View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8941_low_14 (Length: 562)
Name: NF8941_low_14
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 24 - 552
Target Start/End: Complemental strand, 35753967 - 35753420
Alignment:
| Q |
24 |
gtgtcatggagatcaggcttctttgcaccgctttaagaaaatgtgtggcttgtaaactatcaaattcctgaaaaaagagcatgattttgtgctgtttgaa |
123 |
Q |
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| T |
35753967 |
gtgtcatggagatcagggttctttgcaccgctttaagaaaatgtgtggcttgtaaactatcaaattcctgaaaaaagagcatgattttgtgctgtttgaa |
35753868 |
T |
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| Q |
124 |
tgtttgacat----------ttcggtttcttttagtgcatttgtcgggattcagtcacttgactatttatcttagaactgtctatgctttataagtacta |
213 |
Q |
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| T |
35753867 |
tgtttgacatacttcgttgattcggtttctttttgtgcatttgtcgggattcagtcacttgactatttatcttagaactgtctatgctttataagtacta |
35753768 |
T |
|
| Q |
214 |
cgtaagcaatatctctaggcgacgtgggactaaaccaactcggcgacc---tgctttattacggaaatgaaagcagacaatgtggtcaagtagtggacca |
310 |
Q |
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| T |
35753767 |
cgtaagcaatatctctaggcgatgtgggactaaaccaacgcggtgaccctgtgctttattacggcaatgaaagcagacaatgtggtcaagtagtggacca |
35753668 |
T |
|
| Q |
311 |
caagggcggccacaattaaggcggatttctcagaaactatttatggcatgtcttgattatcagtaattgtctttttattacaagttgatatttgatttcc |
410 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35753667 |
caagagcggccacaattaaggcggatttctcggaaactatttatggcatgtcttgattatcagtaattgtctttttattacaagttgatacttgatttcc |
35753568 |
T |
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| Q |
411 |
tttcgtgataggttgt------agaccctgcttttgagttttagcgagactgtgtcggggagatcaagcttgtttgcattgcattaagaaaaagtgtgtg |
504 |
Q |
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| T |
35753567 |
tttcgtgataggttgtagacgtagaccctgcttttgagttttagtgagactgtgtcggggagatcaagcttgtttgcattgcattaagaaaaagtgtgtg |
35753468 |
T |
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| Q |
505 |
tggcttgtaatctatctaattcctgaaatatgagcgtggttctgtgct |
552 |
Q |
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| T |
35753467 |
tggcttgtaatctatctaattcctgaaatatgagcgtggttttgtgct |
35753420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 35753509 - 35753403
Alignment:
| Q |
31 |
ggagatcaggcttctttgcaccgctttaagaaaa----tgtgtggcttgtaaactatcaaattcctgaaaaaagagcatgattttgtgctgtttgaatgt |
126 |
Q |
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|||||||| |||| |||||| || ||||||||| |||||||||||||| ||||| ||||||||||| | |||| || |||||||||| |||||||| |
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| T |
35753509 |
ggagatcaagcttgtttgcattgcattaagaaaaagtgtgtgtggcttgtaatctatctaattcctgaaatatgagcgtggttttgtgctgcttgaatgt |
35753410 |
T |
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| Q |
127 |
ttgacat |
133 |
Q |
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| T |
35753409 |
ttgacat |
35753403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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