View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8941_low_19 (Length: 483)
Name: NF8941_low_19
Description: NF8941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8941_low_19 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 89 - 464
Target Start/End: Original strand, 14853396 - 14853773
Alignment:
| Q |
89 |
aaaaatggattatattaacattgcaaaagtgatatcattaacacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtcta |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | | || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14853396 |
aaaaatggattatattaacattgcaaaagtgatatcgtcagcaaaaggtgtgccaagaaaccaccgcaaacaaaggttcacaaaagatacaaagagtcta |
14853495 |
T |
|
| Q |
189 |
tccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatatttt |
286 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
14853496 |
tccaacgcttaaacacgacgtaggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaagaataatacttt |
14853595 |
T |
|
| Q |
287 |
actttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaagccaaatgagat |
386 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| || | |
|
|
| T |
14853596 |
actttgtctagtagctgatctaaagatgactccttttgattaaataatctagcatttctttcattccatatggtccaaacggttagaagccaaataagct |
14853695 |
T |
|
| Q |
387 |
gaagaaaagaccatgttgatttcataacacctgtatagtgagtaaactgaataaaatgatcagaaatttcttgatgat |
464 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14853696 |
gaagaaaagaccgtcttgatttcataacacctgtatagtgagtaaactgaataaaatgattagaaatttcttgatgat |
14853773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 89 - 442
Target Start/End: Original strand, 26535529 - 26535883
Alignment:
| Q |
89 |
aaaaatggattatattaacattgcaaaagtgatatcattaacacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtcta |
188 |
Q |
| |
|
|||||||||||||||||| | || || | |||||||| | ||||||||||| |||| ||||||||| ||||| |||||||| | |||||||||||||| |
|
|
| T |
26535529 |
aaaaatggattatattaataatgtaaga-tgatatcaaaagcacaaggtgtgccaagttaccaccgcacacaacagttcacaacaaatacaaagagtcta |
26535627 |
T |
|
| Q |
189 |
tccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatatttt |
286 |
Q |
| |
|
|| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
26535628 |
tcaaatgcctaaacacgacataggactagactaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaagaataatacttt |
26535727 |
T |
|
| Q |
287 |
actttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaagccaaatgagat |
386 |
Q |
| |
|
|||||||||| ||||| |||||||||| | || ||||| ||||| |||||||||||| ||||| || || ||||||||||| | | ||| ||||| || | |
|
|
| T |
26535728 |
actttgtctaatagctgatctaaagataattctttttgcttaaacaatctagcatttctttcattccatgtggtccaaacgatcaaaagtcaaataagct |
26535827 |
T |
|
| Q |
387 |
gaagaaaagaccatgttgatttcataacacctgtatagtgagtaaactgaataaaa |
442 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||||||| ||||||||| |||| |
|
|
| T |
26535828 |
gaagaaaagaccgtcttgatttcataccacctgtatagtgaataaactgaaaaaaa |
26535883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 195 - 302
Target Start/End: Original strand, 25783096 - 25783205
Alignment:
| Q |
195 |
gcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttg |
292 |
Q |
| |
|
||||||||| |||| ||||| | |||||||| ||||||||||||||||||| ||| ||||| || |||| ||||||||| |||||||||| |||||| |
|
|
| T |
25783096 |
gcctaaacatgacaatggactcgtccaccacaaatgatcaccaaatacaaaagtagcttttttagccttcagccaccacaatgaataatatttaactttg |
25783195 |
T |
|
| Q |
293 |
tctagtagct |
302 |
Q |
| |
|
||||| |||| |
|
|
| T |
25783196 |
tctagcagct |
25783205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 3168556 - 3168609
Alignment:
| Q |
249 |
agcctttttggctttcaaccaccacaaa--ataatattttactttgtctagtag |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3168556 |
agccttattggctttcaaccaccacaaagaataatattttactttgtctagtag |
3168609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 297
Target Start/End: Complemental strand, 32072586 - 32072481
Alignment:
| Q |
195 |
gcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaag-cctttttggctttcaaccaccacaa--aataatattttacttt |
291 |
Q |
| |
|
|||||||||||||| ||| || | | |||||| ||||||||||||||||||| || ||||||| ||||||| |||||| || ||||| | |||||||| |
|
|
| T |
32072586 |
gcctaaacacgacaaagggcttgtctaccacaaatgatcaccaaatacaaaagtagccctttttagctttcagccaccagaaggaataaaactttacttt |
32072487 |
T |
|
| Q |
292 |
gtctag |
297 |
Q |
| |
|
|||||| |
|
|
| T |
32072486 |
gtctag |
32072481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 8440968 - 8440922
Alignment:
| Q |
190 |
ccaacgcctaaacacgacataggactagaccaccacatatgatcacc |
236 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||||| ||||||||| |
|
|
| T |
8440968 |
ccaatgcctaaacacgacatagggctcgaccaccacaaatgatcacc |
8440922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 89 - 464
Target Start/End: Original strand, 15644703 - 15645080
Alignment:
| Q |
89 |
aaaaatggattatattaacattgcaaaagtgatatcattaacacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtcta |
188 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||| |||||| |||||| ||||||||||||||||||| |
|
|
| T |
15644703 |
aaaaatgaattatattaac-ttgcaaaagtgatatcgttagcacaaggtgtgccaagaaaccaccgaaaacaatggttcataaaagatacaaagagtcta |
15644801 |
T |
|
| Q |
189 |
tccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaa--ataata-ttt |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| |||||| ||| |
|
|
| T |
15644802 |
tccaacgcctaaacacgacataggactagaccaccacatatgatcatcaaatacaaaacaagcatttttgggtttcaaccaccacaaagaataatacttt |
15644901 |
T |
|
| Q |
286 |
tactttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaagccaaatgaga |
385 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| ||||| ||||| || |
|
|
| T |
15644902 |
tactttgtctagtagctgatctaaagatgactccttttgattaaataatctagcatttctttcatttcatatggtccaaacggtcagaagtcaaataagc |
15645001 |
T |
|
| Q |
386 |
tgaagaaaagaccatgttgatttcataacacctgtatagtgagtaaactgaataaaatgatcagaaatttcttgatgat |
464 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15645002 |
tgaagaaaagaccatcttgatttcataacacctgtatagtgagtaaattgaataaaatgatcagaaatttcttgatgat |
15645080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 89 - 460
Target Start/End: Complemental strand, 17507545 - 17507186
Alignment:
| Q |
89 |
aaaaatggattatattaacattgcaaaagtgatatcattaacacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtcta |
188 |
Q |
| |
|
|||||||||||||| ||||| ||||| | |||||||| | ||||||||||| ||||| ||||||||| ||| | ||| |||| | |||||||| ||||| |
|
|
| T |
17507545 |
aaaaatggattataataacaatgcaaga-tgatatcaaaagcacaaggtgtgccaagataccaccgcacacaccagtttacaacaaatacaaagggtcta |
17507447 |
T |
|
| Q |
189 |
tccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaaataatattttac |
288 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| | |||| || |
|
|
| T |
17507446 |
tccaatgcctaaacacgacataggactagaccaccacatatggtcaccaaaaataaaacaagcctttttggctttcaaccaccacaaga-aata--aaac |
17507350 |
T |
|
| Q |
289 |
tttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaagccaaatgagatga |
388 |
Q |
| |
|
| || || |||||||||||| |||||||| ||||| |||||||| ||| ||||| || | || |||||| | || | ||||||||| || ||| |
|
|
| T |
17507349 |
t--------taactgatctaaagatgattccttttgcttaaacaatctagcgtttctttcattccaaatagtccaacctgtcaaaagccaaataagctga |
17507258 |
T |
|
| Q |
389 |
agaaaagaccatgttgatttcataacacctgtatagtgagtaaactgaataaaatgatcagaaatttcttga |
460 |
Q |
| |
|
|||||||||| | ||||| ||| | |||||||||||||| ||||||||| ||||||||| || |||| |||| |
|
|
| T |
17507257 |
agaaaagaccgtcttgatctcacaccacctgtatagtgaataaactgaaaaaaatgatccgatatttgttga |
17507186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 89 - 460
Target Start/End: Original strand, 17545669 - 17546028
Alignment:
| Q |
89 |
aaaaatggattatattaacattgcaaaagtgatatcattaacacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtcta |
188 |
Q |
| |
|
|||||||||||||| ||||| ||||| | |||||||| | ||||||||||| ||||| ||||||||| ||| | ||| |||| | |||||||| ||||| |
|
|
| T |
17545669 |
aaaaatggattataataacaatgcaaga-tgatatcaaaagcacaaggtgtgccaagataccaccgcacacaccagtttacaacaaatacaaagggtcta |
17545767 |
T |
|
| Q |
189 |
tccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaaataatattttac |
288 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| | |||| || |
|
|
| T |
17545768 |
tccaatgcctaaacacgacataggactagaccaccacatatggtcaccaaaaataaaacaagcctttttggctttcaaccaccacaaga-aata--aaac |
17545864 |
T |
|
| Q |
289 |
tttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaagccaaatgagatga |
388 |
Q |
| |
|
| || || |||||||||||| |||||||| ||||| |||||||| ||| ||||| || | || |||||| | || | ||||||||| || ||| |
|
|
| T |
17545865 |
t--------taactgatctaaagatgattccttttgcttaaacaatctagcgtttctttcattccaaatagtccaacctgtcaaaagccaaataagctga |
17545956 |
T |
|
| Q |
389 |
agaaaagaccatgttgatttcataacacctgtatagtgagtaaactgaataaaatgatcagaaatttcttga |
460 |
Q |
| |
|
|||||||||| | ||||| ||| | |||||||||||||| ||||||||| ||||||||| || |||| |||| |
|
|
| T |
17545957 |
agaaaagaccgtcttgatctcacaccacctgtatagtgaataaactgaaaaaaatgatccgatatttgttga |
17546028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 296
Target Start/End: Complemental strand, 552111 - 551998
Alignment:
| Q |
185 |
tctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataata |
282 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||| ||| ||||||||| |||||| | | ||| |
|
|
| T |
552111 |
tctatctaatgcctaaacacgacataggactagaccaccacatgtgttcaccaaaaacaaaagtagccttcttgactttcaaccgccacaacgagtgata |
552012 |
T |
|
| Q |
283 |
ttttactttgtcta |
296 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
552011 |
ttttactttgtcta |
551998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 6344193 - 6344144
Alignment:
| Q |
190 |
ccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaa |
239 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
6344193 |
ccaatgcctaaacacgacatagggctcgaccaccacaaatgatcaccaaa |
6344144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 291
Target Start/End: Complemental strand, 45977111 - 45977004
Alignment:
| Q |
186 |
ctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccac--aaaataatat |
283 |
Q |
| |
|
|||| ||| |||||||||||| | | || | |||||||| | || |||||||||||||| |||||||||| |||||||||||||| ||||||||| |
|
|
| T |
45977111 |
ctatacaatgcctaaacacgataaaagattcgaccaccaaaagtgttcaccaaatacaaagatagcctttttgactttcaaccaccacaaaaaataatac |
45977012 |
T |
|
| Q |
284 |
tttacttt |
291 |
Q |
| |
|
|||||||| |
|
|
| T |
45977011 |
tttacttt |
45977004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 85 - 462
Target Start/End: Original strand, 32239258 - 32239639
Alignment:
| Q |
85 |
aagtaaaaatggattatattaacattgcaaaagtgatatcattaacacaaggtgtgtcaagaaaccaccgcaaacaa-cggttcacaaaagatacaa-ag |
182 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| || || ||| |||||||||| ||||||||||||| ||| | | ||||||| |||||| || || |
|
|
| T |
32239258 |
aagtaaaaatagattatattaacaccgcaaaagttatctctttagtacaaggtgtgccaagaaaccaccgaaaaaattcagttcacataagatataatag |
32239357 |
T |
|
| Q |
183 |
agtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaaa--taa |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32239358 |
agtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaaaaataa |
32239457 |
T |
|
| Q |
281 |
tattttactttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaagccaaa |
380 |
Q |
| |
|
|| ||||||||||||||||||| ||||| |||| |||| ||||| |||||||||||||||||| ||||| |||||||| |||||||||| ||||| |||| |
|
|
| T |
32239458 |
tactttactttgtctagtagctgatctatagataactctttttgtttaaataatctagcatttctttcattctatatgatccaaacggtcagaagtcaaa |
32239557 |
T |
|
| Q |
381 |
tgagatgaagaaaagaccatgttgatttcataacacctgtatagtgagtaaactgaataaaatgatcagaaatttcttgatg |
462 |
Q |
| |
|
| || |||||||| |||| | ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
32239558 |
taagctgaagaaatgaccgtcttgatttcataacacctgtatagtgagaaaactgaataaagtgatcagaaatttcttgatg |
32239639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 296
Target Start/End: Original strand, 17673698 - 17673782
Alignment:
| Q |
213 |
actagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttgtcta |
296 |
Q |
| |
|
||||||||||||||| || |||||||| ||||| | |||||||||| ||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
17673698 |
actagaccaccacatgtgttcaccaaaaacaaagta-gcctttttggttttcaaccaccacaaagagttatattttactttgtcta |
17673782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 276
Target Start/End: Complemental strand, 28449308 - 28449227
Alignment:
| Q |
195 |
gcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaa |
276 |
Q |
| |
|
|||||||||||||| || || |||||||||| || |||||||||||||| || |||||||||||||||||| |||||| |
|
|
| T |
28449308 |
gcctaaacacgacaatgggctcgaccaccacaaatattcaccaaatacaaagatagtctttttggctttcaaccatcacaaa |
28449227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 203; Significance: 1e-110; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 89 - 462
Target Start/End: Original strand, 18587838 - 18588214
Alignment:
| Q |
89 |
aaaaatggattatattaacattgcaaaagtgatatcattaacacaaggtgtgtcaagaaaccaccgcaaacaa-cggttcacaaaagatacaa-agagtc |
186 |
Q |
| |
|
||||| |||||||||||||| | || ||||||| || ||| ||||||||||||||||||||||||| ||| | | ||||||| || |||||| |||||| |
|
|
| T |
18587838 |
aaaaacggattatattaacactacacaagtgatctccttagcacaaggtgtgtcaagaaaccaccgaaaaaaggcagttcacacaaaatacaagagagtc |
18587937 |
T |
|
| Q |
187 |
tatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaa--ataatatt |
284 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| | |
|
|
| T |
18587938 |
tagccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggatttcaaccaccacaaagaataatact |
18588037 |
T |
|
| Q |
285 |
ttactttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaagccaaatgag |
384 |
Q |
| |
|
|||||||||||||||| | || | ||||||||| ||||| |||||||||||||||||| ||||| || ||||| |||||||||| |||||| |||| || |
|
|
| T |
18588038 |
ttactttgtctagtagttgttc-atagatgactctttttgtttaaataatctagcatttctttcattccatatgatccaaacggtcagaagcgaaataag |
18588136 |
T |
|
| Q |
385 |
atgaagaaaagaccatgttgatttcataacacctgtatagtgagtaaactgaataaaatgatcagaaatttcttgatg |
462 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
18588137 |
ctgaagaaaagaccgccttgatttcataacacctgtatagtgaataaattgaataaaatgatcagaaatttcttgatg |
18588214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 93 - 441
Target Start/End: Complemental strand, 13649662 - 13649310
Alignment:
| Q |
93 |
atggattatattaacattgcaaaagtgatatcattaacacaaggtgtgtcaagaaaccaccgcaaacaa-cggttcacaaaagatacaa-agagtctatc |
190 |
Q |
| |
|
|||||||||| ||||| ||||| | |||| || ||| ||||| ||||| ||| ||||||||| || | | ||||||||||||||||| |||||||||| |
|
|
| T |
13649662 |
atggattataataacactgcaagaatgatctctttagcacaaagtgtgccaaaaaaccaccgagaaaatgcagttcacaaaagatacaatagagtctatc |
13649563 |
T |
|
| Q |
191 |
caacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttac |
288 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13649562 |
caacgcctaaacacgacataggactcgaccaccacatatgatcaccaaatgcaaaacaagcctttttggctttcaaccaccacaaagaataatattttac |
13649463 |
T |
|
| Q |
289 |
tttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaagccaaatgagatga |
388 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||| ||||| ||||||||| |||||||| ||||| || ||||| |||||| ||| | ||||||||| || ||| |
|
|
| T |
13649462 |
tttgtctagtagctgatctatagatggctctttttgtttaaataatttagcatttctttcattccatatgatccaaatggtcataagccaaataagctga |
13649363 |
T |
|
| Q |
389 |
agaaaagaccatgttgatttcataacacctgtatagtgagtaaactgaataaa |
441 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13649362 |
ataaaagaccgccttgatttcataacacctgtatagtgagtaaactaaataaa |
13649310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 340 - 464
Target Start/End: Complemental strand, 7957053 - 7956929
Alignment:
| Q |
340 |
atttatttcagtctatatggtccaaacggttagaagccaaatgagatgaagaaaagaccatgttgatttcataacacctgtatagtgagtaaactgaata |
439 |
Q |
| |
|
|||| ||||| || ||||||| |||||||| ||||||||||| || ||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7957053 |
atttctttcattccatatggttcaaacggtcagaagccaaataagctgaagaaaagaccgtcttgatttcataacacctgtatagtgagtaaactgaata |
7956954 |
T |
|
| Q |
440 |
aaatgatcagaaatttcttgatgat |
464 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
7956953 |
aaatgatcagaaatttcttgatgat |
7956929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 179 - 462
Target Start/End: Original strand, 3550660 - 3550945
Alignment:
| Q |
179 |
aaagagtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--a |
276 |
Q |
| |
|
|||| |||||| ||| | |||||||||||| | |||| |||||||||| ||| |||||||||||||| | ||||||||||||||||||||||||||| | |
|
|
| T |
3550660 |
aaagtgtctattcaatgtctaaacacgacaaaagactcgaccaccacaaatgttcaccaaatacaaagctagcctttttggctttcaaccaccacaaaga |
3550759 |
T |
|
| Q |
277 |
ataatattttactttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaagc |
376 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||| | || || || |||||||||||| ||| |||| || ||| ||||| |||| |||||| |
|
|
| T |
3550760 |
ataatattttactttgtctagtagttgatctatagagtattctttctgtttaaataatctattgttttgttcattccataaaatccaagcggtaagaagc |
3550859 |
T |
|
| Q |
377 |
caaatgagatgaagaaaagaccatgttgatttcataacacctgtatagtgagtaaactgaataaaatgatcagaaatttcttgatg |
462 |
Q |
| |
|
||||| || ||||||||||||| ||||||| | |||||||||| | |||||| |||||||| ||||| ||||| |||||||| |
|
|
| T |
3550860 |
caaatcagctgaagaaaagacctctgcgatttcaaaccacctgtataattagtaaaatgaataaagtgatctgaaatatcttgatg |
3550945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 198 - 462
Target Start/End: Original strand, 7082526 - 7082793
Alignment:
| Q |
198 |
taaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccac---aaaataatattttactttgtc |
294 |
Q |
| |
|
||||||||||| || ||| |||||||||| ||| |||||||||||||| | ||||||| ||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
7082526 |
taaacacgacaaagtactcgaccaccacaaatgttcaccaaatacaaagctttccttttttgctttcaaccaccacaaaaaaataatactttactttgtc |
7082625 |
T |
|
| Q |
295 |
tagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaagccaaatgagatgaagaaaa |
394 |
Q |
| |
|
|||||| | ||||| ||| | || || | |||||||||||| || ||||||| ||| ||||| | || ||||||||||| || ||||||||| |
|
|
| T |
7082626 |
tagtagttgatctatagagcattctttctatttaaataatctattgttccgttcagtccataaaatccaagccgtaagaagccaaatcagctgaagaaaa |
7082725 |
T |
|
| Q |
395 |
gaccatgttgatttcataacacctgtatagtgagtaaactgaataaaatgatcagaaatttcttgatg |
462 |
Q |
| |
|
|||| | ||||||| | |||||||||| | ||||||||||||| | |||| ||||| |||||||| |
|
|
| T |
7082726 |
gacctttacgatttcaaaccacctgtataattagtaaactgaatagagtgatttgaaatatcttgatg |
7082793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 179 - 296
Target Start/End: Complemental strand, 20013881 - 20013764
Alignment:
| Q |
179 |
aaagagtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--a |
276 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||| ||||||||||||| || |||||||| |||||| ||||||||||||||||||||||||||| | |
|
|
| T |
20013881 |
aaagaatctatccaatgcctaaacacgacagaggattagaccaccacatgtg-tcaccaaaaacaaaa-gagcctttttggctttcaaccaccacaacga |
20013784 |
T |
|
| Q |
277 |
ataatattttactttgtcta |
296 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
20013783 |
gtgatattttactttgtcta |
20013764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 8809842 - 8809763
Alignment:
| Q |
198 |
taaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaaa |
277 |
Q |
| |
|
|||||| |||| |||||| |||||||||| ||| |||||||||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
8809842 |
taaacatgacaaaggactcgaccaccacaaatgttcaccaaatacaaagctttccttttttgctttcaaccaccacaaaa |
8809763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 296
Target Start/End: Complemental strand, 28633806 - 28633698
Alignment:
| Q |
190 |
ccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatatttta |
287 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||||| ||||||||||| | |||| | | |||||||||||| ||||||||| ||||||| |||| |
|
|
| T |
28633806 |
ccaatgcctaaacacgacaatggactcaaccaccacatgtgatcaccaaacataaaaacacaccttttggctttcatccaccacaatgaataatacttta |
28633707 |
T |
|
| Q |
288 |
ctttgtcta |
296 |
Q |
| |
|
|||| |||| |
|
|
| T |
28633706 |
ctttatcta |
28633698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 89 - 462
Target Start/End: Original strand, 37322045 - 37322418
Alignment:
| Q |
89 |
aaaaatggattatattaacattgcaaaagtgatatcattaacacaaggtgtgtcaagaaaccaccgcaaacaa-cggttcacaaaagatacaa-agagtc |
186 |
Q |
| |
|
|||||||||||||||||| | ||||||| |||| | ||| ||||||||||| || ||||||||| || || | || ||||||||||| || |||||| |
|
|
| T |
37322045 |
aaaaatggattatattaatactgcaaaaatgatccctttagcacaaggtgtgccattaaaccaccgagaaaaagcagtccacaaaagatataatagagtc |
37322144 |
T |
|
| Q |
187 |
tatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatatt |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
37322145 |
tatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttgactttcaaccaccacaaagaataatatt |
37322244 |
T |
|
| Q |
285 |
ttactttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaagccaaatgag |
384 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||| ||||| ||||||||||||||||| |||| || ||||| |||||||||| ||||||||||| | |
|
|
| T |
37322245 |
ttactttgtctagtagttgatctatagatgactctttttgtataaataatctagcatttcgttcattccatatgatccaaacggtcagaagccaaataaa |
37322344 |
T |
|
| Q |
385 |
atgaagaaaagaccatgttgatttcataacacctgtatagtgagtaaactgaataaaatgatcagaaatttcttgatg |
462 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
37322345 |
ctgaagaaaagaccaccttgatttcataacac----atagtgagtaaactgaataaagtgattagaaatttcttgatg |
37322418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 96 - 460
Target Start/End: Complemental strand, 18309564 - 18309199
Alignment:
| Q |
96 |
gattatattaacattgcaaaagtgatatcattaacacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtctatccaacg |
195 |
Q |
| |
|
||||||| ||||| ||||| | |||||||| | ||||||||||| ||||| ||||||||| ||| | ||| |||| | |||||||| ||||||||| | |
|
|
| T |
18309564 |
gattataataacaatgcaaga-tgatatcaaaagcacaaggtgtgccaagataccaccgcacacaccagtttacaataaatacaaaggatctatccaatg |
18309466 |
T |
|
| Q |
196 |
cctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttgt |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| | |||||||| | |
|
|
| T |
18309465 |
cctaaacacgacataggactagaccaccacatatggtcaccaaaaacaaaacaagcctttttggctttcaaccaccacaaggaataaaactttactttat |
18309366 |
T |
|
| Q |
294 |
ctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaagccaaatgagatgaagaaa |
393 |
Q |
| |
|
||| || || |||||||||||| |||||||| ||||| |||||||| ||| ||||| || |||| |||||||| || | ||||||||| || |||||||| |
|
|
| T |
18309365 |
ctaataactgatctaaagatgattccttttgcttaaacaatctagcgtttctttcattccatatagtccaaactgtcaaaagccaaataagctgaagaaa |
18309266 |
T |
|
| Q |
394 |
agaccatgttgatttcataacacctgtatagtgagtaaactgaataaaatgatcagaaatttcttga |
460 |
Q |
| |
|
||||| | ||||| ||| | |||||||||||||| ||||||||| |||||||||||| |||| |||| |
|
|
| T |
18309265 |
agaccgtcttgatctcacaccacctgtatagtgaataaactgaaaaaaatgatcagagatttgttga |
18309199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 89 - 437
Target Start/End: Original strand, 136405 - 136754
Alignment:
| Q |
89 |
aaaaatggattatattaacattgcaaaagtgatatcattaacacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtcta |
188 |
Q |
| |
|
|||||||||||||| ||||| ||||| | |||||||| | ||||||||||| ||||| ||||||||| ||| | ||| |||| | |||||||| ||||| |
|
|
| T |
136405 |
aaaaatggattataataacaatgcaaga-tgatatcaaaagcacaaggtgtgccaagataccaccgcacacaccagtttacaacaaatacaaagtgtcta |
136503 |
T |
|
| Q |
189 |
tccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatatttt |
286 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||| |
|
|
| T |
136504 |
tccaatgcctaaacacgacataggactagaccaccacatatggtcaccaaaaacaaaacaagcctttttggctttcaaccaccacaaggaataaaacttt |
136603 |
T |
|
| Q |
287 |
actttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaagccaaatgagat |
386 |
Q |
| |
|
||||| |||| || || |||||||||||| |||||||| ||||| |||||||| ||| ||||| || |||| ||||||||||| | ||| ||||| || | |
|
|
| T |
136604 |
actttatctaataactgatctaaagatgattccttttgcttaaacaatctagcgtttctttcattccatatagtccaaacggtcaaaaggcaaataagct |
136703 |
T |
|
| Q |
387 |
gaagaaaagaccatgttgatttcataacacctgtatagtgagtaaactgaa |
437 |
Q |
| |
|
||||||||||| | ||||| ||| | |||||||||||||| ||||||||| |
|
|
| T |
136704 |
gaagaaaagactgtcttgatctcacaccacctgtatagtgaataaactgaa |
136754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 89 - 442
Target Start/End: Original strand, 25890549 - 25890903
Alignment:
| Q |
89 |
aaaaatggattatattaacattgcaaaagtgatatcattaacacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtcta |
188 |
Q |
| |
|
|||||||||||||| ||||| ||||| | |||||||| | |||||| || ||||| ||||||||| ||| ||| ||| | |||||||| ||||| |
|
|
| T |
25890549 |
aaaaatggattataataacaatgcaaga-tgatatcaaaagtacaaggaatgccaagataccaccgcacacacaagtttacatcaaatacaaagggtcta |
25890647 |
T |
|
| Q |
189 |
tccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatatttt |
286 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||| |
|
|
| T |
25890648 |
tccaatgcctaaacacgacataggactggaccaccacatatgatcaccaaaaacaaaacaagcctttttggctttcaaccaccacaaagaataaaacttt |
25890747 |
T |
|
| Q |
287 |
actttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaagccaaatgagat |
386 |
Q |
| |
|
||||| |||| || || |||||||||||| |||||||| ||||| |||||||||||| ||||| || |||| ||||||||||| | ||||||||| || | |
|
|
| T |
25890748 |
actttatctaataactgatctaaagatgattccttttgcttaaacaatctagcatttctttcattccatatagtccaaacggtcaaaagccaaataagct |
25890847 |
T |
|
| Q |
387 |
gaagaaaagaccatgttgatttcataacacctgtatagtgagtaaactgaataaaa |
442 |
Q |
| |
|
|||||||||| | | ||||| ||| | |||||||||||||| ||||||||| |||| |
|
|
| T |
25890848 |
gaagaaaagatcgtcttgatctcacaccacctgtatagtgaataaactgaagaaaa |
25890903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 349
Target Start/End: Complemental strand, 17971782 - 17971628
Alignment:
| Q |
197 |
ctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttgtc |
294 |
Q |
| |
|
||||||| |||| |||||||||||||||||| || |||||| | |||||| |||||||||| |||||| ||||||||| ||| |||||||||||||| |
|
|
| T |
17971782 |
ctaaacatgacaaaggactagaccaccacatgtgttcaccataaacaaaaatagcctttttgactttcagccaccacaaataatggtattttactttgtc |
17971683 |
T |
|
| Q |
295 |
tagtagcttatctaaagatgactccttttgattaaataatctagcatttatttca |
349 |
Q |
| |
|
|| |||| | ||| |||| | || || || |||||||||||||||||| ||||| |
|
|
| T |
17971682 |
taatagcagaactagagatcattctttctgtttaaataatctagcatttctttca |
17971628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 195 - 302
Target Start/End: Complemental strand, 9445426 - 9445317
Alignment:
| Q |
195 |
gcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaa-acaagcctttttggctttcaaccaccacaaaa--taatattttacttt |
291 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| || |||| ||| ||||| |||| | || |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9445426 |
gcctaaacacgacaatggactcgaccaccacaattgttcacaaaaaacaaagacaatc-ttattggctttcaaccaccacaaaaaataatattttacttt |
9445328 |
T |
|
| Q |
292 |
gtctagtagct |
302 |
Q |
| |
|
||||||||||| |
|
|
| T |
9445327 |
gtctagtagct |
9445317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 179 - 296
Target Start/End: Original strand, 37718423 - 37718542
Alignment:
| Q |
179 |
aaagagtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--a |
276 |
Q |
| |
|
||||| |||||| || ||||||||||||| ||||||||||||||| || || |||||||| | |||| || ||||||| ||||||||||||| || | |
|
|
| T |
37718423 |
aaagaatctatctaatacctaaacacgacagaggactagaccaccatatgtgttcaccaaaaataaaaatagtctttttgactttcaaccaccataatga |
37718522 |
T |
|
| Q |
277 |
ataatattttactttgtcta |
296 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
37718523 |
gtgatattttactttgtcta |
37718542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 297
Target Start/End: Original strand, 42648820 - 42648924
Alignment:
| Q |
195 |
gcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttg |
292 |
Q |
| |
|
|||||||||||||| | | || ||||||||| ||| |||||||| |||||| || ||| ||||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
42648820 |
gcctaaacacgacaaatggctcaaccaccacaaatggtcaccaaaaacaaaaacagtcttattggccttcagccaccacaaagaataatattttactttg |
42648919 |
T |
|
| Q |
293 |
tctag |
297 |
Q |
| |
|
||||| |
|
|
| T |
42648920 |
tctag |
42648924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 89 - 460
Target Start/End: Original strand, 13059411 - 13059783
Alignment:
| Q |
89 |
aaaaatggattatattaacattgcaaaagtgatatcattaacacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtcta |
188 |
Q |
| |
|
||||||| |||||| ||||| ||| | | |||||||| | |||||| |||| ||||| |||||||| ||| | ||| |||| | |||||||| ||||| |
|
|
| T |
13059411 |
aaaaatgaattataataacaatgctaga-tgatatcaaaagcacaagatgtgccaagatgccaccgcacacaccagtttacaacaaatacaaagggtcta |
13059509 |
T |
|
| Q |
189 |
tccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatatttt |
286 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||| |
|
|
| T |
13059510 |
tccaatgcctaaacacgacataggactagaccaccacatatggtcaccaaaaacaaaacaagcctttttggctttcaaccaccacaaggaataaaacttt |
13059609 |
T |
|
| Q |
287 |
actttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaagccaaatgagat |
386 |
Q |
| |
|
||||| |||| || || ||||| |||||| |||||||| ||||| |||||||||||| ||||| || |||| ||||||||||| | ||||||||| || | |
|
|
| T |
13059610 |
actttatctaataactgatctagagatgattccttttgcttaaacaatctagcatttctttcattccatatagtccaaacggtcaaaagccaaataagct |
13059709 |
T |
|
| Q |
387 |
gaagaaaagaccatgttgatttcataacacctgtatagtgagtaaactgaataaaatgatcagaaatttcttga |
460 |
Q |
| |
|
|||||||||||| | ||||| ||| | |||||||||||| ||||||||| |||||||||||| |||| |||| |
|
|
| T |
13059710 |
gaagaaaagaccgtcttgatctcacactacctgtatagtggataaactgaaaaaaatgatcagagatttgttga |
13059783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 183 - 462
Target Start/End: Original strand, 36552228 - 36552509
Alignment:
| Q |
183 |
agtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataa |
280 |
Q |
| |
|
||||||||||| | |||||||||||| |||||| |||||||||||||| | ||||||||||||| || |||||||||||||||||| ||||| ||||| |
|
|
| T |
36552228 |
agtctatccaatgtctaaacacgacagaggactcgaccaccacatatgttttccaaatacaaaactagtctttttggctttcaaccatcacaaagaataa |
36552327 |
T |
|
| Q |
281 |
tattttactttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaagccaaa |
380 |
Q |
| |
|
||||||||||||| |||||||| | ||| ||| | || ||||| ||||||||| ||| |||| ||||| || ||| ||||||| ||||||||||||| |
|
|
| T |
36552328 |
tattttactttgtttagtagctgaactatagagcattctttttgtttaaataatatagtatttctttcattccataaaatccaaacagttagaagccaaa |
36552427 |
T |
|
| Q |
381 |
tgagatgaagaaaagaccatgttgatttcataacacctgtatagtgagtaaactgaataaaatgatcagaaatttcttgatg |
462 |
Q |
| |
|
| || |||||||| |||| ||||||| | ||||||||||||||| |||||||||||| |||| |||||| |||||||| |
|
|
| T |
36552428 |
taagctgaagaaaggacctccgcgatttcaaaccacctgtatagtgagcaaactgaataaagtgattagaaatctcttgatg |
36552509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 441
Target Start/End: Complemental strand, 44029788 - 44029507
Alignment:
| Q |
164 |
gttcacaaaagatacaaagag--tctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggct |
261 |
Q |
| |
|
|||||||||| ||| |||||| ||||||||| ||||||| |||||| | ||||||||||||||| || |||| ||| ||||| | ||||||||||| |
|
|
| T |
44029788 |
gttcacaaaacatataaagagaatctatccaatgcctaaatacgacaaattactagaccaccacatgtgttcactaaaaacaaacataacctttttggct |
44029689 |
T |
|
| Q |
262 |
ttcaaccaccacaaa--ataatattttactttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatgg |
359 |
Q |
| |
|
|||| |||||| ||| || |||||||||||||||| ||||| ||||| || | || || || |||||||||||||||||| ||||| || ||| |
|
|
| T |
44029688 |
ttcagccaccataaaggatggtattttactttgtctaatagctgatctagagtgcattctttctgtttaaataatctagcatttctttcattccataaca |
44029589 |
T |
|
| Q |
360 |
tccaaacggttagaagccaaatgagatgaagaaaagaccatgttgatttcataacacctgtatagtgagtaaactgaataaa |
441 |
Q |
| |
|
||| || || ||||||||||| || || | |||||| | | ||||||| ||||||| |||| | ||||||||||||||| |
|
|
| T |
44029588 |
cccagactgtgagaagccaaataagctgcataaaagatcttcgggatttcaaaacacctatataattagtaaactgaataaa |
44029507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 195 - 337
Target Start/End: Complemental strand, 37532825 - 37532681
Alignment:
| Q |
195 |
gcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttg |
292 |
Q |
| |
|
||||| |||||||| | ||| |||||||||| ||| |||||||||||||| || |||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
37532825 |
gcctagacacgacaatgaactcgaccaccacaaatgttcaccaaatacaaagatagtctttttggttttcaaccaccacaaagaataatattttactttt |
37532726 |
T |
|
| Q |
293 |
tctagtagcttatctaaagatgactccttttgattaaataatcta |
337 |
Q |
| |
|
| |||||| | ||||| ||| | || ||||| |||||||||||| |
|
|
| T |
37532725 |
tgtagtagttgatctatagaacattctttttgtttaaataatcta |
37532681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 296
Target Start/End: Original strand, 36930772 - 36930880
Alignment:
| Q |
190 |
ccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatatttta |
287 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||||| |||||||||||| |||| | |||| | ||||||||||||||||| |||| ||||||| |
|
|
| T |
36930772 |
ccaatgcctaaacacgacatagggctcgaccaccacaaatgatcaccaaacgtaaaaacaaccttatgtgctttcaaccaccacaatgaatagtatttta |
36930871 |
T |
|
| Q |
288 |
ctttgtcta |
296 |
Q |
| |
|
|||| |||| |
|
|
| T |
36930872 |
ctttatcta |
36930880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 45101575 - 45101623
Alignment:
| Q |
19 |
aaattagatgtctgg-gttcgaactccgaccttacttgattgtattatg |
66 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||| |||||||||| |
|
|
| T |
45101575 |
aaattagatgtctggtgttcgaagtccgaccttacttgcttgtattatg |
45101623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 9e-68; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 89 - 460
Target Start/End: Original strand, 39584505 - 39584877
Alignment:
| Q |
89 |
aaaaatggattatattaacattgcaaaagtgatatcattaacacaaggtgtgtcaagaaaccaccgcaaacaacggttcacaaaagatacaaagagtcta |
188 |
Q |
| |
|
||||||| |||||| ||||| ||| ||| |||||||| | |||||| |||| ||||| ||||||||| ||| | ||| |||| | | ||||| ||||| |
|
|
| T |
39584505 |
aaaaatgaattataataacaatgctaaa-tgatatcaaaagcacaagatgtgccaagataccaccgcacacaccagtttacaacaaaagcaaagggtcta |
39584603 |
T |
|
| Q |
189 |
tccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatatttt |
286 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| ||||| | || |
|
|
| T |
39584604 |
tccaatgcctaaacacgacataggactagaccaccacaaatgatcaccaaaaataaaacaagcctttttggctttcaaccaccacaaagaataaaactta |
39584703 |
T |
|
| Q |
287 |
actttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaagccaaatgagat |
386 |
Q |
| |
|
||||| |||| || || ||||| |||||| |||||||| ||||| | |||||||||| ||||| || |||| ||||||||||| | |||||||| || | |
|
|
| T |
39584704 |
actttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagccaaagaagct |
39584803 |
T |
|
| Q |
387 |
gaagaaaagaccatgttgatttcataacacctgtatagtgagtaaactgaataaaatgatcagaaatttcttga |
460 |
Q |
| |
|
|||||||||||| | ||||| ||| | |||||||||||| |||| |||| |||||||||||| |||| |||| |
|
|
| T |
39584804 |
gaagaaaagaccgtcttgatctcacactacctgtatagtggataaattgaacaaaatgatcagagatttgttga |
39584877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 177 - 398
Target Start/End: Original strand, 9990630 - 9990853
Alignment:
| Q |
177 |
acaaagagtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccac--a |
274 |
Q |
| |
|
||||| |||||| ||| |||||||||||||| ||||| || ||||||| || |||||||| ||||| |||||| || ||||||||||||||| | |
|
|
| T |
9990630 |
acaaatagtctacacaatgcctaaacacgacaatggactcgatcaccacaattgttcaccaaaaacaaagatagccttatttgctttcaaccaccacaga |
9990729 |
T |
|
| Q |
275 |
aaataatattttactttgtctagtagcttatctaaagatgactccttttgattaaataatctagcatttatttcagtctatatggtccaaacggttagaa |
374 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| || | ||||| ||||||||||||||| |||| ||||| || ||| | |||||| || |||| |
|
|
| T |
9990730 |
gaataatattttactttgtctagtagctgaactattgagcattccttctgattaaataatctattatttctttcattccataggacccaaacagtaagaa |
9990829 |
T |
|
| Q |
375 |
gccaaatgagatgaagaaaagacc |
398 |
Q |
| |
|
|||||| || ||||||||||||| |
|
|
| T |
9990830 |
gccaaacaagctgaagaaaagacc |
9990853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 30713435 - 30713324
Alignment:
| Q |
187 |
tatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatatt |
284 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||||||| ||||||||||| | |||| | |||| | ||||||||||||||| || ||||||||| |
|
|
| T |
30713435 |
tatccaatgcctaaacacgacatgagactcgaccaccacaattgatcaccaaacataaaaacaaccttatgggctttcaaccaccataatgaataatatt |
30713336 |
T |
|
| Q |
285 |
ttactttgtcta |
296 |
Q |
| |
|
||||||| |||| |
|
|
| T |
30713335 |
ttactttatcta |
30713324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 296
Target Start/End: Original strand, 25388384 - 25388485
Alignment:
| Q |
197 |
ctaaacacgacataggactagaccaccacatatgatcaccaaatacaaa-acaagcctttttggctttcaaccaccacaa--aataatattttactttgt |
293 |
Q |
| |
|
|||||||||||| |||||| |||||||||| || |||||||||||||| |||| ||||||| ||||||||||||| || |||||||||||||||| | |
|
|
| T |
25388384 |
ctaaacacgacaaaggactcgaccaccacaaatattcaccaaatacaaagacaa-cctttttaactttcaaccaccataaagaataatattttactttat |
25388482 |
T |
|
| Q |
294 |
cta |
296 |
Q |
| |
|
||| |
|
|
| T |
25388483 |
cta |
25388485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 40704053 - 40704156
Alignment:
| Q |
200 |
aacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataata-ttttactttgtcta |
296 |
Q |
| |
|
||||||||| ||||| ||||| |||| ||| ||||||| ||||| |||||| ||| |||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
40704053 |
aacacgacaatggactcgaccatcacaaatgttcaccaataacaaagatagccttattgactttcaaccaccacaaagaataatatttttactttgtcta |
40704152 |
T |
|
| Q |
297 |
gtag |
300 |
Q |
| |
|
|||| |
|
|
| T |
40704153 |
gtag |
40704156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 302
Target Start/End: Original strand, 27800837 - 27800946
Alignment:
| Q |
195 |
gcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaa-acaagcctttttggctttcaaccaccacaa--aataatattttacttt |
291 |
Q |
| |
|
||||||| | |||| |||||| |||||||||| ||| |||||||| | ||| ||| | || |||||||||||||||||||| ||||||| |||| ||| |
|
|
| T |
27800837 |
gcctaaataggacaaaggactcgaccaccacaaatgctcaccaaaaagaaatacacgt-ttattggctttcaaccaccacaaagaataatactttatttt |
27800935 |
T |
|
| Q |
292 |
gtctagtagct |
302 |
Q |
| |
|
||||||||||| |
|
|
| T |
27800936 |
gtctagtagct |
27800946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 296
Target Start/End: Original strand, 28381550 - 28381658
Alignment:
| Q |
190 |
ccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaa-acaagcctttttggctttcaaccaccacaa--aataatatttt |
286 |
Q |
| |
|
|||| |||||||||||||| ||| | ||| ||||||| ||||||||||| | ||| |||| || |||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
28381550 |
ccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaatacaa-cccttttggctttcatccaccacaatgaatgatatttt |
28381648 |
T |
|
| Q |
287 |
actttgtcta |
296 |
Q |
| |
|
||||| |||| |
|
|
| T |
28381649 |
actttatcta |
28381658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 167 - 296
Target Start/End: Original strand, 47129220 - 47129353
Alignment:
| Q |
167 |
cacaaaagatacaaagag--tctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttc |
264 |
Q |
| |
|
||||||| |||||||||| | ||||||| || |||||||||||||||||||||||||||||| || |||||||| |||||| |||||||||||||||| |
|
|
| T |
47129220 |
cacaaaatatacaaagagaatttatccaatgcttaaacacgacataggactagaccaccacatgtgttcaccaaaaacaaaaatagcctttttggctttc |
47129319 |
T |
|
| Q |
265 |
aaccaccacaa--aataatattttactttgtcta |
296 |
Q |
| |
|
||||||||||| | | ||||||||||||||||| |
|
|
| T |
47129320 |
aaccaccacaaagagtgatattttactttgtcta |
47129353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 190 - 302
Target Start/End: Complemental strand, 43128133 - 43128019
Alignment:
| Q |
190 |
ccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatatttta |
287 |
Q |
| |
|
|||| ||||||| |||||| |||| ||||||| || ||| |||||||||||||| | ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43128133 |
ccaatgcctaaatacgacaatagactcgaccaccgcagatgttcaccaaatacaaagacatcctttttggctttcaaccaccacaaagaataatatttta |
43128034 |
T |
|
| Q |
288 |
ctttgtctagtagct |
302 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
43128033 |
ctttgtctagtagct |
43128019 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 308
Target Start/End: Original strand, 7098106 - 7098194
Alignment:
| Q |
222 |
ccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatattttactttgtctagtagcttatcta |
308 |
Q |
| |
|
||||| ||| |||||||||||||| ||||||||||||||| | |||||| || |||||||||| |||| ||||| ||||| ||||| |
|
|
| T |
7098106 |
ccacaaatgttcaccaaatacaaagagagcctttttggcttttatccaccataaagaataatatttgacttagtctaatagctgatcta |
7098194 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 296
Target Start/End: Original strand, 54684197 - 54684305
Alignment:
| Q |
190 |
ccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaa--aataatatttta |
287 |
Q |
| |
|
|||| ||||||| ||||||| ||||| |||||||| | ||||||||||| | |||| | |||| | |||||||| |||||| || |||||||||||| |
|
|
| T |
54684197 |
ccaatgcctaaatacgacatgggactcgaccaccataattgatcaccaaacataaaaacaaccttatgggctttcatccaccataatgaataatatttta |
54684296 |
T |
|
| Q |
288 |
ctttgtcta |
296 |
Q |
| |
|
|||| |||| |
|
|
| T |
54684297 |
ctttatcta |
54684305 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 337
Target Start/End: Complemental strand, 87767 - 87605
Alignment:
| Q |
177 |
acaaagagtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaa-acaagcctttttggctttcaaccaccacaa |
275 |
Q |
| |
|
||||| |||||| ||| |||||||||||||| ||||| |||||||||| || |||| ||| ||||| |||| |||| |||||||||||||||||||| |
|
|
| T |
87767 |
acaaatagtctagtcaatgcctaaacacgacaatggactcgaccaccacaattgttcactaaaaacaaagacaa-ccttattggctttcaaccaccacaa |
87669 |
T |
|
| Q |
276 |
--aataatattttactttgtctagtagcttatctaaagatgactccttttgattaaataatcta |
337 |
Q |
| |
|
||||||||||||||||||| ||||| | | ||| | | ||||||||||||||||||||| |
|
|
| T |
87668 |
agaataatattttactttgtccagtagttgaactattaagcattccttttgattaaataatcta |
87605 |
T |
|
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