View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8941_low_17 (Length: 524)
Name: NF8941_low_17
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 34 - 413
Target Start/End: Complemental strand, 47269075 - 47268693
Alignment:
| Q |
34 |
gcagagacaagagaagggcatctgtttgagcagtatttttctcaatttagtccgtcaaatatcttaataactaatcatggtcaacttcaaacatgatata |
133 |
Q |
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| T |
47269075 |
gcagagacaagagaagggcatctgtttgagcagtatttttctcaatttagtccgtcaaatatcttaataactaatcatggtcaacttcaaacatgatata |
47268976 |
T |
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| Q |
134 |
tggtg---tctatgtacatgttttctaggaaatgcatttgcattttctcagctagcagctgaaatgagatggtttagatttgtttgtatcgatattcatg |
230 |
Q |
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| T |
47268975 |
tggtggtgtctatgtacatgttttctaggaaatgcatttgcattttctcagctagcagctgaaatgagatggtttagatttgtttgtatcgatattcatg |
47268876 |
T |
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| Q |
231 |
acttgtatgtgtgtagtagaattgaattggttgaatttagttgctatttgctagaatttgatgaatcagatgatcgggtaagcaacttctttctcttttg |
330 |
Q |
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| T |
47268875 |
acttgtatgtgtgtagtagaattgaattggttgaatttagttgctatttgctagaatttgatgaatcagatgatcgggtaagtaacttctttctcttttg |
47268776 |
T |
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| Q |
331 |
gattacctaaaaagtaaacatggattgcactcgcaaattttaacctaaatagattagtagtttgagtgttatcaattttttca |
413 |
Q |
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| T |
47268775 |
gattacctaaaaagtaaacatggattgcactcgcaaattttaacctaaatagattagtagtttgagtgttatcaattttttca |
47268693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 435 - 504
Target Start/End: Complemental strand, 47268651 - 47268582
Alignment:
| Q |
435 |
tttagatcaagtttaattgccttgtaaatttcatatacgcacattgttaagcacacttacagttggtttg |
504 |
Q |
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| T |
47268651 |
tttagatcaagtttaattgccttgtaaatttcatatacgcacattgttaagcacacttacagttcgtttg |
47268582 |
T |
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