtgatcaatgcatcagaaatcgaaatatttgacttttttataaaattatttcttcttttgaaatt 7549849  T
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    ||||||||||| | || || ||||||||||||||||||||    
T  7549848 cttaaagagtgtcccgaggacactcgttaacaagaccctt 7549809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 374 - 513
Target Start/End: Complemental strand, 40377147 - 40377008
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 473  Q
    ||||||||||||||||| ||||||| | ||||||||||||||||| || || |||| |||| ||||||||||||||||||| |||||       | ||||    
T  40377147 aggcctttaaatggtaatttatcatgaaaagttgtgtaatcaatgaattgggaatcaaaatatttgacttttttataaaattatttcttcttttggaatc 40377048  T
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    |||||||||||||   ||||||||||||||||||||||||    
T  40377047 cttaaagagtgcccaaggggcactcgttaacaagaccctt 40377008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 410 - 511
Target Start/End: Complemental strand, 34445738 - 34445637
Alignment:
Q  410 taatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaagac 509  Q
    |||||||||||| |||||||||||| ||||||||||||||||| |||||||       | ||||||||||||||||  ||||||||||||||||||||||    
T  34445738 taatcaatgcattggaaatcgaaatatttgacttttttataaattaatttcttcttttggaatccttaaagagtgctccgggggcactcgttaacaagac 34445639  T
Q  510 cc 511  Q
    ||    
T  34445638 cc 34445637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 374 - 509
Target Start/End: Original strand, 31745408 - 31745543
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 473  Q
    |||||||||||| |||||||||||||| ||  |||||||||||||||| |  ||||||||| ||||||||| ||||||||||||||          ||||    
T  31745408 aggcctttaaatagtaacttatcataaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatc 31745507  T
Q  474 cttaaagagtgcctcgggggcactcgttaacaagac 509  Q
     |||||||||||||||| |||||| |||||||||||    
T  31745508 tttaaagagtgcctcggaggcactagttaacaagac 31745543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 377 - 513
Target Start/End: Complemental strand, 45584641 - 45584505
Alignment:
Q  377 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctt 476  Q
    ||||||||  |||||||||||| | ||  |||||||||||| |||  |||||  |||| ||| |||||||||||||||||||||       | |||||||    
T  45584641 cctttaaaaagtaacttatcatgaaaatatgtgtaatcaatacatcagaaattaaaatatttaacttttttataaaataatttcttcttttggaatcctt 45584542  T
Q  477 aaagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    |||||||||| |||||||| |||||||||||||||||    
T  45584541 aaagagtgccccgggggcattcgttaacaagaccctt 45584505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 378 - 513
Target Start/End: Complemental strand, 31652723 - 31652589
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctta 477  Q
    |||||||||||||| |||||| | ||  |||||||||| ||||| ||||||  |||| |||||||||||||||||||||||||       ||||||||||    
T  31652723 ctttaaatggtaacctatcatgaaaatatgtgtaatcattgcatcggaaattaaaatatttgacttttttataaaataatttc-ttttttgaaatcctta 31652625  T
Q  478 aagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    |||||| |  ||| | ||||||||||||||||||||    
T  31652624 aagagttctccggagacactcgttaacaagaccctt 31652589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 379 - 512
Target Start/End: Complemental strand, 25302172 - 25302039
Alignment:
Q  379 tttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaa 478  Q
    |||||||||||||||||||| | ||  ||||||||||||| || | |||||||||||||||||||||||||| ||| ||||        | |||||||||    
T  25302172 tttaaatggtaacttatcatgaaaatatgtgtaatcaatgtattgaaaatcgaaatctttgacttttttatacaattattttttgttttggaatccttaa 25302073  T
Q  479 agagtgcctcgggggcactcgttaacaagaccct 512  Q
    ||||||    |||| |||||||||||||||||||    
T  25302072 agagtgttctggggacactcgttaacaagaccct 25302039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 376 - 485
Target Start/End: Complemental strand, 5851636 - 5851529
Alignment:
Q  376 gcctttaaatggtaacttatcat-aataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcc 474  Q
    ||||||||||||||||||||||| ||||   | |||||||||||||| | |||||||||||||||| ||||||||||||| |||||       |||||||    
T  5851636 gcctttaaatggtaacttatcatgaata---tttgtaatcaatgcatcgaaaatcgaaatctttgatttttttataaaattatttcttcttttgaaatcc 5851540  T
Q  475 ttaaagagtgc 485  Q
    |||||||||||    
T  5851539 ttaaagagtgc 5851529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 408 - 459
Target Start/End: Original strand, 4039637 - 4039688
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 459  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  4039637 tgtaatcaatgcattggaaatcgaaatatttgacttttttataaaataattt 4039688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 377 - 486
Target Start/End: Complemental strand, 36393586 - 36393477
Alignment:
Q  377 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctt 476  Q
    |||||||||||||||||||||| | ||   ||||||||||||||| | ||||| |||| ||||| |||||||||| |||||||        |||||||||    
T  36393586 cctttaaatggtaacttatcatgaaaatacgtgtaatcaatgcatcgaaaatcaaaatatttgatttttttataacataattttttcttttgaaatcctt 36393487  T
Q  477 aaagagtgcc 486  Q
    ||||||||||    
T  36393486 aaagagtgcc 36393477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 378 - 457
Target Start/End: Original strand, 12148304 - 12148383
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataat 457  Q
    ||||||||||||||||||||| | ||  ||||||| |||||||| ||||||| |||| ||| ||||||| ||||||||||    
T  12148304 ctttaaatggtaacttatcatgaaaatatgtgtaaccaatgcattggaaatcaaaatattttactttttcataaaataat 12148383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 406 - 486
Target Start/End: Original strand, 40203111 - 40203191
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcc 486  Q
    |||||||||||||||| |||||| ||||| |||||||||||||| ||||||||||       | |||||||||||||||||    
T  40203111 tgtgtaatcaatgcattggaaattgaaatatttgacttttttatgaaataatttcttgttttgtaatccttaaagagtgcc 40203191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 378 - 510
Target Start/End: Complemental strand, 44719282 - 44719150
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctta 477  Q
    ||||||||||||| ||||||| | ||  |||||||||| |||||  ||||||| ||| ||| |||||||||||||||||| |        | ||||||||    
T  44719282 ctttaaatggtaatttatcatgaaaatgtgtgtaatcattgcatcagaaatcggaatatttaacttttttataaaataatatatttttttggaatcctta 44719183  T
Q  478 aagagtgcctcgggggcactcgttaacaagacc 510  Q
    || |||| | ||||| |||||||||||||||||    
T  44719182 aaaagtgtcccggggacactcgttaacaagacc 44719150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 459
Target Start/End: Original strand, 50974578 - 50974660
Alignment:
Q  377 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 459  Q
    |||||||||||||| ||||||| | ||  | |||||| ||||||| | |||| ||||| ||||||||||||||||||||||||    
T  50974578 cctttaaatggtaatttatcatgaaaatatatgtaattaatgcatcgaaaattgaaatatttgacttttttataaaataattt 50974660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 378 - 458
Target Start/End: Complemental strand, 48947305 - 48947225
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 458  Q
    |||||||||||||||| | || | || ||||||||||| ||||| |||||| |||| ||||||| |||||| |||||||||    
T  48947305 ctttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattgaaaactttgacatttttaaaaaataatt 48947225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 514
Target Start/End: Original strand, 43492166 - 43492270
Alignment:
Q  411 aatcaatgcataggaaatcgaaatctttgactttttt-ataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaagac 509  Q
    ||||||||||| |||||| ||| | |||||||||||| | |||||||||||       | |||||||||||||||||    |||||||||||||||||||    
T  43492166 aatcaatgcattggaaattgaagtttttgactttttttaaaaaataatttctttattaggaatccttaaagagtgcccttagggcactcgttaacaagac 43492265  T
Q  510 ccttt 514  Q
    |||||    
T  43492266 ccttt 43492270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 459
Target Start/End: Original strand, 12636341 - 12636394
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 459  Q
    ||||||||||||| |||||||||||||||  |||||||||| ||||||| ||||    
T  12636341 tgtgtaatcaatgtataggaaatcgaaatacttgactttttaataaaattattt 12636394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 39150587 - 39150550
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccc 511  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  39150587 cttaaagagtgccccgggggcactcgttaacaagaccc 39150550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 40570694 - 40570657
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccc 511  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  40570694 cttaaagagtgccccgggggcactcgttaacaagaccc 40570657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 460
Target Start/End: Complemental strand, 2351454 - 2351402
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    |||||||||||||| ||||||  |||| |||||||||||||| ||||||||||    
T  2351454 tgtaatcaatgcatcggaaattaaaatgtttgacttttttatgaaataatttc 2351402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 474 - 514
Target Start/End: Complemental strand, 3047872 - 3047832
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagacccttt 514  Q
    ||||||||||||| ||||||||||| |||||||||||||||    
T  3047872 cttaaagagtgccccgggggcactctttaacaagacccttt 3047832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 460
Target Start/End: Complemental strand, 25095680 - 25095628
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    |||||||||||||| | |||| ||||| |||||||||||||| ||||||||||    
T  25095680 tgtaatcaatgcatcgaaaattgaaatatttgacttttttatgaaataatttc 25095628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 474 - 514
Target Start/End: Complemental strand, 39156266 - 39156226
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagacccttt 514  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  39156266 cttaaagagtgtctcaggggcactcgttaacaagacccttt 39156226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 474 - 514
Target Start/End: Original strand, 39912311 - 39912351
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagacccttt 514  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  39912311 cttaaagagtgtcccgggggcactcgttaacaagacccttt 39912351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 513
Target Start/End: Complemental strand, 16113924 - 16113885
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  16113924 cttaaagagtgccccggaggcactcgttaacaagaccctt 16113885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 459
Target Start/End: Original strand, 5115638 - 5115692
Alignment:
Q  405 ttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 459  Q
    ||||||||| ||||||| |||||| ||||| ||| |||||||||||| |||||||    
T  5115638 ttgtgtaattaatgcattggaaattgaaatatttaacttttttataacataattt 5115692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 33744170 - 33744220
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 458  Q
    |||||||||||||| | |||||||||| ||||||||||| | |||||||||    
T  33744170 tgtaatcaatgcattgaaaatcgaaatatttgactttttaaaaaaataatt 33744220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 512
Target Start/End: Original strand, 34861313 - 34861351
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccct 512  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  34861313 cttaaagagtgcccccggggcactcgttaacaagaccct 34861351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 40570761 - 40570711
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 458  Q
    |||||||||||  |||||||||||||| ||||||||||||| | |||||||    
T  40570761 tgtaatcaatgtctaggaaatcgaaatgtttgacttttttaaagaataatt 40570711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 454
Target Start/End: Complemental strand, 45584790 - 45584744
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaat 454  Q
    |||||||||||||| ||||||| |||| ||||| |||||||||||||    
T  45584790 tgtaatcaatgcatcggaaatcaaaatatttgatttttttataaaat 45584744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 458
Target Start/End: Complemental strand, 31043075 - 31043022
Alignment:
Q  405 ttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 458  Q
    ||||||||||||||||| | |||| |||| ||||||| |||||| |||||||||    
T  31043075 ttgtgtaatcaatgcattgaaaattgaaaactttgacatttttaaaaaataatt 31043022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 388 - 460
Target Start/End: Original strand, 5787457 - 5787529
Alignment:
Q  388 taacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    |||||||||| || ||  |||||||| ||||||| |||||| ||||| ||| ||| |||||||||||| ||||    
T  5787457 taacttatcaaaaaaatatgtgtaattaatgcattggaaattgaaatatttaactattttataaaatattttc 5787529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 510
Target Start/End: Original strand, 18114535 - 18114571
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagacc 510  Q
    ||||||||||||| || ||||||||||||||||||||    
T  18114535 cttaaagagtgccccgcgggcactcgttaacaagacc 18114571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 458
Target Start/End: Original strand, 28672321 - 28672373
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 458  Q
    ||||||||||||||||   ||||| |||| ||||||||||||| |||||||||    
T  28672321 tgtgtaatcaatgcatttaaaatcaaaatatttgacttttttaaaaaataatt 28672373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 374 - 509
Target Start/End: Original strand, 52340122 - 52340257
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga-cttttttataaaataatttcnnnnnnngaaat 472  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||||| ||||||||||||||||||  ||||||||||||| |||||       | |||    
T  52340122 aggcctttaaatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatctttgattttttttataaaattatttcttcctttggaat 52340221  T
Q  473 ccttaaagagtgcctcgggggcactcgttaacaagac 509  Q
    |||||||||||||||| || | |||||||||||||||    
T  52340222 ccttaaagagtgcctc-ggagaactcgttaacaagac 52340257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 374 - 453
Target Start/End: Original strand, 18399160 - 18399239
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaa 453  Q
    |||| |||||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  18399160 aggcttttaaatggtaacttatcatgaaaagttgtgtaatcaatgcatcggaaatcgaaatatttgacttttttataaaa 18399239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 374 - 512
Target Start/End: Complemental strand, 27968303 - 27968167
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatc-aatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaat 472  Q
    ||||||||||||||||||||||||| | ||  ||||||||| ||||||| | ||||| ||||||||||||||||||| |||| |||||       | |||    
T  27968303 aggcctttaaatggtaacttatcatgaaaatatgtgtaatcaaatgcatcgaaaatcaaaatctttgacttttttat-aaattatttcttcttttggaat 27968205  T
Q  473 ccttaaagagtgcctcgggggcactcgttaacaagaccct 512  Q
    ||||||| ||||  || |||||||||||||||||||||||    
T  27968204 ccttaaaaagtg--tccggggcactcgttaacaagaccct 27968167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 377 - 513
Target Start/End: Original strand, 38704954 - 38705090
Alignment:
Q  377 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctt 476  Q
    ||||||||||  || ||||||||  ||  |||||||||||||||| ||||||| |||| |||||| |||||||||||||||||          ||| |||    
T  38704954 cctttaaatgacaatttatcatacaaatatgtgtaatcaatgcatcggaaatcaaaatatttgacatttttataaaataattttttctttttgaattctt 38705053  T
Q  477 aaagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    ||||||| | |||||||||||||||||||||||||||    
T  38705054 aaagagtacttcgggggcactcgttaacaagaccctt 38705090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 513
Target Start/End: Complemental strand, 34759030 - 34758895
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctta 477  Q
    |||||||| ||||||||||||   ||  | ||||||||||||||  | | ||||||| ||| ||||||||||||||||||| |         ||||||||    
T  34759030 ctttaaatagtaacttatcatggaaatatatgtaatcaatgcatcaggagtcgaaatatttcacttttttataaaataattacttctttttgaatcctta 34758931  T
Q  478 aagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    ||||||||| ||| ||||||||||||||||||||||    
T  34758930 aagagtgccccggaggcactcgttaacaagaccctt 34758895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 375 - 447
Target Start/End: Original strand, 7754772 - 7754844
Alignment:
Q  375 ggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgactttttt 447  Q
    ||||||||||| |||||||||||| | ||  ||| |||||||||||| ||||||||||||| |||||||||||    
T  7754772 ggcctttaaatagtaacttatcatgaaaatatgtctaatcaatgcatcggaaatcgaaatcgttgactttttt 7754844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 377 - 460
Target Start/End: Complemental strand, 4033132 - 4033050
Alignment:
Q  377 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    ||||||||||  || ||||||| | ||  |||||||||| ||||| |||||||||||||||||| |||||||||||||||||||    
T  4033132 cctttaaatgtaaatttatcatgaaaatgtgtgtaatca-tgcatcggaaatcgaaatctttgatttttttataaaataatttc 4033050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 40546398 - 40546348
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 458  Q
    |||||||||||||| |||||||||||| ||||||||||||| |||||||||    
T  40546398 tgtaatcaatgcattggaaatcgaaatatttgacttttttaaaaaataatt 40546348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 374 - 508
Target Start/End: Original strand, 54911999 - 54912133
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 473  Q
    |||||| ||||||  |||||||||| | ||  ||||||||||||||||  ||||| ||||| ||| ||||| |||||||||| |||        | |||     
T  54911999 aggcctataaatgacaacttatcatgaaaatatgtgtaatcaatgcatccgaaattgaaatatttaactttgttataaaatagtttattcttttggaatt 54912098  T
Q  474 cttaaagagtgcctcgggggcactcgttaacaaga 508  Q
    |||||||||||| |||||| |||||||||||||||    
T  54912099 cttaaagagtgcttcggggacactcgttaacaaga 54912133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 513
Target Start/End: Complemental strand, 28434581 - 28434477
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaag 507  Q
    |||||||||||||| | ||||| |||| ||||||||||| || |||||||||         |||||||||||||||| | |||| |||||||||||||||    
T  28434581 tgtaatcaatgcatcgaaaatcaaaatatttgacttttt-atgaaataatttattctcttaaaatccttaaagagtgtcccgggagcactcgttaacaag 28434483  T
Q  508 accctt 513  Q
    ||||||    
T  28434482 accctt 28434477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 408 - 459
Target Start/End: Complemental strand, 55110098 - 55110047
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 459  Q
    |||||||||||||| | |||||||||| ||||| ||||||||||||||||||    
T  55110098 tgtaatcaatgcattgaaaatcgaaatatttgatttttttataaaataattt 55110047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 37708442 - 37708405
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccc 511  Q
    |||||||||||||||||||||||| |||||||||||||    
T  37708442 cttaaagagtgcctcgggggcacttgttaacaagaccc 37708405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 474 - 514
Target Start/End: Complemental strand, 52309021 - 52308981
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagacccttt 514  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  52309021 cttaaagagtgccccgggggcactcgttaacaagactcttt 52308981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 509
Target Start/End: Original strand, 4305240 - 4305278
Alignment:
Q  471 atccttaaagagtgcctcgggggcactcgttaacaagac 509  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  4305240 atccttaaagagtgccccaggggcactcgttaacaagac 4305278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 378 - 460
Target Start/End: Original strand, 30687084 - 30687166
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    ||||||||| ||| ||||||| | ||  ||||||||||||||||   ||||| || ||||||| |||||||||| ||||||||    
T  30687084 ctttaaatgataatttatcatgaaaatatgtgtaatcaatgcatcaaaaatcaaactctttgatttttttataacataatttc 30687166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 460
Target Start/End: Complemental strand, 38388785 - 38388731
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    |||||||||||||||  | ||||| |||| ||||||||||||||||| |||||||    
T  38388785 tgtgtaatcaatgcaatgaaaatcaaaatatttgacttttttataaattaatttc 38388731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 46711949 - 46711999
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 458  Q
    |||||||||||||| ||||||| |||| ||||||||||||| | |||||||    
T  46711949 tgtaatcaatgcattggaaatcaaaatgtttgacttttttaaagaataatt 46711999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 4305150 - 4305117
Alignment:
Q  472 tccttaaagagtgcctcgggggcactcgttaaca 505  Q
    ||||||||||||||| ||||||||||||||||||    
T  4305150 tccttaaagagtgccccgggggcactcgttaaca 4305117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 512
Target Start/End: Complemental strand, 17517557 - 17517520
Alignment:
Q  475 ttaaagagtgcctcgggggcactcgttaacaagaccct 512  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  17517557 ttaaagagtgccccgggagcactcgttaacaagaccct 17517520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 459
Target Start/End: Original strand, 19898135 - 19898188
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 459  Q
    |||||||||||||||| | |||| ||||| ||||| |||| |||||||||||||    
T  19898135 tgtgtaatcaatgcattgaaaattgaaatatttgatttttatataaaataattt 19898188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 512
Target Start/End: Complemental strand, 29612024 - 29611987
Alignment:
Q  475 ttaaagagtgcctcgggggcactcgttaacaagaccct 512  Q
    |||||||||| | |||||||||||||||||||||||||    
T  29612024 ttaaagagtgtcccgggggcactcgttaacaagaccct 29611987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 30463992 - 30464044
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    ||||||||||||||   |||| ||||| ||||||||||||||| |||||||||    
T  30463992 tgtaatcaatgcattaaaaattgaaatgtttgacttttttatagaataatttc 30464044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 53433221 - 53433273
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    |||||||||||||| | ||||  |||| ||||||||||||||| |||||||||    
T  53433221 tgtaatcaatgcatcgaaaattaaaatatttgacttttttatagaataatttc 53433273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 374 - 513
Target Start/End: Complemental strand, 31206415 - 31206276
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 473  Q
    |||||||||||| |||| ||||||||| ||  |||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||         ||||    
T  31206415 aggcctttaaatagtaatttatcataaaaatatgtgtaatcaatgcatcggaaatcaaaatatttgatttttttataaaataatttctactttttgaatc 31206316  T
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    |||||||||| ||||| ||| |||||||||||||||||||    
T  31206315 cttaaagagtacctcgtggggactcgttaacaagaccctt 31206276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 378 - 458
Target Start/End: Complemental strand, 38956985 - 38956905
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 458  Q
    ||||||||| ||||||||||| | ||  |||||||||||||||| |||||||||||| ||||||||||||||||| |||||    
T  38956985 ctttaaatgataacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgacttttttataaattaatt 38956905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 374 - 460
Target Start/End: Original strand, 5020055 - 5020139
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    |||||||||||||||||||| |||| | ||  ||||||||||||| || |||||| ||||||||||||||||||||||||| |||||    
T  5020055 aggcctttaaatggtaacttgtcatgaaaa--tgtgtaatcaatgtatcggaaattgaaatctttgacttttttataaaattatttc 5020139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 378 - 459
Target Start/End: Original strand, 5217763 - 5217844
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 459  Q
    ||||| ||||||| ||||||||| ||  |||||||||||| ||| |||||||||||| ||||||||||||||||||| ||||    
T  5217763 ctttatatggtaatttatcataaaaatatgtgtaatcaatacatcggaaatcgaaatatttgacttttttataaaatcattt 5217844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 486
Target Start/End: Original strand, 45368729 - 45368836
Alignment:
Q  379 tttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaa 478  Q
    |||||||||||||||||||| | ||  ||| |||||| ||||| | |||| ||||| ||| |||||||||||||||||||||       | |||||||||    
T  45368729 tttaaatggtaacttatcatgaaaatatgtataatcattgcatcgaaaattgaaatatttaacttttttataaaataatttctttttttggaatccttaa 45368828  T
Q  479 agagtgcc 486  Q
    ||||||||    
T  45368829 agagtgcc 45368836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 514
Target Start/End: Complemental strand, 28207629 - 28207589
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagacccttt 514  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  28207629 cttaaagagtgtctcgggggcactcgttaacaagacccttt 28207589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 512
Target Start/End: Original strand, 7262119 - 7262161
Alignment:
Q  470 aatccttaaagagtgcctcgggggcactcgttaacaagaccct 512  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  7262119 aatccttaaagagtgccctgggggcactcgttaacaagaccct 7262161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 513
Target Start/End: Original strand, 1876583 - 1876622
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  1876583 cttaaagagtgccccgggggcactcgttaacaagaacctt 1876622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 475 - 514
Target Start/End: Original strand, 18808868 - 18808907
Alignment:
Q  475 ttaaagagtgcctcgggggcactcgttaacaagacccttt 514  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  18808868 ttaaagagtgccccgggagcactcgttaacaagacccttt 18808907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 513
Target Start/End: Original strand, 20279656 - 20279695
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  20279656 cttaaagagtgccccgggggcacttgttaacaagaccctt 20279695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 513
Target Start/End: Original strand, 21066283 - 21066322
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  21066283 cttaaagagtgccccgggggcacttgttaacaagaccctt 21066322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 513
Target Start/End: Complemental strand, 24869418 - 24869380
Alignment:
Q  475 ttaaagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  24869418 ttaaagagtgccacaggggcactcgttaacaagaccctt 24869380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 512
Target Start/End: Complemental strand, 31265002 - 31264964
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccct 512  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  31265002 cttaaagagtgccacaggggcactcgttaacaagaccct 31264964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 513
Target Start/End: Original strand, 7574278 - 7574319
Alignment:
Q  472 tccttaaagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    |||||||| |||||| |||| |||||||||||||||||||||    
T  7574278 tccttaaatagtgccccgggagcactcgttaacaagaccctt 7574319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 505
Target Start/End: Original strand, 11995213 - 11995245
Alignment:
Q  473 ccttaaagagtgcctcgggggcactcgttaaca 505  Q
    |||||||||||||| ||||||||||||||||||    
T  11995213 ccttaaagagtgccccgggggcactcgttaaca 11995245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 505
Target Start/End: Original strand, 41385368 - 41385400
Alignment:
Q  473 ccttaaagagtgcctcgggggcactcgttaaca 505  Q
    |||||||||||||| ||||||||||||||||||    
T  41385368 ccttaaagagtgccccgggggcactcgttaaca 41385400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 512
Target Start/End: Original strand, 43446208 - 43446248
Alignment:
Q  472 tccttaaagagtgcctcgggggcactcgttaacaagaccct 512  Q
    |||||||  ||||||||||||||||| ||||||||||||||    
T  43446208 tccttaactagtgcctcgggggcactagttaacaagaccct 43446248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 379 - 510
Target Start/End: Original strand, 20683003 - 20683134
Alignment:
Q  379 tttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaa 478  Q
    |||| ||||||||||||||||| ||  |||||||||||||||| |||||||||||| ||||| |||||||||||||  ||||       | |||||||||    
T  20683003 tttatatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgatttttttataaaatcttttcttcttttggaatccttaa 20683102  T
Q  479 agagtgcctcgggggcactcgttaacaagacc 510  Q
    |||||| | |||||||||||||||||||||||    
T  20683103 agagtgtcccgggggcactcgttaacaagacc 20683134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 374 - 512
Target Start/End: Original strand, 18053019 - 18053156
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagt-tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaat 472  Q
    ||||||||||| ||||| ||||||| | |||| ||| |||||||||||| ||||||| |||| |||||||||||||||||||||||||       |||||    
T  18053019 aggcctttaaa-ggtaatttatcatga-aagtatgtataatcaatgcatcggaaatcaaaatatttgacttttttataaaataatttcttcttttgaaat 18053116  T
Q  473 ccttaaagagtgcctcgggggcactcgttaacaagaccct 512  Q
    |||||||||||| | | ||  |||||||||||||||||||    
T  18053117 ccttaaagagtgtcccaggaacactcgttaacaagaccct 18053156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 380 - 507
Target Start/End: Original strand, 34546275 - 34546402
Alignment:
Q  380 ttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaa 479  Q
    ||||||| ||||||||||| | ||  ||||||||||||||||  ||||||||| | ||||||||||||||||| |||||||       | |||||| |||    
T  34546275 ttaaatgataacttatcatgaaaatgtgtgtaatcaatgcatcagaaatcgaagtatttgacttttttataaattaatttcttcatttggaatcctcaaa 34546374  T
Q  480 gagtgcctcgggggcactcgttaacaag 507  Q
    ||||||  | ||||||||||||||||||    
T  34546375 gagtgctccaggggcactcgttaacaag 34546402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 374 - 509
Target Start/End: Original strand, 44941082 - 44941216
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 473  Q
    ||||||||||||||||| ||||||  | ||  | |||||||||||||| |||||||||||||||| |||||||||||| ||| ||||         ||||    
T  44941082 aggcctttaaatggtaatttatcaggaaaatatatgtaatcaatgcatcggaaatcgaaatctttaacttttttataacatactttcttcttttagaatc 44941181  T
Q  474 cttaaagagtgcctcgggggcactcgttaacaagac 509  Q
    ||||||||||| |||  |||||||||||||||||||    
T  44941182 cttaaagagtgtctc-agggcactcgttaacaagac 44941216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 374 - 457
Target Start/End: Original strand, 42945015 - 42945098
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataat 457  Q
    |||||||||||| |||| ||||||||| ||  |||||||||||||||  |||||||||||| ||||| ||||| ||||||||||    
T  42945015 aggcctttaaatagtaaattatcataaaaatatgtgtaatcaatgcactggaaatcgaaatatttgagtttttaataaaataat 42945098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 378 - 512
Target Start/End: Original strand, 8773678 - 8773812
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctta 477  Q
    ||||||| ||||||||| ||| | ||  | ||||||||||||||  |||||| |||| |||||||||||||||||||||||||         |||| |||    
T  8773678 ctttaaagggtaacttaacatgaaaatatatgtaatcaatgcatcagaaatcaaaatatttgacttttttataaaataatttcttcttttagaatcttta 8773777  T
Q  478 aagagtgcctcgggggcactcgttaacaagaccct 512  Q
    ||||||||| || | | ||||||||||||||||||    
T  8773778 aagagtgccccgagagtactcgttaacaagaccct 8773812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 406 - 460
Target Start/End: Original strand, 2825989 - 2826043
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    |||||||||||||||| |||||||||||| ||| ||||||||| |||||||||||    
T  2825989 tgtgtaatcaatgcattggaaatcgaaatattttacttttttaaaaaataatttc 2826043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 406 - 460
Target Start/End: Original strand, 4238358 - 4238412
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    |||||||||||||||| | |||||||||| ||||| |||||||||||||||||||    
T  4238358 tgtgtaatcaatgcatcgaaaatcgaaatatttgatttttttataaaataatttc 4238412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 460
Target Start/End: Complemental strand, 8789957 - 8789875
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    ||||||| ||||||||| ||| | ||  ||||||||||||||||  |||||| |||| ||| |||||||||||||||||||||    
T  8789957 ctttaaagggtaacttaacatgaaaatatgtgtaatcaatgcatcagaaatcaaaatatttaacttttttataaaataatttc 8789875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 509
Target Start/End: Original strand, 6761761 - 6761862
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaag 507  Q
    |||||||||||||| |||||| ||||| ||||||||||||||| ||| ||||        | ||| |||||||||||||||||  ||||| |||||||||    
T  6761761 tgtaatcaatgcattggaaattgaaatatttgacttttttatagaatgatttattcttttggaatgcttaaagagtgcctcggaagcacttgttaacaag 6761860  T
Q  508 ac 509  Q
    ||    
T  6761861 ac 6761862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 512
Target Start/End: Complemental strand, 3882689 - 3882583
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaaca 505  Q
    |||||||||||||||| | ||| |||||| |||||| |||||| | ||||||| |         ||| ||||||||||||| || |||||||||||||||    
T  3882689 tgtgtaatcaatgcattgaaaaccgaaatatttgacctttttaaagaataattgcttattttagaatgcttaaagagtgccccgagggcactcgttaaca 3882590  T
Q  506 agaccct 512  Q
    |||||||    
T  3882589 agaccct 3882583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 406 - 511
Target Start/End: Complemental strand, 2888981 - 2888876
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaaca 505  Q
    |||||| ||||| ||| |||||||||||| ||| ||||||||| ||||||||| |       ||| | ||||||||||| || || ||||||| ||||||    
T  2888981 tgtgtagtcaatacattggaaatcgaaatatttaacttttttaaaaaataattacaaattttgaagtgcttaaagagtgtcttggtggcactcattaaca 2888882  T
Q  506 agaccc 511  Q
    ||||||    
T  2888881 agaccc 2888876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 513
Target Start/End: Original strand, 5962066 - 5962105
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  5962066 cttaaagagtgtctcggaggcactcgttaacaagaccctt 5962105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 513
Target Start/End: Original strand, 15816805 - 15816844
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  15816805 cttaaagagtgccctgggggcactcgttaacaagaccctt 15816844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 475 - 514
Target Start/End: Complemental strand, 25622538 - 25622499
Alignment:
Q  475 ttaaagagtgcctcgggggcactcgttaacaagacccttt 514  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  25622538 ttaaagagtgcatcgggagcactcgttaacaagacccttt 25622499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 13538401 - 13538363
Alignment:
Q  474 cttaaagagtgcc-tcgggggcactcgttaacaagaccc 511  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  13538401 cttaaagagtgccctcgggggcactcgttaacaagaccc 13538363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 407 - 445
Target Start/End: Complemental strand, 19495275 - 19495237
Alignment:
Q  407 gtgtaatcaatgcataggaaatcgaaatctttgactttt 445  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  19495275 gtgtaatcaatgcattggaaatcgaaatatttgactttt 19495237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 459
Target Start/End: Original strand, 6334709 - 6334758
Alignment:
Q  410 taatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 459  Q
    |||||||||||| |||||| |||| ||||||| |||||| ||||||||||    
T  6334709 taatcaatgcattggaaattgaaaactttgacatttttaaaaaataattt 6334758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 458
Target Start/End: Complemental strand, 8964466 - 8964413
Alignment:
Q  405 ttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 458  Q
    ||||||||||||||||| |||||| ||||| ||| ||||||||| | |||||||    
T  8964466 ttgtgtaatcaatgcattggaaattgaaatattttacttttttaaagaataatt 8964413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 512
Target Start/End: Complemental strand, 32859789 - 32859752
Alignment:
Q  475 ttaaagagtgcctcgggggcactcgttaacaagaccct 512  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  32859789 ttaaagagtgccctgggggcactcgttaacaagaccct 32859752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 470 - 514
Target Start/End: Complemental strand, 43745633 - 43745589
Alignment:
Q  470 aatccttaaagagtgcctcgggggcactcgttaacaagacccttt 514  Q
    |||||||||||||||||    ||||||||||||||||||||||||    
T  43745633 aatccttaaagagtgccctaagggcactcgttaacaagacccttt 43745589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 378 - 514
Target Start/End: Complemental strand, 47507711 - 47507575
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctta 477  Q
    |||||||||||||||| |||| | ||  |||||||||||| ||| |||||| ||||||||||| ||||||||||||| |||||         ||||||||    
T  47507711 ctttaaatggtaacttctcatgaaaaaatgtgtaatcaatacatcggaaattgaaatctttgatttttttataaaattatttcttcttttagaatcctta 47507612  T
Q  478 aagagtgcctcgggggcactcgttaacaagacccttt 514  Q
    ||||||||| ||| | |||||||||||||||||||||    
T  47507611 aagagtgccccggagacactcgttaacaagacccttt 47507575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 379 - 460
Target Start/End: Complemental strand, 48137883 - 48137802
Alignment:
Q  379 tttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    ||||||| |||| ||||||||| ||  |||||||||||||||| | ||||| |||| |||||||||||||||||||||||||    
T  48137883 tttaaatagtaatttatcataaaaatatgtgtaatcaatgcatcgaaaatcaaaatatttgacttttttataaaataatttc 48137802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 374 - 505
Target Start/End: Complemental strand, 38452276 - 38452146
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 473  Q
    ||||||||||| | ||| |||| || | ||  ||||||| |||||||| |||||| ||||| |||||||||||||||||||||||||        |||||    
T  38452276 aggcctttaaaagataatttattatgaaaatatgtgtaaccaatgcatcggaaattgaaatatttgacttttttataaaataatttcttctttttaaatc 38452177  T
Q  474 cttaaagagtgcctcgggggcactcgttaaca 505  Q
    |||||||| ||  |||||||||||||||||||    
T  38452176 cttaaagaatg-ttcgggggcactcgttaaca 38452146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 410 - 513
Target Start/End: Complemental strand, 8170100 - 8169997
Alignment:
Q  410 taatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaagac 509  Q
    ||||||||| || ||||||| |||| |||||||||||||||||||||||||       | |||||||||||||||   |||| | ||| |||||||||||    
T  8170100 taatcaatgtatcggaaatcaaaatatttgacttttttataaaataatttcttcttttggaatccttaaagagtgttccgggagtacttgttaacaagac 8170001  T
Q  510 cctt 513  Q
    ||||    
T  8170000 cctt 8169997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 460
Target Start/End: Complemental strand, 43670512 - 43670430
Alignment:
Q  378 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    ||||||||||||| ||||||||| ||  | |||||||| ||||| | ||||| |||||||||| ||||||||||||| |||||    
T  43670512 ctttaaatggtaatttatcataaaaacatatgtaatcagtgcatcgaaaatcaaaatctttgatttttttataaaattatttc 43670430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 374 - 507
Target Start/End: Original strand, 30412921 - 30413053
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 473  Q
    |||||||||||| |||| ||||||  | ||  ||| |||||||||||| || ||||||||| ||||||||| | |||||||| ||||       ||||||    
T  30412921 aggcctttaaatagtaatttatcacgaaaatatgtataatcaatgcatcgggaatcgaaatatttgactttatcataaaatagtttcttcttttgaaatc 30413020  T
Q  474 cttaaagagtgcctcgggggcactcgttaacaag 507  Q
    |||||||||| | || ||| ||||||||||||||    
T  30413021 cttaaagagtacatc-gggacactcgttaacaag 30413053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 406 - 514
Target Start/End: Original strand, 10031954 - 10032062
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaaca 505  Q
    |||||||||||||||| |||||||||||  ||| ||||||| | ||||||||| |       | ||| ||||||||||| | |||||||||||||||||     
T  10031954 tgtgtaatcaatgcattggaaatcgaaacatttaactttttaaaaaaataattactaattttggaatgcttaaagagtgtcccgggggcactcgttaacg 10032053  T
Q  506 agacccttt 514  Q
    |||| ||||    
T  10032054 agacacttt 10032062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 460
Target Start/End: Complemental strand, 2964146 - 2964068
Alignment:
Q  382 aaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    |||| |||||||||||||| ||  ||||||||||||| || | ||||| |||| ||| | |||||||||||||||||||    
T  2964146 aaatagtaacttatcataaaaatatgtgtaatcaatgtatcgaaaatcaaaatttttaatttttttataaaataatttc 2964068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 460
Target Start/End: Complemental strand, 5248168 - 5248114
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    ||||||||||||||||    ||||||||| |||||||||||||||||||||||||    
T  5248168 tgtgtaatcaatgcatcaataatcgaaatatttgacttttttataaaataatttc 5248114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 459
Target Start/End: Complemental strand, 2741246 - 2741193
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 459  Q
    |||||||||||||||| ||||||| |||| ||||| ||||| ||||||||||||    
T  2741246 tgtgtaatcaatgcatcggaaatcaaaatatttgattttttaataaaataattt 2741193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 27123279 - 27123242
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccc 511  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  27123279 cttaaagagtgccccgggggcactcgttaacaagaccc 27123242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 406 - 458
Target Start/End: Complemental strand, 1360609 - 1360557
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 458  Q
    |||||||||||||||| |||||||||||  ||| ||||||||| |||||||||    
T  1360609 tgtgtaatcaatgcattggaaatcgaaacatttaacttttttaaaaaataatt 1360557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 474 - 514
Target Start/End: Original strand, 27766787 - 27766827
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagacccttt 514  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  27766787 cttaaagagtgccctgggggcactcgttaacaagacccttt 27766827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 474 - 514
Target Start/End: Original strand, 34299844 - 34299884
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagacccttt 514  Q
    |||||| |||||| |||||||||||||||||||||||||||    
T  34299844 cttaaaaagtgccccgggggcactcgttaacaagacccttt 34299884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 406 - 486
Target Start/End: Complemental strand, 42493782 - 42493701
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttat-aaaataatttcnnnnnnngaaatccttaaagagtgcc 486  Q
    |||||||||||||||| | ||||| |||| |||||||||||||| |||||||||||       | |||||||||||||||||    
T  42493782 tgtgtaatcaatgcatcgaaaatcaaaatatttgacttttttatcaaaataatttcttcttttggaatccttaaagagtgcc 42493701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 460
Target Start/End: Complemental strand, 16878809 - 16878726
Alignment:
Q  377 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    ||||||||| |||||||  ||||| ||  | |||||||||||||| |  ||||||||| ||| |||||||||| ||||||||||    
T  16878809 cctttaaatagtaactttgcataaaaatatttgtaatcaatgcattgagaatcgaaatatttaacttttttatgaaataatttc 16878726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 505
Target Start/End: Complemental strand, 17157770 - 17157739
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaaca 505  Q
    ||||||||||||||||||||||||||||||||    
T  17157770 cttaaagagtgcctcgggggcactcgttaaca 17157739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 455
Target Start/End: Original strand, 42890298 - 42890345
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaata 455  Q
    ||||||||||| || |||||||||||| ||||||||||||| ||||||    
T  42890298 tgtaatcaatgtattggaaatcgaaatgtttgacttttttaaaaaata 42890345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 510
Target Start/End: Original strand, 7596181 - 7596283
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgact-tttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaa 506  Q
    |||||||||||||| |||||| ||||| ||||||| ||||||| ||||||||||        |||| ||||||||||||| ||| | ||||| |||||||    
T  7596181 tgtaatcaatgcattggaaattgaaatttttgactctttttatgaaataatttcttcttttaaaatgcttaaagagtgcc-cggagacactcattaacaa 7596279  T
Q  507 gacc 510  Q
    ||||    
T  7596280 gacc 7596283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 28770482 - 28770445
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccc 511  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  28770482 cttaaagagtgccccggaggcactcgttaacaagaccc 28770445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 511
Target Start/End: Original strand, 45375444 - 45375485
Alignment:
Q  470 aatccttaaagagtgcctcgggggcactcgttaacaagaccc 511  Q
    ||||||||||||||||| ||| |||||||||||| |||||||    
T  45375444 aatccttaaagagtgccccggaggcactcgttaataagaccc 45375485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 443
Target Start/End: Original strand, 46684557 - 46684626
Alignment:
Q  374 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgactt 443  Q
    ||||||||||||||||| ||||||| | ||  | |||||||||||| | | |||||||||| ||||||||    
T  46684557 aggcctttaaatggtaatttatcatgaaaatatatgtaatcaatgcgtcgaaaatcgaaatatttgactt 46684626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 514
Target Start/End: Original strand, 14651485 - 14651525
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagacccttt 514  Q
    |||||| |||||| ||||||||||||||| |||||||||||    
T  14651485 cttaaaaagtgccccgggggcactcgttagcaagacccttt 14651525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 514
Target Start/End: Complemental strand, 17302896 - 17302856
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagacccttt 514  Q
    |||||||||||   |||||||||||||||||||||||||||    
T  17302896 cttaaagagtgtaccgggggcactcgttaacaagacccttt 17302856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 380 - 460
Target Start/End: Complemental strand, 34681791 - 34681711
Alignment:
Q  380 ttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 460  Q
    |||||| ||||||| | |||| || ||||||| | ||||||| |||||| ||| | |||||||||| || |||||||||||    
T  34681791 ttaaatagtaactttttataaaaacttgtgtatttaatgcattggaaattgaactatttgacttttgtaaaaaataatttc 34681711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 407 - 512
Target Start/End: Original strand, 36015039 - 36015144
Alignment:
Q  407 gtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaa 506  Q
    |||||||||||  || | |||| || || ||||| |||||||||||||||||||       |||||||||||||| || | ||| | || ||||||||||    
T  36015039 gtgtaatcaataaattgaaaattgacatatttgatttttttataaaataatttctttttttgaaatccttaaagaatgtcccggagacattcgttaacaa 36015138  T
Q  507 gaccct 512  Q
    ||||||    
T  36015139 gaccct 36015144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 471 - 507
Target Start/End: Complemental strand, 46726144 - 46726109
Alignment:
Q  471 atccttaaagagtgcctcgggggcactcgttaacaag 507  Q
    |||||||||||||||| ||||||||||||||||||||    
T  46726144 atccttaaagagtgcc-cgggggcactcgttaacaag 46726109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 377 - 504
Target Start/End: Original strand, 12383022 - 12383149
Alignment:
Q  377 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctt 476  Q
    ||||||||| |||| ||||||||| ||  ||| |||||||||||| ||||||| |||| ||| |||||||||||||||||||||       ||||| |||    
T  12383022 cctttaaatagtaatttatcataaaaatatgtataatcaatgcatcggaaatcaaaatatttaacttttttataaaataatttctccttttgaaattctt 12383121  T
Q  477 aaagagtgcctcgggggcactcgttaac 504  Q
    |||||||||| |  | ||||||||||||    
T  12383122 aaagagtgccccaagagcactcgttaac 12383149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 506
Target Start/End: Complemental strand, 7465548 - 7465451
Alignment:
Q  408 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaa 506  Q
    |||||||||||||| |||||| ||||| ||||||||||||||  || ||||||         |||||||||| |||||| |||||||||||||||||||    
T  7465548 tgtaatcaatgcatcggaaattgaaatatttgacttttttatggaacaatttcttctttaagaatccttaaaaagtgcc-cgggggcactcgttaacaa 7465451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 509
Target Start/End: Original strand, 31702747 - 31702874
Alignment:
Q  380 ttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaa 479  Q
    |||||| ||||||| | |||| ||  ||||||||||||||||  |||||  ||||  || |||||||||||||||||||||       ||||| ||||||    
T  31702747 ttaaatagtaactttttataaaaatatgtgtaatcaatgcattagaaattaaaatacttaacttttttataaaataatttcttcttttgaaattcttaaa 31702846  T
Q  480 gagtgcctcgggggcactcgttaacaagac 509  Q
    ||||||| |  || ||||||||||||||||    
T  31702847 gagtgcccc--ggacactcgttaacaagac 31702874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 513
Target Start/End: Complemental strand, 35229299 - 35229258
Alignment:
Q  472 tccttaaagagtgcctcgggggcactcgttaacaagaccctt 513  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  35229299 tccttaaagagtgtcccgggggcactcgttaacaagaccctt 35229258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 514
Target Start/End: Original strand, 22696000 - 22696077
Alignment:
Q  437 ttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaagacccttt 514  Q
    |||| |||||||||||||||||||       | |||||||||||||||| || | ||||||||||||||||| |||||    
T  22696000 ttgatttttttataaaataatttcttcttttggaatccttaaagagtgcatcagaggcactcgttaacaagatccttt 22696077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 460
Target Start/End: Complemental strand, 35241509 - 35241430
Alignment:
Q  382 aaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgactt-ttttataaaataatttc 460  Q
    ||||||||||||||||||| ||  ||| ||||||||||||  |||||| |||| ||| | || |||||||||||||||||    
T  35241509 aaatggtaacttatcataaaaatatgtataatcaatgcatcagaaatcaaaatatttaatttcttttataaaataatttc 35241430  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 512
Target Start/End: Complemental strand, 31854799 - 31854761
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagaccct 512  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  31854799 cttaaagagtgtctcgggggcactcgttaataagaccct 31854761  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 508
Target Start/End: Original strand, 34232057 - 34232090
Alignment:
Q  475 ttaaagagtgcctcgggggcactcgttaacaaga 508  Q
    |||||||||||||| |||||||||||||||||||    
T  34232057 ttaaagagtgcctccggggcactcgttaacaaga 34232090  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 510
Target Start/End: Original strand, 4810628 - 4810664
Alignment:
Q  474 cttaaagagtgcctcgggggcactcgttaacaagacc 510  Q
    |||||| |||||||||||||||||| |||||||||||    
T  4810628 cttaaatagtgcctcgggggcactctttaacaagacc 4810664  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 483
Target Start/End: Complemental strand, 12307898 - 12307821
Alignment:
Q  406 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagt 483  Q
    |||||||| |||| || | ||||  |||| |||||||||||||||||||||||||       ||||||||||||||||    
T  12307898 tgtgtaattaatgtattgaaaattaaaatatttgacttttttataaaataatttcttcttttgaaatccttaaagagt 12307821  T

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Target: scaffold0182 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 512
Target Start/End: Complemental strand, 19701 - 19657
Alignment:
Q  468 gaaatccttaaagagtgcctcgggggcactcgttaacaagaccct 512  Q
    |||||||||||||||||||    ||||||||||||||||||||||    
T  19701 gaaatccttaaagagtgccctaagggcactcgttaacaagaccct 19657  T

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