View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8941_low_15 (Length: 534)
Name: NF8941_low_15
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 5 - 379
Target Start/End: Complemental strand, 25430924 - 25430549
Alignment:
| Q |
5 |
atccaatgcttaactccaaaactcatgtggtaacttcttttctttcatcataaacctagccatatcaagcatacttatatttgttctcttaacgagtgca |
104 |
Q |
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| T |
25430924 |
atccaatgcttaactccaaaactcatgtggtaacttcttttctttcatcataaacctagccatatcaagcatacttatatttgttctctcaacgagtgca |
25430825 |
T |
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| Q |
105 |
ttgtgctgaggagtatatcaagttgcgacttcatgtattattccg-tggctcgtgcaataagctgcaaattcttttaaagtgtattcttcacctcaattt |
203 |
Q |
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| T |
25430824 |
ttgtgctgaggagtatatcaagttgcgacttcatgtattattcccctggctcgtgcaataagctgcaaattcttttaaagtgtattcttcacctcaattt |
25430725 |
T |
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| Q |
204 |
ttcatgaaaatatgaagttgcttaccatattgtgttctcaactaatgctttaaattctttgtaaatttctaaagcattactctttgatcctatcagacat |
303 |
Q |
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| T |
25430724 |
gtcatgaaaatctgaagttgcttaccatattgtgttctcaactaatgctttaaattctttgtaaatttctaaagcattactctttgattctatcagacat |
25430625 |
T |
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| Q |
304 |
agccacaacatcttggaatattcatcaacaaaagtgataaagtgcatgttaccactatacgtaggtacctctatag |
379 |
Q |
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| T |
25430624 |
agccacaacatcttggaatattcatcaacaaaagtgataaagtgcatgttaccactatacgtaggtacctctatag |
25430549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 430 - 516
Target Start/End: Complemental strand, 25430551 - 25430465
Alignment:
| Q |
430 |
tagatttggattgaaagctaatctgggttgcttgcctagcaaacagatgctaatcgagtcttcaagaactttcatagtaagtgcacc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25430551 |
tagatttggattgaaagctaatctgggttgcttgcctagcaagcagatgctaatcgagtcttcaagaactttcatagtaagtgcacc |
25430465 |
T |
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