View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8941_low_1 (Length: 1472)
Name: NF8941_low_1
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_low_1 |
 | |
|
| [»] scaffold0128 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 976; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 976; E-Value: 0
Query Start/End: Original strand, 457 - 1451
Target Start/End: Complemental strand, 42358019 - 42357027
Alignment:
| Q |
457 |
catttcttcagaggttataaaataaccatttcacaatctttctagttggaaaaatgaagcaaaaacaaatgttgttatagattttgacacagctaataag |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42358019 |
catttcttcagaggttataaaataaccatttcacaatctttctagttggaaaaatgaagcaaaaacaaatgttgttatagattttgacacagctaataag |
42357920 |
T |
|
| Q |
557 |
ctttacagtcaataaaatgagatatgatagttacattaacattacatcaaagttgcatcaaagaatgaaagctccactaattctaaaccatagctctcag |
656 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42357919 |
ctttacagtcaataaaatgagat--gatagttacattaacattacatcaaagttgcatcaaagaatgaaagctccactaattctaaaccatagctctcag |
42357822 |
T |
|
| Q |
657 |
aagatacaatacaattacaaaactaaataatgtcacatttgcattcataatcaaactcaaatgcagaaaaagttaaacaaaaaattacattcaacactaa |
756 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42357821 |
aagatacaatacaattacaaaactaaataatgtcacatttgcattcataatcaaactcaaatgcagaaaaagttaaacaaaaaattacattcaacactaa |
42357722 |
T |
|
| Q |
757 |
ttaacgtagccactaataatagcatattctttgcaacataatcattgcttcctccaaaattagaagttgtgttgcaagaagagtctctcttgaggagaag |
856 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42357721 |
ttaacgtagccactaataatatcatattctttgcaacataatcattgcttcctccaaaattagaagttgtgttgcaagaagagtctctcttgaggagaag |
42357622 |
T |
|
| Q |
857 |
caggaccaatttcttcctcaagacttctcaaaacatcacctccaccaccaacaacattaccatagtttcttccttcaacaatcttcacttcaacttcacc |
956 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42357621 |
caggaccaatttcttcctcaagacttctcaaaacatcacctccaccaccaacaacattaccatagtttcttccttcaacaatcttcacttcaacttcacc |
42357522 |
T |
|
| Q |
957 |
ttctgaccctgaagactttcttctttgagaagaagtaacacttggaaaagttatccaagaaggtgctctaaactcaaacctttgatcttcaccttcgact |
1056 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42357521 |
ttctgaccctgaagactttcttctttgagaagaagtaacacttggaaaagttatccaagaaggtgctctaaactcaaacctttgatcttcaccttcgact |
42357422 |
T |
|
| Q |
1057 |
acatcgatttctgaagctgaccgatttgaagacctttgagatgttttcttatgcattctattacttcctagaacaacctcagttggcaaaattggttgat |
1156 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42357421 |
acatcgatttctgaagccgaccgatttgaagacctttgagatgttttcttatgcattctattacttcctagaacaacctcagttggcaaaattggttgat |
42357322 |
T |
|
| Q |
1157 |
caatacaaggacttcccattaacattgctaaagctctttccaaacttgttgttactttgtccattgaaggcctatctttacctctcattctcacacattt |
1256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42357321 |
caatacaaggacttcccattaacattgctaaagctctttccaaacttgttgttactttgtccattgaaggcctatctttacctctcattctcacacattt |
42357222 |
T |
|
| Q |
1257 |
acaagcaacatttgctatccttctcaatgcttctatatcagaaggtggtttcaaacaagggtctaaaatcgaagctatatcgcccgattttattaatgga |
1356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42357221 |
acaagcaacatttgctatccttctcaatgcttctatatcagaaggtggtttcaaacaagggtctaaaatcgaagctatatcgcccgattttattaatgga |
42357122 |
T |
|
| Q |
1357 |
accgaccattgaacaatgttaccttcttcatattgcatatcaatagcttttctaccacttagaatttctaatagtagaacaccaaagctataaac |
1451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42357121 |
accgaccattgaacaatgttaccttcttcatattgcatatcaatagcttttctaccacttagaatttctaatagtagaacaccaaagctataaac |
42357027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 5 - 401
Target Start/End: Complemental strand, 42358495 - 42358101
Alignment:
| Q |
5 |
agtggagaagcagagaggatactgaaataagaataaggaaatgcactttcaatgtgtttttcttatcaaacaacttaagagcactcttgtatcttgtcca |
104 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42358495 |
agtggataagcagagaggatactgaaataagaataaggaaatgcactttcaatgtgtttttcttatcaaacaacttaagagcactcttgtatcttgtcca |
42358396 |
T |
|
| Q |
105 |
ttccttatcttagcagagaaaacaccttcacgaaaagataaaattatacatccactcaaggaaaggaatgtaaattcaactccgtattacttggccctga |
204 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42358395 |
ttccttatcttactagagaaaacaccttcacgaaaagataaaattatacatctactcaaggaaaggaatgtaaattcaactccgtattacttggccctga |
42358296 |
T |
|
| Q |
205 |
aacactcagagaatcaaaattgtctcataaatgaactttataagtcatttattacattttatattacgttatatatataagcggatgatttcttttaaca |
304 |
Q |
| |
|
| || | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
42358295 |
agca--ccgagaatcaaaattgtctcataaatgaactttataagtcatttattacattgtatattacgttatatacataagaggatgatttctttcaaca |
42358198 |
T |
|
| Q |
305 |
acaagcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggcaaattatctttttgtattatat |
401 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42358197 |
ataagcccttatagctcagtggtagagcgccagtcttgtaaactggaggtccgtagttcgatcctgcgtgagggcaaatttcttttttgtattatat |
42358101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 5e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 5e-72
Query Start/End: Original strand, 970 - 1448
Target Start/End: Original strand, 25372090 - 25372559
Alignment:
| Q |
970 |
gactttcttctttgagaagaagtaacacttggaaaagttatccaagaaggtgctctaaactcaaacctttgatcttcaccttcgactacatcgatttctg |
1069 |
Q |
| |
|
|||||||||||||||||||| || ||||| || || |||||||| ||||||||||||| |||||||||| |||| ||| ||||| | |
|
|
| T |
25372090 |
gactttcttctttgagaagatgtgacactagggaatgttatccatgaaggtgctctaagctcaaaccttggatcctca---------------atttcag |
25372174 |
T |
|
| Q |
1070 |
aagctgaccgatttgaagacctttgagatgttttcttatgcattctattacttcctagaacaacctcagttggcaaaattggttgatcaatacaaggact |
1169 |
Q |
| |
|
|| ||||| ||||||||| |||||||||| |||||| |||| |||||||||||||| ||||||||||| || ||||||||||||||||| || ||||| |
|
|
| T |
25372175 |
aaactgacatatttgaagatctttgagatggtttcttgtgcaatctattacttcctaaaacaacctcagaaggtaaaattggttgatcaatgcatggact |
25372274 |
T |
|
| Q |
1170 |
tcccattaacattgctaaagctctttccaaacttgttgttactttgtccattgaaggcctatctttacctctcattctcacacatttacaagcaacattt |
1269 |
Q |
| |
|
|||||||||| || | | ||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
25372275 |
gcccattaacacagcaagacctctttccaaagctgttgttactttgtccattgaaggtctatcttttcctctcattctcacacatttacaagctacatta |
25372374 |
T |
|
| Q |
1270 |
gctatccttctcaatgcttctatatcagaaggtggtttcaaacaagggtctaaaatcgaagctatatcgcccgattttattaatggaaccgaccattgaa |
1369 |
Q |
| |
|
|||||| || |||||||||| | |||| ||||||||| | | || || ||||| | || |||||| || ||||| || || || || | ||||| || |
|
|
| T |
25372375 |
gctatctttttcaatgcttcaagatcatgaggtggtttaagaattggatccaaaattgcagatatatctcctgatttgatcaaaggcactgcccattcaa |
25372474 |
T |
|
| Q |
1370 |
caatgtta---ccttcttcatattg---catatcaatagcttttctaccacttagaatttctaatagtagaacaccaaagctata |
1448 |
Q |
| |
|
| |||||| |||||||||||||| ||| || |||||||||||||||||||||||||| || || ||||||||||| ||||| |
|
|
| T |
25372475 |
ctatgttattcccttcttcatattgcatcatgtcgatagcttttctaccacttagaatttccaagagaagaacaccaaaactata |
25372559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 7e-31
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 25371640 - 25371713
Alignment:
| Q |
309 |
gcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggcaaa |
382 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25371640 |
gcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggcaaa |
25371713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 33870913 - 33870985
Alignment:
| Q |
308 |
agcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca |
380 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33870913 |
agcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca |
33870985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 300 - 380
Target Start/End: Original strand, 2639494 - 2639574
Alignment:
| Q |
300 |
taacaacaagcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca |
380 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2639494 |
taacaagaagcccttatagctcagtggtagagcgccagtcttgtaaactggaggtccgtagttcgatcctgcgtgagggca |
2639574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 309 - 392
Target Start/End: Complemental strand, 9749283 - 9749200
Alignment:
| Q |
309 |
gcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggcaaattatcttttt |
392 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| || ||||| ||| ||||||| |
|
|
| T |
9749283 |
gcccctatagctcagtggtagagcgccagtcttgtaaactggaggtctgtagttcgatcctgcatgggggcagattttcttttt |
9749200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 5e-32; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 5e-32
Query Start/End: Original strand, 301 - 380
Target Start/End: Complemental strand, 41139315 - 41139236
Alignment:
| Q |
301 |
aacaacaagcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41139315 |
aacaacaagcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccatagttcgatcctgcgtgagggca |
41139236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 309 - 380
Target Start/End: Original strand, 33306146 - 33306217
Alignment:
| Q |
309 |
gcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca |
380 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33306146 |
gcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca |
33306217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 7e-28
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 1895547 - 1895619
Alignment:
| Q |
309 |
gcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggcaa |
381 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1895547 |
gcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccgcagttcgatcctgcgtgagggcaa |
1895619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 2e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 306 - 380
Target Start/End: Complemental strand, 22365668 - 22365594
Alignment:
| Q |
306 |
caagcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca |
380 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365668 |
caagcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca |
22365594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 306 - 380
Target Start/End: Complemental strand, 22361982 - 22361908
Alignment:
| Q |
306 |
caagcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca |
380 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22361982 |
caagcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtctgtagttcgatcctgcgtgagggca |
22361908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 6e-16
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 11474933 - 11474873
Alignment:
| Q |
309 |
gcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcct |
369 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
11474933 |
gcccctatagcttagtggtagagcgccagtcttgtaaactggaggtctgtagttcgatcct |
11474873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 7e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 7e-28
Query Start/End: Original strand, 309 - 381
Target Start/End: Complemental strand, 43046419 - 43046347
Alignment:
| Q |
309 |
gcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggcaa |
381 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43046419 |
gcccttatagctcagtggtagagcatcagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggcaa |
43046347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 43084839 - 43084770
Alignment:
| Q |
309 |
gcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgaggg |
378 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| |||||||| |
|
|
| T |
43084839 |
gcccttatagctcagtggtagagcatcagtcttttcaactgaaggtccgtagttcgatcctacgtgaggg |
43084770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 57; Significance: 4e-23; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 45597 - 45529
Alignment:
| Q |
312 |
cttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca |
380 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
45597 |
cttatagctcagtggtagagcgccagtcctgtaaactgaaggtccgtagttcaatccttcgtgagggca |
45529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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